Wall clock time and date at job start Wed Apr 1 2020 03:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30842 * 125.89337 * 2 1 4 4 N 1.40085 * 108.19873 * 180.02562 * 3 2 1 5 5 H 0.97007 * 126.03265 * 179.97438 * 4 3 2 6 6 C 1.34947 * 107.92953 * 359.76168 * 4 3 2 7 7 C 1.50694 * 126.12948 * 180.23878 * 6 4 3 8 8 C 1.35320 * 107.74272 * 0.38540 * 6 4 3 9 9 C 1.50697 * 126.03596 * 179.87444 * 8 6 4 10 10 C 1.50699 * 109.47268 * 269.71582 * 9 8 6 11 11 O 1.21283 * 119.99932 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99787 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99649 * 179.97438 * 12 10 9 14 14 C 1.52996 * 115.54660 * 179.97438 * 13 12 10 15 15 C 1.53041 * 109.46407 * 39.41749 * 14 13 12 16 16 C 1.53187 * 109.31222 * 181.37129 * 15 14 13 17 17 N 1.46923 * 108.77790 * 305.36434 * 16 15 14 18 18 C 1.36937 * 120.63106 * 233.59113 * 17 16 15 19 19 H 1.07999 * 120.00670 * 28.08923 * 18 17 16 20 20 C 1.38814 * 119.99803 * 208.08899 * 18 17 16 21 21 N 1.31623 * 120.00319 * 17.64661 * 20 18 17 22 22 Si 1.86803 * 119.99964 * 197.64539 * 20 18 17 23 23 H 1.48504 * 109.46901 * 94.06968 * 22 20 18 24 24 H 1.48504 * 109.47303 * 214.06646 * 22 20 18 25 25 H 1.48501 * 109.46970 * 334.06889 * 22 20 18 26 26 C 1.46928 * 118.73762 * 53.86377 * 17 16 15 27 27 C 1.53042 * 109.44689 * 159.48064 * 14 13 12 28 28 C 1.52997 * 117.49904 * 325.66795 * 13 12 10 29 29 C 1.52999 * 117.49795 * 34.33108 * 13 12 10 30 30 H 1.09002 * 109.47622 * 269.97965 * 1 2 3 31 31 H 1.09002 * 109.47590 * 29.97709 * 1 2 3 32 32 H 1.09004 * 109.47064 * 149.97473 * 1 2 3 33 33 H 1.09003 * 109.47250 * 270.17763 * 7 6 4 34 34 H 1.09007 * 109.47273 * 30.17323 * 7 6 4 35 35 H 1.08998 * 109.47422 * 150.16980 * 7 6 4 36 36 H 1.08999 * 109.46848 * 149.71353 * 9 8 6 37 37 H 1.09006 * 109.47221 * 29.72015 * 9 8 6 38 38 H 0.96997 * 120.00262 * 359.97438 * 12 10 9 39 39 H 1.09006 * 109.46226 * 279.44155 * 14 13 12 40 40 H 1.09008 * 109.49455 * 61.41812 * 15 14 13 41 41 H 1.09001 * 109.52434 * 301.34127 * 15 14 13 42 42 H 1.09007 * 109.58222 * 185.57855 * 16 15 14 43 43 H 1.08993 * 109.58972 * 65.15530 * 16 15 14 44 44 H 0.96997 * 120.00013 * 180.02562 * 21 20 18 45 45 H 1.08992 * 109.58852 * 65.92480 * 26 17 16 46 46 H 1.09003 * 109.58716 * 186.35598 * 26 17 16 47 47 H 1.08996 * 109.49676 * 298.57319 * 27 14 13 48 48 H 1.09003 * 109.49781 * 58.63871 * 27 14 13 49 49 H 1.09000 * 117.49888 * 214.99896 * 28 13 12 50 50 H 1.08993 * 117.49972 * 0.02653 * 28 13 12 51 51 H 1.09004 * 117.50108 * 359.97438 * 29 13 12 52 52 H 1.08998 * 117.49741 * 144.96895 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6086 0.6342 -0.0006 5 1 4.3907 1.2081 -0.0011 6 6 3.6142 -0.7153 0.0044 7 6 4.8349 -1.5988 0.0107 8 6 2.3271 -1.1329 -0.0006 9 6 1.8600 -2.5657 -0.0004 10 6 1.7038 -3.0434 -1.4212 11 8 1.9483 -2.2943 -2.3431 12 7 1.2925 -4.3031 -1.6672 13 6 1.1402 -4.7673 -3.0483 14 6 0.6686 -6.2138 -3.2101 15 6 -0.3955 -6.5242 -2.1548 16 6 -0.8403 -7.9831 -2.2979 17 7 -1.2785 -8.2104 -3.6817 18 6 -2.5142 -8.7389 -3.9444 19 1 -3.3272 -8.5820 -3.2511 20 6 -2.7217 -9.4765 -5.1019 21 7 -1.6944 -9.9641 -5.7647 22 14 -4.4591 -9.7772 -5.7189 23 1 -4.8167 -8.7376 -6.7172 24 1 -4.5344 -11.1183 -6.3522 25 1 -5.4073 -9.7147 -4.5777 26 6 -0.3634 -7.8654 -4.7782 27 6 0.0740 -6.4026 -4.6075 28 6 0.6668 -3.7492 -4.0876 29 6 2.1220 -4.2241 -4.0885 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 5.1338 -1.8130 -1.0154 34 1 5.6489 -1.0901 0.5275 35 1 4.6054 -2.5321 0.5248 36 1 0.9014 -2.6352 0.5137 37 1 2.5936 -3.1870 0.5133 38 1 1.0973 -4.9023 -0.9298 39 1 1.5152 -6.8883 -3.0815 40 1 -1.2529 -5.8666 -2.2984 41 1 0.0212 -6.3668 -1.1600 42 1 -1.6669 -8.1815 -1.6156 43 1 -0.0054 -8.6441 -2.0657 44 1 -1.8395 -10.4792 -6.5737 45 1 0.5097 -8.5170 -4.7442 46 1 -0.8752 -7.9861 -5.7330 47 1 -0.7877 -5.7462 -4.7280 48 1 0.8252 -6.1583 -5.3586 49 1 0.0190 -4.1098 -4.8867 50 1 0.4691 -2.7339 -3.7439 51 1 2.8810 -3.5211 -3.7453 52 1 2.4319 -4.8973 -4.8878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333193264.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:20 Heat of formation + Delta-G solvation = 57.206064 kcal Electronic energy + Delta-G solvation = -31218.863932 eV Core-core repulsion = 27220.216456 eV Total energy + Delta-G solvation = -3998.647477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.37532 -41.38083 -39.37214 -37.34922 -34.51989 -34.43927 -34.26660 -33.51910 -31.87023 -31.35083 -30.01053 -28.53787 -27.43773 -26.95743 -24.64656 -23.75272 -23.36744 -22.23145 -21.16869 -21.03445 -20.24395 -19.95052 -18.68588 -18.35521 -18.13177 -16.94653 -16.59848 -16.10137 -16.06175 -15.69804 -15.28646 -15.22529 -14.99828 -14.82818 -14.59617 -14.41988 -14.30552 -14.12625 -14.08436 -13.95107 -13.81989 -13.23671 -13.15742 -13.06030 -12.94911 -12.91853 -12.63222 -12.55235 -12.44229 -12.31100 -12.22844 -11.90388 -11.73033 -11.62304 -11.44551 -11.37898 -11.12598 -10.84753 -10.54974 -10.47436 -10.16754 -9.46045 -9.30316 -8.63662 -7.84272 -5.28292 0.93254 1.47511 1.49789 1.57918 1.64862 1.76439 2.00245 2.36781 2.53663 3.03993 3.29987 3.68714 3.72445 3.76728 3.78931 3.79407 4.06814 4.06921 4.19812 4.25133 4.31025 4.37603 4.47697 4.53412 4.58682 4.62565 4.69426 4.74416 4.79132 4.79373 4.83347 4.89317 4.93434 4.99869 5.06580 5.09058 5.11778 5.13505 5.20367 5.28275 5.29778 5.33602 5.39518 5.46987 5.58759 5.68828 5.73307 5.75451 5.82511 6.43156 6.46807 6.74750 6.76792 7.18993 7.45398 7.91939 8.42398 9.21703 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.002224 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.214841 B =12586.495995 C =12912.175862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.078 3.922 3 N -0.338 5.338 4 N -0.476 5.476 5 H 0.447 0.553 6 C 0.103 3.897 7 C -0.093 4.093 8 C -0.236 4.236 9 C -0.053 4.053 10 C 0.510 3.490 11 O -0.564 6.564 12 N -0.687 5.687 13 C 0.121 3.879 14 C -0.032 4.032 15 C -0.111 4.111 16 C 0.139 3.861 17 N -0.611 5.611 18 C -0.257 4.257 19 H 0.066 0.934 20 C -0.052 4.052 21 N -0.935 5.935 22 Si 0.961 3.039 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.267 1.267 26 C 0.177 3.823 27 C -0.119 4.119 28 C -0.186 4.186 29 C -0.174 4.174 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.417 0.583 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.248 0.752 45 H -0.002 1.002 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.062 0.938 49 H 0.092 0.908 50 H 0.089 0.911 51 H 0.095 0.905 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.737 16.712 16.093 26.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 N -0.162 5.162 4 N -0.185 5.185 5 H 0.292 0.708 6 C -0.027 4.027 7 C -0.151 4.151 8 C -0.248 4.248 9 C -0.094 4.094 10 C 0.298 3.702 11 O -0.443 6.443 12 N -0.338 5.338 13 C 0.033 3.967 14 C -0.051 4.051 15 C -0.150 4.150 16 C 0.014 3.986 17 N -0.334 5.334 18 C -0.388 4.388 19 H 0.084 0.916 20 C -0.248 4.248 21 N -0.581 5.581 22 Si 0.790 3.210 23 H -0.216 1.216 24 H -0.223 1.223 25 H -0.192 1.192 26 C 0.052 3.948 27 C -0.158 4.158 28 C -0.224 4.224 29 C -0.212 4.212 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.255 0.745 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.058 0.942 45 H 0.016 0.984 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.110 0.890 50 H 0.107 0.893 51 H 0.113 0.887 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.917 18.417 15.369 27.244 hybrid contribution -0.561 -1.066 -0.803 1.447 sum 12.356 17.351 14.566 25.805 Atomic orbital electron populations 1.20247 0.85818 1.03296 1.03924 1.22592 0.97859 0.90563 0.97811 1.77194 0.87692 1.23413 1.27910 1.46134 1.07033 1.05337 1.60014 0.70767 1.21361 0.97808 0.85037 0.98475 1.20604 0.92092 0.98553 1.03856 1.19278 0.91600 0.95300 1.18602 1.19968 1.05518 0.91744 0.92169 1.21282 0.75571 0.80751 0.92576 1.90665 1.50678 1.55751 1.47190 1.45359 1.67998 1.13678 1.06803 1.20607 1.03253 0.92833 0.79990 1.20499 0.97726 0.91058 0.95840 1.21873 0.97818 0.96967 0.98311 1.21093 0.97203 0.94467 0.85834 1.44342 1.15219 1.72686 1.01192 1.19518 0.87840 1.25110 1.06285 0.91583 1.25746 1.00309 0.97787 1.00909 1.70181 1.30516 1.38135 1.19297 0.85334 0.80834 0.76417 0.78383 1.21626 1.22319 1.19157 1.20663 0.91220 0.90820 0.92147 1.22171 0.99462 0.97867 0.96284 1.23385 0.97738 0.99527 1.01738 1.23296 0.93592 1.03177 1.01147 0.88478 0.91465 0.90424 0.90447 0.88912 0.87954 0.86156 0.85469 0.74461 0.90668 0.92854 0.89130 0.92636 0.96389 0.94250 0.98364 0.93202 0.92941 0.91902 0.88991 0.89292 0.88654 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.12 71.23 0.72 -0.58 16 2 C 0.08 1.75 7.22 43.10 0.31 2.06 16 3 N -0.34 -8.32 12.70 -47.39 -0.60 -8.92 16 4 N -0.48 -8.81 7.36 -48.00 -0.35 -9.17 16 5 H 0.45 5.42 8.96 -213.32 -1.91 3.50 16 6 C 0.10 1.75 7.21 41.40 0.30 2.04 16 7 C -0.09 -0.87 10.22 71.23 0.73 -0.14 16 8 C -0.24 -4.53 4.59 -20.15 -0.09 -4.62 16 9 C -0.05 -0.74 5.64 29.10 0.16 -0.57 16 10 C 0.51 10.69 7.53 87.66 0.66 11.35 16 11 O -0.56 -16.60 11.51 -3.04 -0.03 -16.64 16 12 N -0.69 -13.51 5.39 -422.92 -2.28 -15.79 16 13 C 0.12 3.14 2.98 3.60 0.01 3.15 16 14 C -0.03 -0.93 2.45 -10.77 -0.03 -0.96 16 15 C -0.11 -3.15 5.02 30.67 0.15 -2.99 16 16 C 0.14 5.26 6.51 86.36 0.56 5.82 16 17 N -0.61 -29.62 2.99 -698.27 -2.09 -31.70 16 18 C -0.26 -13.91 9.58 84.03 0.81 -13.10 16 19 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 20 C -0.05 -2.91 4.90 84.86 0.42 -2.49 16 21 N -0.93 -55.14 11.22 21.65 0.24 -54.89 16 22 Si 0.96 44.81 29.59 68.60 2.03 46.84 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 C 0.18 8.35 5.34 86.51 0.46 8.81 16 27 C -0.12 -4.28 4.02 30.82 0.12 -4.15 16 28 C -0.19 -5.51 8.84 30.62 0.27 -5.23 16 29 C -0.17 -4.82 9.06 30.62 0.28 -4.54 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.32 7.92 -2.38 -0.02 1.31 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.10 0.62 7.14 -2.39 -0.02 0.60 16 36 H 0.12 1.18 7.92 -2.39 -0.02 1.16 16 37 H 0.13 0.96 7.14 -2.38 -0.02 0.94 16 38 H 0.42 5.77 6.81 -92.71 -0.63 5.14 16 39 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.09 1.78 6.41 -2.39 -0.02 1.77 16 42 H 0.06 2.05 7.93 -2.38 -0.02 2.03 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 45 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.05 2.71 6.06 -2.39 -0.01 2.70 16 47 H 0.05 2.00 6.84 -2.39 -0.02 1.98 16 48 H 0.06 2.10 6.87 -2.39 -0.02 2.09 16 49 H 0.09 2.84 5.91 -2.39 -0.01 2.83 16 50 H 0.09 2.90 6.38 -2.39 -0.02 2.89 16 51 H 0.10 2.82 6.37 -2.39 -0.02 2.81 16 52 H 0.09 2.53 7.27 -2.39 -0.02 2.52 16 Total: -1.00 -75.31 400.57 1.18 -74.14 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -1.59 Total: 22.28 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 5.84 Total: -6.14 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -5.08 Total: -120.48 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.03 Total: -16.64 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -75.31 1.18 -74.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333193264.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.342 kcal (2) G-P(sol) polarization free energy of solvation -75.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds