Wall clock time and date at job start Wed Apr 1 2020 03:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30836 * 125.89733 * 2 1 4 4 N 1.40087 * 108.20246 * 180.25635 * 3 2 1 5 5 H 0.97005 * 126.03884 * 179.70253 * 4 3 2 6 6 C 1.34945 * 107.92361 * 359.72116 * 4 3 2 7 7 C 1.50705 * 126.12713 * 180.02562 * 6 4 3 8 8 C 1.35310 * 107.74838 * 359.97438 * 6 4 3 9 9 C 1.50704 * 126.04063 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47071 * 89.99888 * 9 8 6 11 11 C 1.50704 * 109.47071 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99660 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99656 * 180.02562 * 11 10 9 14 14 C 1.46508 * 119.99854 * 180.02562 * 13 11 10 15 15 C 1.51232 * 111.07153 * 68.33411 * 14 13 11 16 16 C 1.55691 * 104.60886 * 83.88526 * 15 14 13 17 17 C 1.56278 * 105.93329 * 7.24924 * 16 15 14 18 18 C 1.50517 * 101.76089 * 24.25744 * 17 16 15 19 19 H 1.09000 * 108.13485 * 66.24418 * 18 17 16 20 20 N 1.42700 * 128.16740 * 198.67346 * 18 17 16 21 21 C 1.36945 * 127.10005 * 331.70611 * 20 18 17 22 22 H 1.07999 * 120.00077 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99637 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00227 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99854 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47118 * 90.00067 * 25 23 21 27 27 H 1.48499 * 109.47293 * 210.00071 * 25 23 21 28 28 H 1.48504 * 109.47104 * 330.00316 * 25 23 21 29 29 C 1.49292 * 105.79680 * 151.96302 * 20 18 17 30 30 C 1.52138 * 111.49139 * 288.52885 * 14 13 11 31 31 H 1.08999 * 109.46735 * 270.21075 * 1 2 3 32 32 H 1.09001 * 109.46894 * 30.20911 * 1 2 3 33 33 H 1.08997 * 109.47011 * 150.20918 * 1 2 3 34 34 H 1.08998 * 109.47433 * 269.98110 * 7 6 4 35 35 H 1.09004 * 109.46679 * 29.97374 * 7 6 4 36 36 H 1.09002 * 109.47195 * 149.97076 * 7 6 4 37 37 H 1.08994 * 109.47249 * 329.99753 * 9 8 6 38 38 H 1.08998 * 109.46917 * 209.99566 * 9 8 6 39 39 H 1.09002 * 109.47491 * 59.99610 * 10 9 8 40 40 H 1.09001 * 109.47354 * 299.99984 * 10 9 8 41 41 H 0.96998 * 120.00736 * 359.97438 * 13 11 10 42 42 H 1.09002 * 110.40889 * 325.10413 * 15 14 13 43 43 H 1.08994 * 110.50787 * 202.72512 * 15 14 13 44 44 H 1.08992 * 110.16022 * 248.13301 * 16 15 14 45 45 H 1.09004 * 110.15654 * 126.36291 * 16 15 14 46 46 H 1.08993 * 110.97226 * 266.13465 * 17 16 15 47 47 H 1.09006 * 111.00494 * 142.38472 * 17 16 15 48 48 H 0.97005 * 120.00046 * 179.97438 * 24 23 21 49 49 H 1.09001 * 110.04979 * 110.36433 * 29 20 18 50 50 H 1.08998 * 110.05174 * 231.83998 * 29 20 18 51 51 H 1.08996 * 111.15571 * 43.76920 * 30 14 13 52 52 H 1.08999 * 111.14267 * 167.95412 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0060 5 1 4.3909 1.2079 -0.0114 6 6 3.6142 -0.7154 -0.0033 7 6 4.8350 -1.5990 -0.0072 8 6 2.3272 -1.1330 0.0047 9 6 1.8599 -2.5657 0.0107 10 6 1.7096 -3.0471 1.4553 11 6 1.2418 -4.4797 1.4613 12 8 1.0472 -5.0584 0.4134 13 7 1.0386 -5.1172 2.6312 14 6 0.5843 -6.5101 2.6371 15 6 1.6600 -7.4350 2.1132 16 6 2.5692 -7.7174 3.3451 17 6 1.8439 -7.0733 4.5703 18 6 0.4127 -7.0550 4.1047 19 1 0.0726 -8.0864 4.0127 20 7 -0.6691 -6.2733 4.6098 21 6 -0.8195 -5.7976 5.8851 22 1 -0.0679 -6.0071 6.6318 23 6 -1.9382 -5.0462 6.2181 24 7 -2.8545 -4.7914 5.3083 25 14 -2.1439 -4.3980 7.9579 26 1 -1.5179 -3.0555 8.0632 27 1 -3.5898 -4.2967 8.2807 28 1 -1.4873 -5.3266 8.9130 29 6 -1.6059 -6.0864 3.4625 30 6 -0.8668 -6.6249 2.1947 31 1 -0.3633 0.0038 1.0277 32 1 -0.3633 0.8881 -0.5171 33 1 -0.3633 -0.8918 -0.5106 34 1 5.1244 -1.8144 -1.0357 35 1 5.6536 -1.0898 0.5015 36 1 4.6100 -2.5318 0.5100 37 1 2.5905 -3.1884 -0.5055 38 1 0.8984 -2.6364 -0.4976 39 1 0.9790 -2.4244 1.9716 40 1 2.6712 -2.9764 1.9637 41 1 1.1938 -4.6542 3.4693 42 1 2.2306 -6.9458 1.3237 43 1 1.2204 -8.3618 1.7447 44 1 3.5472 -7.2576 3.2033 45 1 2.6766 -8.7918 3.4943 46 1 2.2080 -6.0622 4.7520 47 1 1.9564 -7.6921 5.4606 48 1 -3.6364 -4.2666 5.5411 49 1 -2.5220 -6.6521 3.6322 50 1 -1.8372 -5.0286 3.3374 51 1 -1.0639 -5.9975 1.3255 52 1 -1.1366 -7.6623 1.9971 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486160795.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:05 Heat of formation + Delta-G solvation = 56.817791 kcal Electronic energy + Delta-G solvation = -31846.373705 eV Core-core repulsion = 27847.709391 eV Total energy + Delta-G solvation = -3998.664314 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.46855 -40.39243 -38.15238 -34.44566 -34.07870 -33.46209 -32.92805 -31.71112 -30.52981 -29.70105 -27.98496 -27.19935 -26.92814 -25.76163 -24.14770 -23.80277 -20.65161 -20.38265 -20.19233 -19.55603 -19.24833 -18.60707 -17.43384 -16.62549 -16.45053 -15.72752 -15.31601 -15.25223 -14.61203 -14.57200 -14.10997 -13.92837 -13.80990 -13.72885 -13.48780 -13.38247 -12.87383 -12.58737 -12.54881 -12.49121 -12.34021 -12.30830 -11.97414 -11.86673 -11.78805 -11.39374 -11.34100 -11.01432 -10.94173 -10.90934 -10.78021 -10.47928 -10.45527 -10.28397 -10.01464 -9.93762 -9.69104 -9.48583 -9.32345 -9.07663 -8.67765 -8.40141 -8.37127 -6.87074 -5.76007 -3.10716 1.73570 2.61596 2.73916 3.17710 3.36340 3.42371 3.44154 3.78382 4.44207 4.48914 4.61147 4.65573 4.83664 5.08851 5.14078 5.20206 5.24485 5.25414 5.29803 5.38681 5.46733 5.57306 5.60423 5.62605 5.65369 5.67735 5.75307 5.83408 5.86204 5.94012 5.97039 6.00947 6.03594 6.16523 6.25542 6.28337 6.32754 6.34914 6.39101 6.45876 6.52303 6.64388 6.69416 6.84261 6.92626 7.17260 7.28075 7.51953 7.60329 7.61283 7.77173 8.16832 8.18882 8.81565 9.11992 9.78587 10.47883 11.35933 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009874 B = 0.003379 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.914558 B = 8285.626952 C = 9762.985283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.088 3.912 3 N -0.300 5.300 4 N -0.480 5.480 5 H 0.435 0.565 6 C 0.087 3.913 7 C -0.094 4.094 8 C -0.229 4.229 9 C -0.020 4.020 10 C -0.135 4.135 11 C 0.512 3.488 12 O -0.553 6.553 13 N -0.691 5.691 14 C 0.132 3.868 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.113 4.113 18 C 0.157 3.843 19 H 0.020 0.980 20 N -0.584 5.584 21 C -0.232 4.232 22 H 0.078 0.922 23 C -0.003 4.003 24 N -0.917 5.917 25 Si 0.908 3.092 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.179 3.821 30 C -0.138 4.138 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.402 0.598 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.253 0.747 49 H 0.033 0.967 50 H 0.065 0.935 51 H 0.068 0.932 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.295 4.270 -10.214 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 N -0.124 5.124 4 N -0.188 5.188 5 H 0.279 0.721 6 C -0.041 4.041 7 C -0.152 4.152 8 C -0.240 4.240 9 C -0.059 4.059 10 C -0.175 4.175 11 C 0.299 3.701 12 O -0.432 6.432 13 N -0.341 5.341 14 C 0.044 3.956 15 C -0.150 4.150 16 C -0.154 4.154 17 C -0.152 4.152 18 C 0.047 3.953 19 H 0.037 0.963 20 N -0.307 5.307 21 C -0.360 4.360 22 H 0.096 0.904 23 C -0.200 4.200 24 N -0.564 5.564 25 Si 0.739 3.261 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.055 3.945 30 C -0.177 4.177 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.238 0.762 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.052 0.948 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.971 5.240 -10.784 18.410 hybrid contribution 0.287 0.148 1.489 1.523 sum 14.258 5.389 -9.295 17.853 Atomic orbital electron populations 1.20249 0.86576 1.03397 1.03480 1.22287 0.97041 0.90183 0.98371 1.77279 0.86437 1.22396 1.26237 1.46123 1.07283 1.04808 1.60625 0.72143 1.20890 0.97001 0.84860 1.01354 1.20481 0.92724 0.98589 1.03441 1.19795 0.91057 0.96538 1.16634 1.19552 1.02304 0.89083 0.94978 1.21652 1.02908 0.93748 0.99236 1.20548 0.77422 0.88300 0.83874 1.90637 1.52611 1.68333 1.31605 1.45746 1.66916 1.13154 1.08315 1.21477 0.92602 0.81027 1.00468 1.21860 0.96877 0.98957 0.97276 1.22812 0.98207 1.00035 0.94385 1.21818 0.95686 1.00610 0.97071 1.20832 0.89466 0.94694 0.90358 0.96255 1.43659 1.18779 1.60644 1.07606 1.19003 1.04811 1.26910 0.85242 0.90374 1.24778 0.96968 1.00501 0.97737 1.69918 1.11276 1.43179 1.32008 0.86187 0.77046 0.78819 0.84081 1.21639 1.21714 1.20750 1.22022 0.90624 1.00253 0.81594 1.22778 0.94235 1.00853 0.99845 0.90107 0.91032 0.90018 0.90143 0.91197 0.89303 0.90908 0.90403 0.89035 0.89778 0.76226 0.91251 0.91369 0.92355 0.92077 0.91674 0.91911 0.93685 0.94836 0.91639 0.91352 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.26 36.01 0.37 -0.48 16 2 C 0.09 1.12 7.22 -82.40 -0.59 0.53 16 3 N -0.30 -3.97 12.70 33.67 0.43 -3.54 16 4 N -0.48 -4.94 7.36 33.48 0.25 -4.70 16 5 H 0.44 3.03 8.96 -182.60 -1.64 1.39 16 6 C 0.09 0.89 7.21 -82.26 -0.59 0.29 16 7 C -0.09 -0.64 10.04 36.01 0.36 -0.28 16 8 C -0.23 -2.74 5.35 -105.05 -0.56 -3.30 16 9 C -0.02 -0.25 4.41 -27.88 -0.12 -0.37 16 10 C -0.14 -1.72 5.68 -27.88 -0.16 -1.88 16 11 C 0.51 8.18 7.15 -10.98 -0.08 8.10 16 12 O -0.55 -10.18 14.14 5.56 0.08 -10.10 16 13 N -0.69 -11.62 4.42 -46.57 -0.21 -11.82 16 14 C 0.13 2.35 0.40 -130.70 -0.05 2.30 16 15 C -0.11 -1.71 6.02 -26.19 -0.16 -1.87 16 16 C -0.12 -1.59 6.93 -23.54 -0.16 -1.76 16 17 C -0.11 -1.83 6.46 -26.21 -0.17 -2.00 16 18 C 0.16 3.07 2.64 -68.73 -0.18 2.88 16 19 H 0.02 0.41 7.94 -51.93 -0.41 0.00 16 20 N -0.58 -13.84 3.14 -162.63 -0.51 -14.35 16 21 C -0.23 -6.03 10.29 -15.06 -0.15 -6.18 16 22 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 23 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 24 N -0.92 -25.90 10.54 55.49 0.59 -25.31 16 25 Si 0.91 21.33 29.55 -169.99 -5.02 16.30 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 29 C 0.18 4.21 5.37 -0.71 0.00 4.21 16 30 C -0.14 -2.72 6.20 -25.39 -0.16 -2.87 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.83 7.25 -51.93 -0.38 0.46 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.62 7.77 -51.93 -0.40 0.21 16 37 H 0.07 0.87 7.73 -51.93 -0.40 0.47 16 38 H 0.08 1.02 7.20 -51.93 -0.37 0.65 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.40 6.88 7.79 -40.82 -0.32 6.56 16 42 H 0.07 1.11 6.84 -51.93 -0.36 0.75 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 1.05 7.35 -51.93 -0.38 0.67 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.03 0.87 7.99 -51.93 -0.42 0.45 16 50 H 0.07 1.72 7.03 -51.93 -0.37 1.35 16 51 H 0.07 1.38 7.19 -51.93 -0.37 1.01 16 52 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 407.04 15.07 6.13 6.13 Total: -1.00 -31.74 407.04 -10.79 -42.53 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -10.01 Total: 7.71 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.51 Total: -2.85 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.54 Total: -59.72 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.74 -10.79 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486160795.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.347 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds