Wall clock time and date at job start Wed Apr 1 2020 04:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34862 * 125.96222 * 2 1 4 4 N 1.36314 * 106.68402 * 179.97438 * 3 2 1 5 5 C 1.35422 * 107.40152 * 359.95069 * 4 3 2 6 6 N 1.30086 * 108.62898 * 0.06646 * 5 4 3 7 7 C 1.51046 * 123.97997 * 180.10454 * 5 4 3 8 8 C 1.53406 * 108.20914 * 15.94096 * 7 5 4 9 9 H 1.09003 * 109.54531 * 71.13282 * 8 7 5 10 10 C 1.50702 * 109.50578 * 191.25077 * 8 7 5 11 11 O 1.21277 * 119.99857 * 101.79169 * 10 8 7 12 12 N 1.34775 * 120.00006 * 281.79166 * 10 8 7 13 13 C 1.47426 * 125.65118 * 359.89307 * 12 10 8 14 14 C 1.54902 * 104.83445 * 155.91010 * 13 12 10 15 15 C 1.55155 * 101.58476 * 37.01120 * 14 13 12 16 16 C 1.47492 * 125.59242 * 179.91321 * 12 10 8 17 17 H 1.08999 * 109.96161 * 300.33325 * 16 12 10 18 18 C 1.52993 * 110.02937 * 61.64324 * 16 12 10 19 19 N 1.46504 * 109.47572 * 298.07939 * 18 16 12 20 20 C 1.46499 * 119.99632 * 279.84807 * 19 18 16 21 21 C 1.36935 * 119.99831 * 99.84748 * 19 18 16 22 22 H 1.08001 * 120.00440 * 357.20316 * 21 19 18 23 23 C 1.38812 * 119.99820 * 177.20681 * 21 19 18 24 24 N 1.31623 * 119.99658 * 31.24015 * 23 21 19 25 25 Si 1.86801 * 120.00081 * 211.23533 * 23 21 19 26 26 H 1.48493 * 109.46936 * 95.00246 * 25 23 21 27 27 H 1.48500 * 109.46897 * 215.00081 * 25 23 21 28 28 H 1.48496 * 109.47045 * 334.99705 * 25 23 21 29 29 C 1.53139 * 109.23944 * 311.17950 * 8 7 5 30 30 C 1.46476 * 127.77344 * 179.91357 * 4 3 2 31 31 H 1.09000 * 109.47021 * 89.99932 * 1 2 3 32 32 H 1.08996 * 109.47325 * 210.00208 * 1 2 3 33 33 H 1.09001 * 109.47204 * 330.00293 * 1 2 3 34 34 H 1.07995 * 126.65338 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.71531 * 256.25995 * 7 5 4 36 36 H 1.09003 * 109.71030 * 135.61535 * 7 5 4 37 37 H 1.09002 * 110.36400 * 37.06860 * 13 12 10 38 38 H 1.09000 * 110.45959 * 274.80512 * 13 12 10 39 39 H 1.08998 * 111.00502 * 278.93127 * 14 13 12 40 40 H 1.08997 * 111.00487 * 155.08343 * 14 13 12 41 41 H 1.08997 * 110.72214 * 82.85756 * 15 14 13 42 42 H 1.08996 * 110.72467 * 205.95812 * 15 14 13 43 43 H 1.09005 * 109.47348 * 58.08175 * 18 16 12 44 44 H 1.09007 * 109.47144 * 178.07608 * 18 16 12 45 45 H 1.09003 * 109.47056 * 95.48675 * 20 19 18 46 46 H 1.09004 * 109.46958 * 215.48184 * 20 19 18 47 47 H 1.08991 * 109.47520 * 335.48377 * 20 19 18 48 48 H 0.97002 * 119.99783 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.47107 * 189.49718 * 29 8 7 50 50 H 1.09004 * 109.47209 * 309.47934 * 29 8 7 51 51 H 1.08995 * 109.58213 * 77.36359 * 30 4 3 52 52 H 1.09005 * 109.69304 * 317.01840 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0916 0.0000 4 7 3.5857 0.6415 0.0006 5 6 3.5413 -0.7120 0.0020 6 7 2.2957 -1.0869 0.0009 7 6 4.7655 -1.5967 0.0054 8 6 5.9740 -0.7414 0.4069 9 1 5.9058 -0.4876 1.4648 10 6 7.2432 -1.5141 0.1554 11 8 7.9141 -1.2752 -0.8262 12 7 7.6326 -2.4706 1.0214 13 6 6.9170 -2.8605 2.2499 14 6 7.3695 -4.3157 2.5276 15 6 8.8600 -4.2655 2.0996 16 6 8.8460 -3.2997 0.8960 17 1 8.8145 -3.8670 -0.0342 18 6 10.0922 -2.4127 0.9259 19 7 10.0642 -1.4924 -0.2136 20 6 10.4755 -1.9571 -1.5407 21 6 9.6535 -0.1979 -0.0382 22 1 9.3075 0.1325 0.9301 23 6 9.6819 0.6898 -1.1050 24 7 9.4926 0.2511 -2.3314 25 14 9.9888 2.5071 -0.8001 26 1 11.4336 2.8014 -0.9762 27 1 9.1984 3.3114 -1.7662 28 1 9.5783 2.8528 0.5845 29 6 5.9831 0.5426 -0.4275 30 6 4.8148 1.4382 -0.0009 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.9763 2.1222 -0.0004 35 1 4.9227 -2.0108 -0.9906 36 1 4.6325 -2.4056 0.7238 37 1 5.8395 -2.8223 2.0895 38 1 7.1996 -2.2106 3.0781 39 1 6.8105 -5.0225 1.9144 40 1 7.2749 -4.5590 3.5859 41 1 9.4793 -3.8696 2.9045 42 1 9.2080 -5.2532 1.7974 43 1 10.1093 -1.8413 1.8541 44 1 10.9839 -3.0368 0.8671 45 1 9.5958 -2.2615 -2.1078 46 1 10.9852 -1.1497 -2.0665 47 1 11.1513 -2.8056 -1.4352 48 1 9.5128 0.8713 -3.0770 49 1 6.9229 1.0718 -0.2698 50 1 5.8810 0.2907 -1.4832 51 1 4.9993 1.8271 1.0004 52 1 4.7146 2.2668 -0.7020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328731802.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:13 Heat of formation + Delta-G solvation = 76.027947 kcal Electronic energy + Delta-G solvation = -33341.699272 eV Core-core repulsion = 29343.867974 eV Total energy + Delta-G solvation = -3997.831299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.32134 -40.90944 -38.46077 -37.20006 -36.60289 -34.30848 -33.22322 -32.41950 -32.05503 -30.51299 -29.80362 -28.04266 -27.81716 -26.46298 -25.17457 -24.45244 -23.36988 -22.18326 -21.68938 -21.13416 -20.04768 -19.26649 -18.64782 -17.89034 -17.66261 -17.04233 -16.86624 -16.56537 -15.90976 -15.53879 -15.40666 -15.15889 -15.04414 -14.88067 -14.64788 -14.40143 -14.15475 -13.97230 -13.84292 -13.51340 -13.48706 -13.36962 -13.19385 -13.06974 -12.82757 -12.76465 -12.59724 -12.47247 -12.34444 -12.20764 -12.11210 -12.04343 -11.87263 -11.86142 -11.67708 -11.48748 -11.42163 -10.93993 -10.48940 -10.20968 -9.88749 -9.18098 -9.12237 -8.15798 -7.59959 -4.70266 1.07921 1.41414 1.50911 1.53609 1.84383 2.06793 2.35597 2.47649 2.66114 3.31098 3.51398 3.54586 3.63950 3.68439 3.82078 3.90092 4.07440 4.10530 4.18994 4.20698 4.23398 4.29228 4.36578 4.43926 4.49011 4.56465 4.62862 4.66133 4.72613 4.80942 4.85085 4.92261 4.93781 4.97627 4.99751 5.06001 5.07914 5.15260 5.17067 5.23010 5.24430 5.35509 5.42047 5.54153 5.63029 5.71557 5.90230 5.90528 6.05730 6.20292 6.47057 7.14479 7.22410 7.35910 8.10481 8.16919 8.59362 9.46831 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.004750 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.728478 B = 5893.152411 C = 7948.873442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.033 4.033 3 C -0.054 4.054 4 N -0.452 5.452 5 C 0.198 3.802 6 N -0.519 5.519 7 C -0.006 4.006 8 C -0.080 4.080 9 H 0.093 0.907 10 C 0.458 3.542 11 O -0.425 6.425 12 N -0.624 5.624 13 C 0.097 3.903 14 C -0.119 4.119 15 C -0.117 4.117 16 C 0.119 3.881 17 H 0.030 0.970 18 C 0.142 3.858 19 N -0.600 5.600 20 C 0.186 3.814 21 C -0.183 4.183 22 H 0.056 0.944 23 C -0.027 4.027 24 N -0.889 5.889 25 Si 0.901 3.099 26 H -0.306 1.306 27 H -0.304 1.304 28 H -0.272 1.272 29 C -0.101 4.101 30 C 0.109 3.891 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.206 0.794 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.051 0.949 45 H -0.013 1.013 46 H 0.032 0.968 47 H 0.009 0.991 48 H 0.230 0.770 49 H 0.077 0.923 50 H 0.050 0.950 51 H 0.105 0.895 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.809 -3.863 11.765 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.161 4.161 3 C -0.187 4.187 4 N -0.135 5.135 5 C -0.065 4.065 6 N -0.240 5.240 7 C -0.045 4.045 8 C -0.102 4.102 9 H 0.111 0.889 10 C 0.243 3.757 11 O -0.292 6.292 12 N -0.363 5.363 13 C -0.026 4.026 14 C -0.157 4.157 15 C -0.155 4.155 16 C 0.012 3.988 17 H 0.048 0.952 18 C 0.014 3.986 19 N -0.322 5.322 20 C 0.040 3.960 21 C -0.313 4.313 22 H 0.074 0.926 23 C -0.222 4.222 24 N -0.535 5.535 25 Si 0.732 3.268 26 H -0.235 1.235 27 H -0.232 1.232 28 H -0.197 1.197 29 C -0.139 4.139 30 C -0.012 4.012 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.222 0.778 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.005 0.995 46 H 0.050 0.950 47 H 0.027 0.973 48 H 0.040 0.960 49 H 0.096 0.904 50 H 0.069 0.931 51 H 0.123 0.877 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.598 -4.224 10.957 16.505 hybrid contribution 0.660 2.069 -0.585 2.249 sum -10.937 -2.155 10.373 15.227 Atomic orbital electron populations 1.20044 0.85612 1.03363 1.02576 1.21415 0.97960 0.88151 1.08614 1.22882 0.82191 1.01683 1.11915 1.45548 1.07390 1.07232 1.53294 1.23224 0.94581 0.82532 1.06143 1.69897 1.00352 1.31938 1.21796 1.19939 0.86070 0.95505 1.02989 1.21058 0.92978 0.95103 1.01046 0.88875 1.20009 0.87384 0.82128 0.86132 1.91230 1.50237 1.61037 1.26660 1.48358 1.25161 1.38006 1.24822 1.22371 0.96830 0.96471 0.86881 1.22708 0.95148 0.94861 1.03015 1.22602 0.97744 0.98799 0.96364 1.22330 0.87091 0.91719 0.97632 0.95154 1.21386 0.95369 0.91613 0.90204 1.44227 1.75583 1.08403 1.04028 1.20546 0.94443 0.94563 0.86402 1.18757 1.34279 0.84897 0.93346 0.92576 1.24806 1.04145 0.97978 0.95311 1.70550 1.52137 1.32402 0.98437 0.86194 0.77379 0.86036 0.77147 1.23479 1.23230 1.19670 1.21452 0.97674 0.95307 0.99460 1.22141 0.80566 0.93936 1.04580 0.91175 0.91812 0.89048 0.77752 0.91289 0.87654 0.90888 0.92062 0.90919 0.87714 0.89834 0.89459 0.93328 0.93116 0.99507 0.94967 0.97257 0.96021 0.90397 0.93109 0.87663 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 10.42 71.24 0.74 -0.37 16 2 C -0.03 -0.89 7.10 41.41 0.29 -0.60 16 3 C -0.05 -1.31 11.55 83.22 0.96 -0.35 16 4 N -0.45 -12.73 3.13 -513.80 -1.61 -14.34 16 5 C 0.20 6.32 7.65 138.24 1.06 7.37 16 6 N -0.52 -17.26 11.24 -175.68 -1.98 -19.23 16 7 C -0.01 -0.18 5.51 30.09 0.17 -0.02 16 8 C -0.08 -2.60 1.82 -11.36 -0.02 -2.63 16 9 H 0.09 2.73 7.73 -2.39 -0.02 2.71 16 10 C 0.46 18.17 5.64 87.66 0.49 18.66 16 11 O -0.42 -21.26 8.19 -3.02 -0.02 -21.29 16 12 N -0.62 -20.81 3.08 -786.96 -2.42 -23.23 16 13 C 0.10 2.29 6.43 86.85 0.56 2.85 16 14 C -0.12 -2.18 7.09 31.98 0.23 -1.95 16 15 C -0.12 -2.52 6.46 31.78 0.21 -2.31 16 16 C 0.12 3.92 3.28 45.25 0.15 4.07 16 17 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 18 C 0.14 5.42 5.23 86.38 0.45 5.87 16 19 N -0.60 -29.23 1.73 -726.93 -1.26 -30.49 16 20 C 0.19 9.57 8.68 127.77 1.11 10.68 16 21 C -0.18 -9.57 5.85 84.03 0.49 -9.08 16 22 H 0.06 2.96 7.90 -2.91 -0.02 2.94 16 23 C -0.03 -1.45 4.47 84.86 0.38 -1.08 16 24 N -0.89 -52.18 9.58 21.65 0.21 -51.98 16 25 Si 0.90 43.94 29.65 68.60 2.03 45.97 16 26 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 27 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 28 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 29 C -0.10 -3.51 4.58 30.73 0.14 -3.37 16 30 C 0.11 2.84 6.98 86.47 0.60 3.45 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.21 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.07 2.43 8.11 -2.39 -0.02 2.41 16 36 H 0.11 2.90 6.31 -2.39 -0.02 2.88 16 37 H 0.07 1.59 5.82 -2.39 -0.01 1.58 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.64 7.85 -2.39 -0.02 1.62 16 42 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.05 1.84 7.92 -2.38 -0.02 1.82 16 44 H 0.05 1.78 8.03 -2.38 -0.02 1.76 16 45 H -0.01 -0.77 7.08 -2.39 -0.02 -0.79 16 46 H 0.03 1.83 6.11 -2.38 -0.01 1.81 16 47 H 0.01 0.41 7.94 -2.39 -0.02 0.39 16 48 H 0.23 13.55 8.31 -92.71 -0.77 12.78 16 49 H 0.08 3.18 8.08 -2.39 -0.02 3.16 16 50 H 0.05 2.08 8.12 -2.38 -0.02 2.06 16 51 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 52 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -72.64 391.47 3.85 -68.79 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.90 Total: 14.60 kcal Atomic # 6 Polarization: 23.19 SS G_CDS: 8.01 Total: 31.20 kcal Atomic # 7 Polarization: -132.21 SS G_CDS: -7.06 Total: -139.27 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.02 Total: -21.29 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -72.64 3.85 -68.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328731802.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.816 kcal (2) G-P(sol) polarization free energy of solvation -72.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds