Wall clock time and date at job start Wed Apr 1 2020 03:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.90320 * 2 1 4 4 N 1.40081 * 108.20688 * 180.25818 * 3 2 1 5 5 H 0.96997 * 126.03887 * 179.69583 * 4 3 2 6 6 C 1.34956 * 107.92540 * 359.72538 * 4 3 2 7 7 C 1.50693 * 126.12617 * 180.02562 * 6 4 3 8 8 C 1.35316 * 107.74304 * 359.97438 * 6 4 3 9 9 C 1.50704 * 126.03497 * 180.02562 * 8 6 4 10 10 C 1.52994 * 109.47324 * 90.00422 * 9 8 6 11 11 C 1.50694 * 109.47307 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00261 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00437 * 179.97438 * 11 10 9 14 14 C 1.46492 * 120.00351 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.32537 * 34.64135 * 14 13 11 16 16 C 1.53035 * 109.32884 * 154.11000 * 14 13 11 17 17 C 1.54017 * 108.30375 * 176.69176 * 16 14 13 18 18 H 1.08995 * 113.34538 * 168.00917 * 17 16 14 19 19 C 1.57159 * 105.53336 * 292.36829 * 17 16 14 20 20 C 1.55174 * 99.59512 * 74.59309 * 19 17 16 21 21 H 1.08995 * 112.48650 * 162.91370 * 20 19 17 22 22 C 1.52988 * 109.32405 * 274.99904 * 14 13 11 23 23 N 1.47793 * 104.87307 * 40.38440 * 20 19 17 24 24 C 1.36939 * 125.85319 * 153.25442 * 23 20 19 25 25 H 1.08000 * 119.99629 * 353.89459 * 24 23 20 26 26 C 1.38809 * 119.99974 * 173.89076 * 24 23 20 27 27 N 1.31618 * 119.99866 * 6.78508 * 26 24 23 28 28 Si 1.86806 * 119.99808 * 186.78218 * 26 24 23 29 29 H 1.48502 * 109.46855 * 94.98957 * 28 26 24 30 30 H 1.48501 * 109.46954 * 214.98485 * 28 26 24 31 31 H 1.48493 * 109.47173 * 334.98866 * 28 26 24 32 32 C 1.47081 * 108.28882 * 333.26132 * 23 20 19 33 33 H 1.09004 * 109.46949 * 270.20804 * 1 2 3 34 34 H 1.09001 * 109.46629 * 30.20788 * 1 2 3 35 35 H 1.09002 * 109.47420 * 150.20847 * 1 2 3 36 36 H 1.09010 * 109.47103 * 269.96681 * 7 6 4 37 37 H 1.08999 * 109.47413 * 29.96723 * 7 6 4 38 38 H 1.09003 * 109.47277 * 149.97315 * 7 6 4 39 39 H 1.09003 * 109.47197 * 329.99711 * 9 8 6 40 40 H 1.09002 * 109.46525 * 210.00086 * 9 8 6 41 41 H 1.08997 * 109.47132 * 59.99637 * 10 9 8 42 42 H 1.09006 * 109.46810 * 299.99802 * 10 9 8 43 43 H 0.97005 * 119.99380 * 359.97438 * 13 11 10 44 44 H 1.09006 * 109.57516 * 295.48362 * 16 14 13 45 45 H 1.09007 * 109.57650 * 55.87271 * 16 14 13 46 46 H 1.09003 * 111.97464 * 316.92583 * 19 17 16 47 47 H 1.09004 * 111.21017 * 191.95551 * 19 17 16 48 48 H 1.09001 * 109.53296 * 304.52282 * 22 14 13 49 49 H 1.08993 * 109.53315 * 64.75639 * 22 14 13 50 50 H 0.97002 * 119.99966 * 179.97438 * 27 26 24 51 51 H 1.08999 * 109.97545 * 120.45739 * 32 23 20 52 52 H 1.09002 * 109.97019 * 241.73499 * 32 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 1 4.3908 1.2078 -0.0115 6 6 3.6142 -0.7155 -0.0034 7 6 4.8349 -1.5991 -0.0074 8 6 2.3271 -1.1331 0.0045 9 6 1.8598 -2.5658 0.0104 10 6 1.7094 -3.0473 1.4548 11 6 1.2416 -4.4798 1.4607 12 8 1.0480 -5.0589 0.4128 13 7 1.0393 -5.1179 2.6305 14 6 0.5851 -6.5106 2.6362 15 1 1.0243 -7.0367 1.7886 16 6 1.0349 -7.1848 3.9343 17 6 0.4749 -8.6194 3.9535 18 1 0.9105 -9.2427 4.7344 19 6 -1.0831 -8.4614 4.0863 20 6 -1.4205 -8.0029 2.6428 21 1 -2.4792 -8.1119 2.4075 22 6 -0.9399 -6.5462 2.5191 23 7 -0.5604 -8.8303 1.7711 24 6 -0.8290 -9.1750 0.4733 25 1 -1.7815 -8.9197 0.0329 26 6 0.1229 -9.8526 -0.2761 27 7 1.2279 -10.2813 0.2962 28 14 -0.1644 -10.1560 -2.0968 29 1 0.4917 -9.0834 -2.8869 30 1 0.4099 -11.4719 -2.4760 31 1 -1.6231 -10.1539 -2.3748 32 6 0.6335 -9.2200 2.5366 33 1 -0.3633 0.0037 1.0277 34 1 -0.3632 0.8882 -0.5171 35 1 -0.3634 -0.8918 -0.5106 36 1 5.1241 -1.8146 -1.0361 37 1 5.6536 -1.0900 0.5011 38 1 4.6100 -2.5319 0.5097 39 1 2.5905 -3.1884 -0.5060 40 1 0.8983 -2.6364 -0.4981 41 1 0.9788 -2.4247 1.9711 42 1 2.6710 -2.9766 1.9633 43 1 1.1952 -4.6551 3.4686 44 1 2.1236 -7.2283 3.9650 45 1 0.6659 -6.6162 4.7880 46 1 -1.3550 -7.6990 4.8164 47 1 -1.5578 -9.4146 4.3189 48 1 -1.3807 -5.9482 3.3167 49 1 -1.2407 -6.1441 1.5518 50 1 1.8930 -10.7551 -0.2273 51 1 0.6984 -10.3063 2.5978 52 1 1.5284 -8.8194 2.0603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325349481.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:01 Heat of formation + Delta-G solvation = 48.926035 kcal Electronic energy + Delta-G solvation = -31352.525838 eV Core-core repulsion = 27353.519312 eV Total energy + Delta-G solvation = -3999.006526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.55080 -39.95068 -38.56106 -34.57798 -34.07806 -33.54207 -32.72779 -30.74982 -30.57671 -29.48353 -28.37821 -27.90489 -27.11304 -25.27645 -24.09991 -23.06059 -21.44706 -20.32748 -19.93959 -19.37442 -19.31918 -18.56793 -17.50987 -16.98141 -16.51290 -15.79772 -15.37986 -15.29055 -14.52759 -14.38222 -14.14120 -13.83322 -13.62140 -13.52032 -13.46158 -13.22167 -12.79108 -12.74924 -12.63160 -12.56977 -12.37239 -12.06771 -11.93172 -11.88628 -11.73252 -11.64097 -11.49819 -11.21023 -11.03617 -10.68844 -10.61222 -10.54676 -10.46407 -9.91818 -9.83830 -9.63004 -9.61279 -9.42299 -9.34001 -9.21081 -8.48735 -8.47796 -8.44353 -6.71732 -5.60690 -2.91413 1.65531 2.52083 2.65599 3.10031 3.51166 3.56874 3.58040 3.62742 4.42857 4.51624 4.61923 4.79148 4.97214 5.05708 5.15744 5.19033 5.23662 5.25871 5.28564 5.45571 5.47722 5.52586 5.55602 5.58898 5.63545 5.70281 5.71112 5.79898 5.92628 5.93966 5.95321 6.08311 6.13451 6.15641 6.18064 6.19743 6.26028 6.28398 6.56232 6.61149 6.67600 6.76305 6.93101 6.98401 7.05342 7.09205 7.17168 7.52219 7.64356 7.69847 7.91612 7.97513 8.36064 8.72770 9.33459 9.94250 10.60707 11.51845 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.002802 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.476128 B = 9989.237268 C =10986.713064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.085 3.915 3 N -0.300 5.300 4 N -0.480 5.480 5 H 0.436 0.564 6 C 0.090 3.910 7 C -0.096 4.096 8 C -0.229 4.229 9 C -0.025 4.025 10 C -0.132 4.132 11 C 0.502 3.498 12 O -0.523 6.523 13 N -0.731 5.731 14 C 0.145 3.855 15 H 0.115 0.885 16 C -0.111 4.111 17 C -0.118 4.118 18 H 0.080 0.920 19 C -0.131 4.131 20 C 0.157 3.843 21 H 0.062 0.938 22 C -0.134 4.134 23 N -0.594 5.594 24 C -0.220 4.220 25 H 0.076 0.924 26 C -0.005 4.005 27 N -0.921 5.921 28 Si 0.907 3.093 29 H -0.288 1.288 30 H -0.294 1.294 31 H -0.282 1.282 32 C 0.181 3.819 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.389 0.611 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.041 0.959 49 H 0.059 0.941 50 H 0.250 0.750 51 H 0.040 0.960 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 18.819 7.497 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 N -0.124 5.124 4 N -0.188 5.188 5 H 0.279 0.721 6 C -0.038 4.038 7 C -0.154 4.154 8 C -0.241 4.241 9 C -0.064 4.064 10 C -0.172 4.172 11 C 0.287 3.713 12 O -0.398 6.398 13 N -0.382 5.382 14 C 0.042 3.958 15 H 0.133 0.867 16 C -0.149 4.149 17 C -0.138 4.138 18 H 0.098 0.902 19 C -0.169 4.169 20 C 0.048 3.952 21 H 0.080 0.920 22 C -0.175 4.175 23 N -0.319 5.319 24 C -0.349 4.349 25 H 0.094 0.906 26 C -0.201 4.201 27 N -0.569 5.569 28 Si 0.738 3.262 29 H -0.216 1.216 30 H -0.220 1.220 31 H -0.208 1.208 32 C 0.057 3.943 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.221 0.779 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.077 0.923 50 H 0.060 0.940 51 H 0.058 0.942 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.665 19.518 6.510 21.097 hybrid contribution 0.536 -0.309 -0.495 0.793 sum 5.201 19.208 6.015 20.789 Atomic orbital electron populations 1.20231 0.86683 1.03553 1.03105 1.22265 0.96982 0.90212 0.98665 1.77264 0.86489 1.22393 1.26244 1.46128 1.07254 1.04840 1.60564 0.72079 1.20929 0.97075 0.84818 1.01025 1.20507 0.92635 0.98560 1.03733 1.19789 0.91080 0.96457 1.16729 1.19594 1.02700 0.89192 0.94934 1.21646 1.02659 0.93446 0.99468 1.20660 0.77895 0.88545 0.84170 1.90811 1.50105 1.67717 1.31204 1.46269 1.69219 1.14842 1.07846 1.21188 0.95011 0.79604 1.00002 0.86749 1.21963 1.00051 0.96546 0.96376 1.23149 0.95186 0.94831 1.00596 0.90186 1.23307 0.96128 1.00192 0.97278 1.21489 0.94653 0.89413 0.89639 0.91952 1.22586 0.95151 0.99366 1.00403 1.44585 1.19733 1.57737 1.09803 1.19000 0.99456 1.30696 0.85715 0.90647 1.24732 0.96575 1.00846 0.97921 1.69951 1.09906 1.42980 1.34072 0.86174 0.77311 0.77014 0.85748 1.21574 1.22031 1.20775 1.21277 0.90473 0.97524 0.85075 0.90429 0.90985 0.89974 0.89939 0.91151 0.89207 0.90555 0.90276 0.89455 0.89686 0.77884 0.92413 0.92709 0.92108 0.92032 0.94014 0.92259 0.93976 0.94153 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.26 36.01 0.37 -0.34 16 2 C 0.09 0.99 7.22 -82.40 -0.59 0.39 16 3 N -0.30 -3.63 12.70 33.67 0.43 -3.21 16 4 N -0.48 -4.56 7.36 33.48 0.25 -4.32 16 5 H 0.44 2.73 8.96 -182.62 -1.64 1.09 16 6 C 0.09 0.87 7.21 -82.26 -0.59 0.28 16 7 C -0.10 -0.66 10.04 36.00 0.36 -0.30 16 8 C -0.23 -2.58 5.35 -105.05 -0.56 -3.15 16 9 C -0.03 -0.31 4.41 -27.88 -0.12 -0.43 16 10 C -0.13 -1.47 5.68 -27.89 -0.16 -1.63 16 11 C 0.50 7.96 7.79 -10.99 -0.09 7.87 16 12 O -0.52 -11.23 15.63 5.56 0.09 -11.14 16 13 N -0.73 -10.67 5.06 -53.80 -0.27 -10.94 16 14 C 0.15 2.64 2.08 -67.92 -0.14 2.50 16 15 H 0.11 2.77 5.33 -51.93 -0.28 2.49 16 16 C -0.11 -1.74 5.02 -26.18 -0.13 -1.87 16 17 C -0.12 -2.10 4.34 -86.93 -0.38 -2.48 16 18 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 19 C -0.13 -2.22 6.28 -23.32 -0.15 -2.37 16 20 C 0.16 3.19 4.25 -65.61 -0.28 2.91 16 21 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 22 C -0.13 -2.50 5.27 -26.28 -0.14 -2.64 16 23 N -0.59 -14.91 2.45 -161.37 -0.40 -15.31 16 24 C -0.22 -6.24 10.28 -15.06 -0.15 -6.40 16 25 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 26 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 27 N -0.92 -27.46 10.40 55.49 0.58 -26.89 16 28 Si 0.91 23.14 29.56 -169.99 -5.02 18.11 16 29 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 30 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 31 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 32 C 0.18 4.31 4.12 -2.83 -0.01 4.30 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.73 7.25 -51.93 -0.38 0.35 16 36 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.65 7.77 -51.93 -0.40 0.25 16 39 H 0.08 0.99 7.73 -51.93 -0.40 0.59 16 40 H 0.08 1.04 7.20 -51.93 -0.37 0.67 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.39 4.21 8.61 -40.82 -0.35 3.86 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.71 7.97 -51.92 -0.41 0.30 16 46 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.66 8.00 -51.93 -0.42 0.25 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 51 H 0.04 1.08 7.56 -51.93 -0.39 0.68 16 52 H 0.05 1.32 6.04 -51.93 -0.31 1.00 16 LS Contribution 405.46 15.07 6.11 6.11 Total: -1.00 -35.42 405.46 -11.06 -46.49 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -9.96 Total: 4.69 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.86 Total: -3.59 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.58 Total: -60.66 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.42 -11.06 -46.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325349481.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.413 kcal (2) G-P(sol) polarization free energy of solvation -35.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds