Wall clock time and date at job start Wed Apr 1 2020 03:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.90320 * 2 1 4 4 N 1.40081 * 108.20688 * 180.25818 * 3 2 1 5 5 H 0.96997 * 126.03887 * 179.69583 * 4 3 2 6 6 C 1.34956 * 107.92540 * 359.72538 * 4 3 2 7 7 C 1.50693 * 126.12617 * 180.02562 * 6 4 3 8 8 C 1.35316 * 107.74304 * 359.97438 * 6 4 3 9 9 C 1.50704 * 126.03497 * 180.02562 * 8 6 4 10 10 C 1.52994 * 109.47324 * 90.00422 * 9 8 6 11 11 C 1.50694 * 109.47307 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00261 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00437 * 179.97438 * 11 10 9 14 14 C 1.46492 * 120.00351 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.32537 * 34.64135 * 14 13 11 16 16 C 1.53035 * 109.32884 * 154.11000 * 14 13 11 17 17 C 1.54017 * 108.30375 * 176.69176 * 16 14 13 18 18 H 1.08995 * 113.34538 * 168.00917 * 17 16 14 19 19 C 1.57159 * 105.53336 * 292.36829 * 17 16 14 20 20 C 1.55174 * 99.59512 * 74.59309 * 19 17 16 21 21 H 1.08995 * 112.48650 * 162.91370 * 20 19 17 22 22 C 1.52988 * 109.32405 * 274.99904 * 14 13 11 23 23 N 1.47793 * 104.87307 * 40.38440 * 20 19 17 24 24 C 1.36939 * 125.85319 * 153.25442 * 23 20 19 25 25 H 1.08000 * 119.99629 * 353.89459 * 24 23 20 26 26 C 1.38809 * 119.99974 * 173.89076 * 24 23 20 27 27 N 1.31618 * 119.99866 * 6.78508 * 26 24 23 28 28 Si 1.86806 * 119.99808 * 186.78218 * 26 24 23 29 29 H 1.48502 * 109.46855 * 94.98957 * 28 26 24 30 30 H 1.48501 * 109.46954 * 214.98485 * 28 26 24 31 31 H 1.48493 * 109.47173 * 334.98866 * 28 26 24 32 32 C 1.47081 * 108.28882 * 333.26132 * 23 20 19 33 33 H 1.09004 * 109.46949 * 270.20804 * 1 2 3 34 34 H 1.09001 * 109.46629 * 30.20788 * 1 2 3 35 35 H 1.09002 * 109.47420 * 150.20847 * 1 2 3 36 36 H 1.09010 * 109.47103 * 269.96681 * 7 6 4 37 37 H 1.08999 * 109.47413 * 29.96723 * 7 6 4 38 38 H 1.09003 * 109.47277 * 149.97315 * 7 6 4 39 39 H 1.09003 * 109.47197 * 329.99711 * 9 8 6 40 40 H 1.09002 * 109.46525 * 210.00086 * 9 8 6 41 41 H 1.08997 * 109.47132 * 59.99637 * 10 9 8 42 42 H 1.09006 * 109.46810 * 299.99802 * 10 9 8 43 43 H 0.97005 * 119.99380 * 359.97438 * 13 11 10 44 44 H 1.09006 * 109.57516 * 295.48362 * 16 14 13 45 45 H 1.09007 * 109.57650 * 55.87271 * 16 14 13 46 46 H 1.09003 * 111.97464 * 316.92583 * 19 17 16 47 47 H 1.09004 * 111.21017 * 191.95551 * 19 17 16 48 48 H 1.09001 * 109.53296 * 304.52282 * 22 14 13 49 49 H 1.08993 * 109.53315 * 64.75639 * 22 14 13 50 50 H 0.97002 * 119.99966 * 179.97438 * 27 26 24 51 51 H 1.08999 * 109.97545 * 120.45739 * 32 23 20 52 52 H 1.09002 * 109.97019 * 241.73499 * 32 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 1 4.3908 1.2078 -0.0115 6 6 3.6142 -0.7155 -0.0034 7 6 4.8349 -1.5991 -0.0074 8 6 2.3271 -1.1331 0.0045 9 6 1.8598 -2.5658 0.0104 10 6 1.7094 -3.0473 1.4548 11 6 1.2416 -4.4798 1.4607 12 8 1.0480 -5.0589 0.4128 13 7 1.0393 -5.1179 2.6305 14 6 0.5851 -6.5106 2.6362 15 1 1.0243 -7.0367 1.7886 16 6 1.0349 -7.1848 3.9343 17 6 0.4749 -8.6194 3.9535 18 1 0.9105 -9.2427 4.7344 19 6 -1.0831 -8.4614 4.0863 20 6 -1.4205 -8.0029 2.6428 21 1 -2.4792 -8.1119 2.4075 22 6 -0.9399 -6.5462 2.5191 23 7 -0.5604 -8.8303 1.7711 24 6 -0.8290 -9.1750 0.4733 25 1 -1.7815 -8.9197 0.0329 26 6 0.1229 -9.8526 -0.2761 27 7 1.2279 -10.2813 0.2962 28 14 -0.1644 -10.1560 -2.0968 29 1 0.4917 -9.0834 -2.8869 30 1 0.4099 -11.4719 -2.4760 31 1 -1.6231 -10.1539 -2.3748 32 6 0.6335 -9.2200 2.5366 33 1 -0.3633 0.0037 1.0277 34 1 -0.3632 0.8882 -0.5171 35 1 -0.3634 -0.8918 -0.5106 36 1 5.1241 -1.8146 -1.0361 37 1 5.6536 -1.0900 0.5011 38 1 4.6100 -2.5319 0.5097 39 1 2.5905 -3.1884 -0.5060 40 1 0.8983 -2.6364 -0.4981 41 1 0.9788 -2.4247 1.9711 42 1 2.6710 -2.9766 1.9633 43 1 1.1952 -4.6551 3.4686 44 1 2.1236 -7.2283 3.9650 45 1 0.6659 -6.6162 4.7880 46 1 -1.3550 -7.6990 4.8164 47 1 -1.5578 -9.4146 4.3189 48 1 -1.3807 -5.9482 3.3167 49 1 -1.2407 -6.1441 1.5518 50 1 1.8930 -10.7551 -0.2273 51 1 0.6984 -10.3063 2.5978 52 1 1.5284 -8.8194 2.0603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325349481.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:00 Heat of formation + Delta-G solvation = 24.672947 kcal Electronic energy + Delta-G solvation = -31353.577531 eV Core-core repulsion = 27353.519312 eV Total energy + Delta-G solvation = -4000.058219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.34919 -41.41366 -39.99933 -36.06024 -35.12413 -34.61090 -34.28464 -32.31530 -31.73623 -30.96476 -29.77544 -28.77343 -27.91160 -27.18305 -25.12387 -24.87031 -22.77433 -21.35023 -21.10479 -21.03697 -20.20552 -20.02906 -18.90312 -18.33750 -17.74052 -17.28776 -16.62569 -16.37097 -16.21401 -15.91238 -15.39668 -15.12436 -14.96663 -14.56876 -14.45965 -14.15234 -14.09676 -13.77011 -13.71369 -13.56077 -13.41912 -13.27245 -13.22346 -13.20467 -13.12752 -13.00813 -12.88763 -12.69987 -12.60810 -12.50474 -12.10305 -11.96217 -11.86078 -11.58542 -11.40587 -11.37797 -11.06079 -10.93788 -10.64914 -10.60896 -10.19538 -9.84681 -9.31698 -8.78328 -7.81980 -5.11659 0.87802 1.39522 1.45451 1.50345 1.68033 1.84762 1.96990 2.42032 2.51033 3.37333 3.68457 3.72031 3.74910 3.83597 3.90309 4.02005 4.12268 4.17606 4.22191 4.32190 4.43746 4.47840 4.51280 4.58162 4.62400 4.68854 4.69768 4.70843 4.77355 4.79539 4.80812 4.85099 4.88766 5.02242 5.12259 5.15070 5.19406 5.23792 5.25658 5.34912 5.36390 5.37954 5.52030 5.53409 5.55540 5.72800 5.74766 5.83341 5.87637 6.26587 6.44070 6.73790 6.79788 7.17353 7.54574 7.86193 8.50665 9.28682 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.002802 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.476128 B = 9989.237268 C =10986.713064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.076 3.924 3 N -0.329 5.329 4 N -0.471 5.471 5 H 0.449 0.551 6 C 0.100 3.900 7 C -0.096 4.096 8 C -0.251 4.251 9 C -0.017 4.017 10 C -0.115 4.115 11 C 0.498 3.502 12 O -0.590 6.590 13 N -0.714 5.714 14 C 0.151 3.849 15 H 0.045 0.955 16 C -0.099 4.099 17 C -0.108 4.108 18 H 0.107 0.893 19 C -0.112 4.112 20 C 0.139 3.861 21 H 0.059 0.941 22 C -0.121 4.121 23 N -0.613 5.613 24 C -0.227 4.227 25 H 0.071 0.929 26 C -0.064 4.064 27 N -0.946 5.946 28 Si 0.962 3.038 29 H -0.299 1.299 30 H -0.290 1.290 31 H -0.268 1.268 32 C 0.190 3.810 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.414 0.586 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.060 0.940 48 H 0.086 0.914 49 H 0.018 0.982 50 H 0.242 0.758 51 H -0.003 1.003 52 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 21.140 10.774 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 N -0.153 5.153 4 N -0.181 5.181 5 H 0.295 0.705 6 C -0.030 4.030 7 C -0.154 4.154 8 C -0.262 4.262 9 C -0.056 4.056 10 C -0.154 4.154 11 C 0.286 3.714 12 O -0.470 6.470 13 N -0.366 5.366 14 C 0.046 3.954 15 H 0.064 0.936 16 C -0.137 4.137 17 C -0.127 4.127 18 H 0.125 0.875 19 C -0.150 4.150 20 C 0.032 3.968 21 H 0.077 0.923 22 C -0.162 4.162 23 N -0.337 5.337 24 C -0.357 4.357 25 H 0.089 0.911 26 C -0.256 4.256 27 N -0.596 5.596 28 Si 0.792 3.208 29 H -0.227 1.227 30 H -0.217 1.217 31 H -0.192 1.192 32 C 0.065 3.935 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.251 0.749 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.078 0.922 48 H 0.104 0.896 49 H 0.037 0.963 50 H 0.052 0.948 51 H 0.015 0.985 52 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 4.660 21.895 9.858 24.460 hybrid contribution 0.529 -0.992 -1.556 1.919 sum 5.189 20.903 8.303 23.082 Atomic orbital electron populations 1.20294 0.85620 1.03617 1.04052 1.22597 0.97949 0.90151 0.98341 1.77213 0.87559 1.23012 1.27487 1.46155 1.07139 1.05054 1.59751 0.70461 1.21289 0.97493 0.85089 0.99102 1.20611 0.92251 0.98142 1.04389 1.19739 0.91945 0.95707 1.18794 1.19409 1.01195 0.89758 0.95278 1.21600 1.04481 0.89943 0.99420 1.21528 0.76508 0.90051 0.83348 1.90796 1.52959 1.69529 1.33673 1.46029 1.68217 1.13494 1.08866 1.20799 0.94263 0.81124 0.99165 0.93628 1.21908 1.00496 0.95034 0.96269 1.23085 0.96642 0.96268 0.96740 0.87466 1.23272 0.94797 1.01552 0.95367 1.21854 0.93817 0.89853 0.91259 0.92314 1.22409 0.95681 0.98351 0.99764 1.44814 1.21052 1.58388 1.09493 1.19294 0.99120 1.29489 0.87756 0.91111 1.25456 0.96852 1.01827 1.01511 1.70160 1.10551 1.44044 1.34812 0.85282 0.77759 0.76350 0.81411 1.22710 1.21698 1.19249 1.21012 0.88757 0.95036 0.88712 0.88985 0.90530 0.90279 0.89492 0.88525 0.89441 0.92311 0.92237 0.86890 0.86922 0.74878 0.91920 0.87567 0.87306 0.92157 0.89566 0.96330 0.94826 0.98458 0.97412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.26 71.24 0.73 -0.62 16 2 C 0.08 1.68 7.22 43.10 0.31 1.99 16 3 N -0.33 -7.55 12.70 -47.38 -0.60 -8.15 16 4 N -0.47 -8.14 7.36 -48.00 -0.35 -8.49 16 5 H 0.45 4.71 8.96 -213.34 -1.91 2.80 16 6 C 0.10 1.77 7.21 41.40 0.30 2.06 16 7 C -0.10 -1.12 10.04 71.23 0.71 -0.41 16 8 C -0.25 -5.41 5.35 -20.14 -0.11 -5.51 16 9 C -0.02 -0.42 4.41 29.85 0.13 -0.29 16 10 C -0.11 -2.36 5.68 29.84 0.17 -2.19 16 11 C 0.50 15.65 7.79 87.66 0.68 16.33 16 12 O -0.59 -26.78 15.63 -3.04 -0.05 -26.83 16 13 N -0.71 -19.36 5.06 -442.52 -2.24 -21.60 16 14 C 0.15 5.37 2.08 45.00 0.09 5.46 16 15 H 0.05 2.32 5.33 -2.39 -0.01 2.30 16 16 C -0.10 -2.75 5.02 30.95 0.16 -2.59 16 17 C -0.11 -3.59 4.34 -8.41 -0.04 -3.63 16 18 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 19 C -0.11 -3.39 6.28 32.80 0.21 -3.19 16 20 C 0.14 5.55 4.25 45.79 0.19 5.75 16 21 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 22 C -0.12 -4.37 5.27 30.89 0.16 -4.21 16 23 N -0.61 -31.99 2.45 -664.45 -1.63 -33.62 16 24 C -0.23 -13.52 10.28 84.03 0.86 -12.66 16 25 H 0.07 4.14 7.84 -2.91 -0.02 4.12 16 26 C -0.06 -3.87 5.48 84.86 0.47 -3.41 16 27 N -0.95 -59.94 10.40 21.65 0.23 -59.72 16 28 Si 0.96 49.88 29.56 68.60 2.03 51.91 16 29 H -0.30 -15.89 7.11 99.48 0.71 -15.18 16 30 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 31 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 32 C 0.19 9.39 4.12 86.85 0.36 9.75 16 33 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.40 7.25 -2.39 -0.02 1.39 16 36 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 1.10 7.77 -2.39 -0.02 1.09 16 39 H 0.06 1.60 7.73 -2.39 -0.02 1.58 16 40 H 0.06 1.64 7.20 -2.39 -0.02 1.63 16 41 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.41 7.09 8.61 -92.70 -0.80 6.29 16 44 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.11 1.97 7.97 -2.38 -0.02 1.96 16 46 H 0.11 2.36 7.75 -2.39 -0.02 2.34 16 47 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.09 2.35 8.00 -2.39 -0.02 2.33 16 49 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 51 H 0.00 -0.16 7.56 -2.39 -0.02 -0.18 16 52 H 0.01 0.44 6.04 -2.39 -0.01 0.43 16 Total: -1.00 -86.85 405.46 1.01 -85.85 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -1.77 Total: 18.00 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 5.39 Total: 2.64 kcal Atomic # 7 Polarization: -126.97 SS G_CDS: -4.60 Total: -131.57 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.05 Total: -26.83 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 2.03 Total: 51.91 kcal Total: -86.85 1.01 -85.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325349481.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.518 kcal (2) G-P(sol) polarization free energy of solvation -86.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds