Wall clock time and date at job start Wed Apr 1 2020 03:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30836 * 125.89733 * 2 1 4 4 N 1.40087 * 108.20246 * 180.25635 * 3 2 1 5 5 H 0.97005 * 126.03884 * 179.70253 * 4 3 2 6 6 C 1.34945 * 107.92361 * 359.72116 * 4 3 2 7 7 C 1.50705 * 126.12713 * 180.02562 * 6 4 3 8 8 C 1.35310 * 107.74838 * 359.97438 * 6 4 3 9 9 C 1.50704 * 126.04063 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47071 * 89.99888 * 9 8 6 11 11 C 1.50704 * 109.47071 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99660 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99656 * 180.02562 * 11 10 9 14 14 C 1.46508 * 119.99854 * 180.02562 * 13 11 10 15 15 C 1.51232 * 111.07153 * 68.33411 * 14 13 11 16 16 C 1.55691 * 104.60886 * 83.88526 * 15 14 13 17 17 C 1.56278 * 105.93329 * 7.24924 * 16 15 14 18 18 C 1.50517 * 101.76089 * 24.25744 * 17 16 15 19 19 H 1.09000 * 108.13485 * 66.24418 * 18 17 16 20 20 N 1.42700 * 128.16740 * 198.67346 * 18 17 16 21 21 C 1.36945 * 127.10005 * 331.70611 * 20 18 17 22 22 H 1.07999 * 120.00077 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99637 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00227 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99854 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47118 * 90.00067 * 25 23 21 27 27 H 1.48499 * 109.47293 * 210.00071 * 25 23 21 28 28 H 1.48504 * 109.47104 * 330.00316 * 25 23 21 29 29 C 1.49292 * 105.79680 * 151.96302 * 20 18 17 30 30 C 1.52138 * 111.49139 * 288.52885 * 14 13 11 31 31 H 1.08999 * 109.46735 * 270.21075 * 1 2 3 32 32 H 1.09001 * 109.46894 * 30.20911 * 1 2 3 33 33 H 1.08997 * 109.47011 * 150.20918 * 1 2 3 34 34 H 1.08998 * 109.47433 * 269.98110 * 7 6 4 35 35 H 1.09004 * 109.46679 * 29.97374 * 7 6 4 36 36 H 1.09002 * 109.47195 * 149.97076 * 7 6 4 37 37 H 1.08994 * 109.47249 * 329.99753 * 9 8 6 38 38 H 1.08998 * 109.46917 * 209.99566 * 9 8 6 39 39 H 1.09002 * 109.47491 * 59.99610 * 10 9 8 40 40 H 1.09001 * 109.47354 * 299.99984 * 10 9 8 41 41 H 0.96998 * 120.00736 * 359.97438 * 13 11 10 42 42 H 1.09002 * 110.40889 * 325.10413 * 15 14 13 43 43 H 1.08994 * 110.50787 * 202.72512 * 15 14 13 44 44 H 1.08992 * 110.16022 * 248.13301 * 16 15 14 45 45 H 1.09004 * 110.15654 * 126.36291 * 16 15 14 46 46 H 1.08993 * 110.97226 * 266.13465 * 17 16 15 47 47 H 1.09006 * 111.00494 * 142.38472 * 17 16 15 48 48 H 0.97005 * 120.00046 * 179.97438 * 24 23 21 49 49 H 1.09001 * 110.04979 * 110.36433 * 29 20 18 50 50 H 1.08998 * 110.05174 * 231.83998 * 29 20 18 51 51 H 1.08996 * 111.15571 * 43.76920 * 30 14 13 52 52 H 1.08999 * 111.14267 * 167.95412 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0060 5 1 4.3909 1.2079 -0.0114 6 6 3.6142 -0.7154 -0.0033 7 6 4.8350 -1.5990 -0.0072 8 6 2.3272 -1.1330 0.0047 9 6 1.8599 -2.5657 0.0107 10 6 1.7096 -3.0471 1.4553 11 6 1.2418 -4.4797 1.4613 12 8 1.0472 -5.0584 0.4134 13 7 1.0386 -5.1172 2.6312 14 6 0.5843 -6.5101 2.6371 15 6 1.6600 -7.4350 2.1132 16 6 2.5692 -7.7174 3.3451 17 6 1.8439 -7.0733 4.5703 18 6 0.4127 -7.0550 4.1047 19 1 0.0726 -8.0864 4.0127 20 7 -0.6691 -6.2733 4.6098 21 6 -0.8195 -5.7976 5.8851 22 1 -0.0679 -6.0071 6.6318 23 6 -1.9382 -5.0462 6.2181 24 7 -2.8545 -4.7914 5.3083 25 14 -2.1439 -4.3980 7.9579 26 1 -1.5179 -3.0555 8.0632 27 1 -3.5898 -4.2967 8.2807 28 1 -1.4873 -5.3266 8.9130 29 6 -1.6059 -6.0864 3.4625 30 6 -0.8668 -6.6249 2.1947 31 1 -0.3633 0.0038 1.0277 32 1 -0.3633 0.8881 -0.5171 33 1 -0.3633 -0.8918 -0.5106 34 1 5.1244 -1.8144 -1.0357 35 1 5.6536 -1.0898 0.5015 36 1 4.6100 -2.5318 0.5100 37 1 2.5905 -3.1884 -0.5055 38 1 0.8984 -2.6364 -0.4976 39 1 0.9790 -2.4244 1.9716 40 1 2.6712 -2.9764 1.9637 41 1 1.1938 -4.6542 3.4693 42 1 2.2306 -6.9458 1.3237 43 1 1.2204 -8.3618 1.7447 44 1 3.5472 -7.2576 3.2033 45 1 2.6766 -8.7918 3.4943 46 1 2.2080 -6.0622 4.7520 47 1 1.9564 -7.6921 5.4606 48 1 -3.6364 -4.2666 5.5411 49 1 -2.5220 -6.6521 3.6322 50 1 -1.8372 -5.0286 3.3374 51 1 -1.0639 -5.9975 1.3255 52 1 -1.1366 -7.6623 1.9971 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486160795.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:04 Heat of formation + Delta-G solvation = 37.685917 kcal Electronic energy + Delta-G solvation = -31847.203325 eV Core-core repulsion = 27847.709391 eV Total energy + Delta-G solvation = -3999.493934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.33367 -41.83304 -39.53478 -36.13385 -35.07913 -34.31129 -34.26388 -33.51453 -31.77131 -31.00238 -28.89024 -28.49976 -28.03115 -27.18099 -25.92237 -24.93322 -22.22781 -21.64626 -21.16508 -21.05666 -20.17933 -19.97407 -18.38215 -18.26607 -17.79034 -17.32670 -16.50028 -16.38984 -16.10257 -15.80164 -15.70383 -15.44082 -14.97764 -14.84578 -14.36905 -14.15218 -14.13482 -14.02002 -13.71512 -13.52775 -13.41974 -13.26026 -13.19416 -13.01197 -12.91376 -12.86527 -12.82080 -12.65859 -12.57479 -12.14778 -12.06025 -11.98036 -11.92726 -11.75608 -11.50855 -11.37043 -11.29887 -10.97301 -10.69799 -10.47575 -10.18563 -9.77165 -9.28516 -8.83291 -7.80955 -5.16341 0.90677 1.49195 1.50010 1.58242 1.69613 1.89147 1.99779 2.48360 2.53576 3.15364 3.39288 3.71316 3.77101 3.80297 3.94963 4.01285 4.14997 4.17235 4.25215 4.33270 4.36719 4.44657 4.46954 4.51924 4.64004 4.65389 4.71458 4.74305 4.76566 4.79283 4.81602 4.87651 4.99458 5.03478 5.04675 5.12606 5.14608 5.16866 5.21964 5.29149 5.29656 5.33856 5.39403 5.53225 5.60337 5.64544 5.73199 5.75363 5.91452 6.21641 6.47378 6.75354 6.82843 7.07851 7.49926 7.80502 8.53094 9.30606 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009874 B = 0.003379 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.914558 B = 8285.626952 C = 9762.985283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.072 3.928 3 N -0.333 5.333 4 N -0.472 5.472 5 H 0.449 0.551 6 C 0.101 3.899 7 C -0.093 4.093 8 C -0.254 4.254 9 C -0.008 4.008 10 C -0.125 4.125 11 C 0.513 3.487 12 O -0.577 6.577 13 N -0.693 5.693 14 C 0.141 3.859 15 C -0.106 4.106 16 C -0.102 4.102 17 C -0.108 4.108 18 C 0.144 3.856 19 H 0.012 0.988 20 N -0.596 5.596 21 C -0.231 4.231 22 H 0.088 0.912 23 C -0.060 4.060 24 N -0.949 5.949 25 Si 0.970 3.030 26 H -0.286 1.286 27 H -0.302 1.302 28 H -0.270 1.270 29 C 0.191 3.809 30 C -0.128 4.128 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.401 0.599 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.244 0.756 49 H -0.003 1.003 50 H 0.031 0.969 51 H 0.060 0.940 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.747 3.760 -10.034 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 N -0.157 5.157 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.028 4.028 7 C -0.152 4.152 8 C -0.265 4.265 9 C -0.047 4.047 10 C -0.165 4.165 11 C 0.301 3.699 12 O -0.457 6.457 13 N -0.343 5.343 14 C 0.052 3.948 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.147 4.147 18 C 0.035 3.965 19 H 0.030 0.970 20 N -0.319 5.319 21 C -0.359 4.359 22 H 0.105 0.895 23 C -0.253 4.253 24 N -0.598 5.598 25 Si 0.800 3.200 26 H -0.213 1.213 27 H -0.229 1.229 28 H -0.194 1.194 29 C 0.067 3.933 30 C -0.167 4.167 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.237 0.763 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.054 0.946 49 H 0.015 0.985 50 H 0.050 0.950 51 H 0.079 0.921 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 17.474 4.727 -10.604 20.979 hybrid contribution -0.777 0.280 1.399 1.625 sum 16.697 5.007 -9.204 19.712 Atomic orbital electron populations 1.20263 0.86193 1.03811 1.03397 1.22557 0.97704 0.90618 0.98474 1.77212 0.87768 1.23108 1.27650 1.46165 1.06982 1.05290 1.59752 0.70488 1.21384 0.97613 0.84978 0.98857 1.20632 0.91730 0.98073 1.04718 1.19831 0.91901 0.96034 1.18694 1.19383 1.01599 0.89491 0.94206 1.21616 1.03693 0.91104 1.00045 1.21042 0.76578 0.89240 0.83058 1.90625 1.53620 1.69161 1.32300 1.45792 1.66961 1.12923 1.08646 1.21423 0.92159 0.82275 0.98903 1.21849 0.96121 0.98408 0.98092 1.22744 0.98221 1.01272 0.91715 1.21832 0.93108 1.01226 0.98526 1.21058 0.90308 0.93446 0.91725 0.97042 1.43770 1.20216 1.60907 1.07044 1.19377 1.04481 1.25692 0.86388 0.89465 1.25523 0.97125 1.01600 1.01089 1.70134 1.11676 1.44351 1.33677 0.85195 0.76135 0.78365 0.80321 1.21320 1.22910 1.19448 1.21687 0.90214 0.97709 0.83724 1.22629 0.95666 1.01019 0.97349 0.90398 0.90399 0.89828 0.88725 0.88931 0.89063 0.90416 0.92071 0.89730 0.87372 0.76345 0.91320 0.90669 0.90130 0.90118 0.91541 0.91366 0.94635 0.98456 0.95014 0.92150 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 10.26 71.24 0.73 -1.02 16 2 C 0.07 1.84 7.22 43.10 0.31 2.15 16 3 N -0.33 -8.64 12.70 -47.38 -0.60 -9.24 16 4 N -0.47 -8.93 7.36 -48.00 -0.35 -9.28 16 5 H 0.45 5.35 8.96 -213.32 -1.91 3.43 16 6 C 0.10 1.84 7.21 41.41 0.30 2.14 16 7 C -0.09 -0.95 10.04 71.24 0.72 -0.23 16 8 C -0.25 -5.79 5.35 -20.14 -0.11 -5.90 16 9 C -0.01 -0.18 4.41 29.85 0.13 -0.05 16 10 C -0.12 -3.03 5.68 29.85 0.17 -2.86 16 11 C 0.51 15.91 7.15 87.66 0.63 16.54 16 12 O -0.58 -20.78 14.14 -3.03 -0.04 -20.82 16 13 N -0.69 -22.69 4.42 -419.64 -1.85 -24.54 16 14 C 0.14 4.85 0.40 4.32 0.00 4.85 16 15 C -0.11 -2.98 6.02 30.95 0.19 -2.80 16 16 C -0.10 -2.38 6.93 32.66 0.23 -2.16 16 17 C -0.11 -3.22 6.46 30.93 0.20 -3.02 16 18 C 0.14 5.47 2.64 46.47 0.12 5.59 16 19 H 0.01 0.49 7.94 -2.39 -0.02 0.47 16 20 N -0.60 -28.61 3.14 -668.44 -2.10 -30.71 16 21 C -0.23 -12.05 10.29 84.03 0.86 -11.18 16 22 H 0.09 4.32 7.83 -2.91 -0.02 4.29 16 23 C -0.06 -3.28 5.49 84.86 0.47 -2.81 16 24 N -0.95 -55.76 10.54 21.65 0.23 -55.53 16 25 Si 0.97 44.35 29.55 68.60 2.03 46.38 16 26 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 29 C 0.19 9.40 5.37 86.99 0.47 9.87 16 30 C -0.13 -5.08 6.20 31.46 0.20 -4.89 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.78 7.25 -2.39 -0.02 1.77 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 0.94 7.77 -2.39 -0.02 0.92 16 37 H 0.08 1.73 7.73 -2.39 -0.02 1.71 16 38 H 0.06 1.62 7.20 -2.39 -0.02 1.60 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.40 13.37 7.79 -92.71 -0.72 12.65 16 42 H 0.07 1.99 6.84 -2.39 -0.02 1.97 16 43 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.07 1.96 7.35 -2.39 -0.02 1.94 16 47 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 48 H 0.24 14.17 8.31 -92.70 -0.77 13.40 16 49 H 0.00 -0.15 7.99 -2.39 -0.02 -0.17 16 50 H 0.03 1.76 7.03 -2.39 -0.02 1.74 16 51 H 0.06 2.49 7.19 -2.39 -0.02 2.48 16 52 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -70.40 407.04 1.22 -69.18 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -1.70 Total: 30.35 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.61 Total: 4.22 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -4.68 Total: -129.31 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.04 Total: -20.82 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.40 1.22 -69.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486160795.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.869 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds