Wall clock time and date at job start Wed Apr 1 2020 04:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34862 * 125.96222 * 2 1 4 4 N 1.36314 * 106.68402 * 179.97438 * 3 2 1 5 5 C 1.35422 * 107.40152 * 359.95069 * 4 3 2 6 6 N 1.30086 * 108.62898 * 0.06646 * 5 4 3 7 7 C 1.51046 * 123.97997 * 180.10454 * 5 4 3 8 8 C 1.53406 * 108.20914 * 15.94096 * 7 5 4 9 9 H 1.09003 * 109.54531 * 71.13282 * 8 7 5 10 10 C 1.50702 * 109.50578 * 191.25077 * 8 7 5 11 11 O 1.21277 * 119.99857 * 101.79169 * 10 8 7 12 12 N 1.34775 * 120.00006 * 281.79166 * 10 8 7 13 13 C 1.47426 * 125.65118 * 359.89307 * 12 10 8 14 14 C 1.54902 * 104.83445 * 155.91010 * 13 12 10 15 15 C 1.55155 * 101.58476 * 37.01120 * 14 13 12 16 16 C 1.47492 * 125.59242 * 179.91321 * 12 10 8 17 17 H 1.08999 * 109.96161 * 300.33325 * 16 12 10 18 18 C 1.52993 * 110.02937 * 61.64324 * 16 12 10 19 19 N 1.46504 * 109.47572 * 298.07939 * 18 16 12 20 20 C 1.46499 * 119.99632 * 279.84807 * 19 18 16 21 21 C 1.36935 * 119.99831 * 99.84748 * 19 18 16 22 22 H 1.08001 * 120.00440 * 357.20316 * 21 19 18 23 23 C 1.38812 * 119.99820 * 177.20681 * 21 19 18 24 24 N 1.31623 * 119.99658 * 31.24015 * 23 21 19 25 25 Si 1.86801 * 120.00081 * 211.23533 * 23 21 19 26 26 H 1.48493 * 109.46936 * 95.00246 * 25 23 21 27 27 H 1.48500 * 109.46897 * 215.00081 * 25 23 21 28 28 H 1.48496 * 109.47045 * 334.99705 * 25 23 21 29 29 C 1.53139 * 109.23944 * 311.17950 * 8 7 5 30 30 C 1.46476 * 127.77344 * 179.91357 * 4 3 2 31 31 H 1.09000 * 109.47021 * 89.99932 * 1 2 3 32 32 H 1.08996 * 109.47325 * 210.00208 * 1 2 3 33 33 H 1.09001 * 109.47204 * 330.00293 * 1 2 3 34 34 H 1.07995 * 126.65338 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.71531 * 256.25995 * 7 5 4 36 36 H 1.09003 * 109.71030 * 135.61535 * 7 5 4 37 37 H 1.09002 * 110.36400 * 37.06860 * 13 12 10 38 38 H 1.09000 * 110.45959 * 274.80512 * 13 12 10 39 39 H 1.08998 * 111.00502 * 278.93127 * 14 13 12 40 40 H 1.08997 * 111.00487 * 155.08343 * 14 13 12 41 41 H 1.08997 * 110.72214 * 82.85756 * 15 14 13 42 42 H 1.08996 * 110.72467 * 205.95812 * 15 14 13 43 43 H 1.09005 * 109.47348 * 58.08175 * 18 16 12 44 44 H 1.09007 * 109.47144 * 178.07608 * 18 16 12 45 45 H 1.09003 * 109.47056 * 95.48675 * 20 19 18 46 46 H 1.09004 * 109.46958 * 215.48184 * 20 19 18 47 47 H 1.08991 * 109.47520 * 335.48377 * 20 19 18 48 48 H 0.97002 * 119.99783 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.47107 * 189.49718 * 29 8 7 50 50 H 1.09004 * 109.47209 * 309.47934 * 29 8 7 51 51 H 1.08995 * 109.58213 * 77.36359 * 30 4 3 52 52 H 1.09005 * 109.69304 * 317.01840 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0916 0.0000 4 7 3.5857 0.6415 0.0006 5 6 3.5413 -0.7120 0.0020 6 7 2.2957 -1.0869 0.0009 7 6 4.7655 -1.5967 0.0054 8 6 5.9740 -0.7414 0.4069 9 1 5.9058 -0.4876 1.4648 10 6 7.2432 -1.5141 0.1554 11 8 7.9141 -1.2752 -0.8262 12 7 7.6326 -2.4706 1.0214 13 6 6.9170 -2.8605 2.2499 14 6 7.3695 -4.3157 2.5276 15 6 8.8600 -4.2655 2.0996 16 6 8.8460 -3.2997 0.8960 17 1 8.8145 -3.8670 -0.0342 18 6 10.0922 -2.4127 0.9259 19 7 10.0642 -1.4924 -0.2136 20 6 10.4755 -1.9571 -1.5407 21 6 9.6535 -0.1979 -0.0382 22 1 9.3075 0.1325 0.9301 23 6 9.6819 0.6898 -1.1050 24 7 9.4926 0.2511 -2.3314 25 14 9.9888 2.5071 -0.8001 26 1 11.4336 2.8014 -0.9762 27 1 9.1984 3.3114 -1.7662 28 1 9.5783 2.8528 0.5845 29 6 5.9831 0.5426 -0.4275 30 6 4.8148 1.4382 -0.0009 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.9763 2.1222 -0.0004 35 1 4.9227 -2.0108 -0.9906 36 1 4.6325 -2.4056 0.7238 37 1 5.8395 -2.8223 2.0895 38 1 7.1996 -2.2106 3.0781 39 1 6.8105 -5.0225 1.9144 40 1 7.2749 -4.5590 3.5859 41 1 9.4793 -3.8696 2.9045 42 1 9.2080 -5.2532 1.7974 43 1 10.1093 -1.8413 1.8541 44 1 10.9839 -3.0368 0.8671 45 1 9.5958 -2.2615 -2.1078 46 1 10.9852 -1.1497 -2.0665 47 1 11.1513 -2.8056 -1.4352 48 1 9.5128 0.8713 -3.0770 49 1 6.9229 1.0718 -0.2698 50 1 5.8810 0.2907 -1.4832 51 1 4.9993 1.8271 1.0004 52 1 4.7146 2.2668 -0.7020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328731802.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:14 Heat of formation + Delta-G solvation = 92.456325 kcal Electronic energy + Delta-G solvation = -33340.986884 eV Core-core repulsion = 29343.867974 eV Total energy + Delta-G solvation = -3997.118911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.16634 -39.48260 -37.13265 -35.66600 -34.97927 -33.01278 -31.49755 -31.30393 -30.78746 -29.03913 -28.55881 -26.93670 -25.82964 -24.94923 -23.95225 -23.13484 -21.94946 -20.70497 -20.49778 -19.93161 -18.78550 -17.87096 -16.76733 -16.65578 -16.37206 -15.75472 -15.53844 -14.79863 -14.53018 -14.15030 -13.91505 -13.87414 -13.63474 -13.46899 -13.30092 -13.11515 -12.86002 -12.78709 -12.72003 -12.35948 -12.23018 -11.98575 -11.84043 -11.62090 -11.40022 -11.14685 -11.07836 -10.95500 -10.90661 -10.75158 -10.61505 -10.58378 -10.45785 -10.29306 -10.01236 -9.92896 -9.75799 -9.62646 -9.31871 -8.42376 -8.22485 -8.02629 -7.46057 -6.36070 -5.62258 -2.70654 2.20119 2.97054 3.22154 3.36923 3.47612 3.51948 3.82458 3.88496 4.52474 4.59569 4.74231 4.84323 4.89198 4.91162 5.07483 5.15880 5.25869 5.30932 5.38073 5.41112 5.42881 5.53707 5.56505 5.65252 5.69745 5.71242 5.82100 5.83585 5.88353 5.91655 6.02763 6.05471 6.06274 6.15944 6.18630 6.21038 6.34628 6.38441 6.43274 6.52915 6.58138 6.69486 6.88014 6.93752 6.94617 7.34124 7.36586 7.70628 7.79951 8.01217 8.29483 8.46507 8.67707 9.34079 9.64434 10.07158 10.54116 11.43926 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.004750 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.728478 B = 5893.152411 C = 7948.873442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.011 4.011 3 C -0.061 4.061 4 N -0.450 5.450 5 C 0.221 3.779 6 N -0.493 5.493 7 C -0.020 4.020 8 C -0.090 4.090 9 H 0.075 0.925 10 C 0.453 3.547 11 O -0.369 6.369 12 N -0.619 5.619 13 C 0.104 3.896 14 C -0.131 4.131 15 C -0.128 4.128 16 C 0.119 3.881 17 H 0.058 0.942 18 C 0.146 3.854 19 N -0.589 5.589 20 C 0.163 3.837 21 C -0.202 4.202 22 H 0.062 0.938 23 C 0.015 3.985 24 N -0.856 5.856 25 Si 0.854 3.146 26 H -0.292 1.292 27 H -0.296 1.296 28 H -0.284 1.284 29 C -0.110 4.110 30 C 0.101 3.899 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.169 0.831 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.020 0.980 46 H 0.060 0.940 47 H -0.014 1.014 48 H 0.243 0.757 49 H 0.106 0.894 50 H 0.083 0.917 51 H 0.082 0.918 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.060 -3.579 8.433 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.140 4.140 3 C -0.194 4.194 4 N -0.132 5.132 5 C -0.042 4.042 6 N -0.213 5.213 7 C -0.059 4.059 8 C -0.113 4.113 9 H 0.094 0.906 10 C 0.238 3.762 11 O -0.232 6.232 12 N -0.360 5.360 13 C -0.020 4.020 14 C -0.169 4.169 15 C -0.167 4.167 16 C 0.012 3.988 17 H 0.076 0.924 18 C 0.016 3.984 19 N -0.311 5.311 20 C 0.019 3.981 21 C -0.331 4.331 22 H 0.080 0.920 23 C -0.184 4.184 24 N -0.499 5.499 25 Si 0.684 3.316 26 H -0.220 1.220 27 H -0.223 1.223 28 H -0.210 1.210 29 C -0.148 4.148 30 C -0.021 4.021 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.187 0.813 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.039 0.961 46 H 0.079 0.921 47 H 0.004 0.996 48 H 0.054 0.946 49 H 0.124 0.876 50 H 0.102 0.898 51 H 0.100 0.900 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.838 -3.910 7.540 12.997 hybrid contribution 0.221 2.117 0.375 2.161 sum -9.617 -1.793 7.915 12.584 Atomic orbital electron populations 1.19950 0.88040 1.02166 1.01794 1.20733 0.96249 0.88501 1.08565 1.22256 0.83202 1.00183 1.13792 1.45452 1.06597 1.07598 1.53560 1.23272 0.94639 0.81761 1.04479 1.69931 0.99767 1.30342 1.21231 1.20155 0.86434 0.95376 1.03935 1.21152 0.94122 0.95635 1.00361 0.90621 1.19344 0.87228 0.82624 0.86986 1.91206 1.48329 1.59201 1.24504 1.48185 1.24826 1.38988 1.23996 1.22096 0.96565 0.94704 0.88637 1.22707 0.96673 0.96606 1.00953 1.22654 0.96212 0.99378 0.98435 1.22468 0.88296 0.91628 0.96377 0.92399 1.21183 0.93558 0.91764 0.91872 1.44033 1.75769 1.07840 1.03451 1.20939 0.95858 0.95117 0.86203 1.18790 1.35844 0.84247 0.94208 0.91967 1.24478 1.02735 0.95874 0.95324 1.70393 1.48957 1.32435 0.98124 0.86980 0.78705 0.88785 0.77121 1.22021 1.22294 1.20977 1.21682 0.97342 0.94602 1.01164 1.22171 0.82257 0.94734 1.02915 0.91816 0.91487 0.91744 0.81331 0.89037 0.89048 0.91886 0.93106 0.91169 0.90996 0.91169 0.91217 0.93477 0.94635 0.96135 0.92108 0.99577 0.94605 0.87600 0.89830 0.90006 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.42 36.00 0.38 -0.29 16 2 C -0.01 -0.16 7.10 -82.72 -0.59 -0.75 16 3 C -0.06 -0.83 11.55 -16.76 -0.19 -1.02 16 4 N -0.45 -6.73 3.13 -113.75 -0.36 -7.08 16 5 C 0.22 3.63 7.65 -155.24 -1.19 2.44 16 6 N -0.49 -8.45 11.24 -6.88 -0.08 -8.53 16 7 C -0.02 -0.31 5.51 -27.50 -0.15 -0.46 16 8 C -0.09 -1.48 1.82 -91.49 -0.17 -1.65 16 9 H 0.08 1.17 7.73 -51.93 -0.40 0.77 16 10 C 0.45 8.84 5.64 -10.99 -0.06 8.77 16 11 O -0.37 -8.80 8.19 5.56 0.05 -8.76 16 12 N -0.62 -10.61 3.08 -162.67 -0.50 -11.11 16 13 C 0.10 1.38 6.43 -2.53 -0.02 1.37 16 14 C -0.13 -1.47 7.09 -24.59 -0.17 -1.64 16 15 C -0.13 -1.61 6.46 -24.90 -0.16 -1.77 16 16 C 0.12 2.03 3.28 -66.70 -0.22 1.81 16 17 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 18 C 0.15 2.85 5.23 -4.04 -0.02 2.82 16 19 N -0.59 -14.06 1.73 -181.12 -0.31 -14.37 16 20 C 0.16 4.04 8.68 59.85 0.52 4.56 16 21 C -0.20 -5.17 5.85 -15.06 -0.09 -5.26 16 22 H 0.06 1.63 7.90 -52.49 -0.41 1.21 16 23 C 0.02 0.40 4.47 -17.43 -0.08 0.32 16 24 N -0.86 -23.67 9.58 55.49 0.53 -23.14 16 25 Si 0.85 20.64 29.65 -169.99 -5.04 15.60 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 27 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 C -0.11 -1.87 4.58 -26.52 -0.12 -1.99 16 30 C 0.10 1.39 6.98 -3.92 -0.03 1.36 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 36 H 0.09 1.30 6.31 -51.93 -0.33 0.98 16 37 H 0.06 0.78 5.82 -51.93 -0.30 0.48 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.93 7.92 -51.93 -0.41 0.52 16 44 H 0.04 0.65 8.03 -51.93 -0.42 0.23 16 45 H 0.02 0.55 7.08 -51.93 -0.37 0.19 16 46 H 0.06 1.65 6.11 -51.93 -0.32 1.33 16 47 H -0.01 -0.32 7.94 -51.93 -0.41 -0.73 16 48 H 0.24 6.70 8.31 -40.82 -0.34 6.36 16 49 H 0.11 2.08 8.08 -51.93 -0.42 1.66 16 50 H 0.08 1.60 8.12 -51.93 -0.42 1.18 16 51 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 52 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -31.13 391.47 -11.00 -42.13 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.83 Total: 0.74 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -2.36 Total: 8.62 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.72 Total: -64.23 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.05 Total: -8.76 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.04 Total: 15.60 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.13 -11.00 -42.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328731802.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.587 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds