Wall clock time and date at job start Wed Apr 1 2020 03:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 H 0.96994 * 126.03749 * 179.73996 * 4 3 2 6 6 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 7 7 C 1.50693 * 126.12568 * 180.02562 * 6 4 3 8 8 C 1.35319 * 107.74352 * 359.97438 * 6 4 3 9 9 C 1.50706 * 126.03437 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47116 * 90.00130 * 9 8 6 11 11 C 1.50696 * 109.47110 * 179.97438 * 10 9 8 12 12 O 1.21281 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99865 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99741 * 179.97438 * 13 11 10 15 15 C 1.53582 * 112.24603 * 297.64671 * 14 13 11 16 16 C 1.55460 * 106.05670 * 238.16341 * 15 14 13 17 17 C 1.54757 * 104.36604 * 335.35972 * 16 15 14 18 18 C 1.54775 * 103.21372 * 37.67933 * 17 16 15 19 19 H 1.09000 * 112.61729 * 85.33535 * 18 17 16 20 20 N 1.46976 * 108.68753 * 209.79966 * 18 17 16 21 21 C 1.36935 * 125.58234 * 294.13777 * 20 18 17 22 22 H 1.07998 * 119.99935 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99892 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00165 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99655 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46896 * 60.00024 * 25 23 21 27 27 H 1.48493 * 109.46676 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47046 * 299.99992 * 25 23 21 29 29 C 1.47378 * 108.83837 * 114.13403 * 20 18 17 30 30 C 1.54862 * 104.82285 * 335.30666 * 29 20 18 31 31 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 32 32 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 33 33 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 34 34 H 1.09004 * 109.47489 * 269.97053 * 7 6 4 35 35 H 1.08997 * 109.47579 * 29.97552 * 7 6 4 36 36 H 1.08998 * 109.47027 * 149.97535 * 7 6 4 37 37 H 1.09000 * 109.46646 * 209.99544 * 9 8 6 38 38 H 1.09000 * 109.47248 * 330.00261 * 9 8 6 39 39 H 1.09000 * 109.47214 * 300.00167 * 10 9 8 40 40 H 1.09008 * 109.47142 * 59.99333 * 10 9 8 41 41 H 0.96998 * 119.99578 * 0.02562 * 13 11 10 42 42 H 1.09004 * 110.01503 * 358.13922 * 15 14 13 43 43 H 1.09002 * 110.01735 * 119.52977 * 15 14 13 44 44 H 1.09002 * 110.50907 * 216.56307 * 16 15 14 45 45 H 1.09006 * 110.39231 * 94.09972 * 16 15 14 46 46 H 1.09003 * 110.66792 * 279.24625 * 17 16 15 47 47 H 1.08999 * 110.66864 * 156.11216 * 17 16 15 48 48 H 0.96996 * 119.99550 * 180.02562 * 24 23 21 49 49 H 1.08993 * 110.36847 * 216.46473 * 29 20 18 50 50 H 1.09008 * 110.36546 * 94.14199 * 29 20 18 51 51 H 1.08998 * 110.96678 * 278.95201 * 30 29 20 52 52 H 1.09004 * 110.96945 * 155.18926 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 1 4.3908 1.2080 -0.0108 6 6 3.6143 -0.7153 -0.0031 7 6 4.8351 -1.5988 -0.0070 8 6 2.3272 -1.1329 0.0048 9 6 1.8600 -2.5657 0.0109 10 6 1.7097 -3.0470 1.4555 11 6 1.2420 -4.4795 1.4616 12 8 1.0484 -5.0587 0.4137 13 7 1.0398 -5.1174 2.6316 14 6 0.5846 -6.5099 2.6375 15 6 -0.7970 -6.6727 1.9867 16 6 -1.7113 -7.3078 3.0718 17 6 -0.7314 -8.0451 4.0159 18 6 0.4891 -7.0949 4.0711 19 1 0.3783 -6.3135 4.8229 20 7 1.7008 -7.8971 4.2917 21 6 1.9858 -8.6158 5.4219 22 1 1.2896 -8.6224 6.2475 23 6 3.1696 -9.3358 5.5064 24 7 4.0183 -9.3273 4.5004 25 14 3.5588 -10.3157 7.0485 26 1 2.5019 -11.3358 7.2665 27 1 4.8718 -10.9903 6.8880 28 1 3.6115 -9.4002 8.2164 29 6 2.5587 -7.8014 3.0972 30 6 1.5889 -7.4604 1.9390 31 1 -0.3634 0.0038 1.0276 32 1 -0.3633 0.8880 -0.5172 33 1 -0.3633 -0.8919 -0.5105 34 1 5.1244 -1.8144 -1.0356 35 1 5.6537 -1.0896 0.5016 36 1 4.6102 -2.5315 0.5102 37 1 0.8985 -2.6365 -0.4975 38 1 2.5908 -3.1883 -0.5052 39 1 2.6712 -2.9761 1.9640 40 1 0.9790 -2.4243 1.9718 41 1 1.1950 -4.6543 3.4696 42 1 -1.1801 -5.7005 1.6763 43 1 -0.7282 -7.3390 1.1268 44 1 -2.4083 -8.0130 2.6189 45 1 -2.2527 -6.5323 3.6137 46 1 -0.4483 -9.0113 3.5982 47 1 -1.1696 -8.1666 5.0065 48 1 4.8453 -9.8308 4.5594 49 1 3.0546 -8.7536 2.9090 50 1 3.2951 -7.0073 3.2217 51 1 1.0879 -8.3567 1.5732 52 1 2.1115 -6.9497 1.1302 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486160797.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:12 Heat of formation + Delta-G solvation = 45.187961 kcal Electronic energy + Delta-G solvation = -31333.578471 eV Core-core repulsion = 27334.409850 eV Total energy + Delta-G solvation = -3999.168621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.55970 -40.09719 -38.12809 -34.33378 -34.10794 -33.54900 -33.29764 -31.43550 -30.62732 -29.62755 -28.12832 -27.30911 -26.68148 -25.95089 -23.94991 -23.75858 -21.05875 -20.33558 -19.95491 -19.47180 -19.28767 -18.70990 -17.50809 -16.99632 -16.64363 -15.67505 -15.40154 -15.35574 -14.88846 -14.29974 -14.12466 -13.97916 -13.69837 -13.54573 -13.49290 -13.25022 -12.92687 -12.88126 -12.64029 -12.54947 -12.50857 -12.12682 -12.11941 -11.93860 -11.73670 -11.58147 -11.13933 -11.06727 -10.96705 -10.82809 -10.64300 -10.56270 -10.50976 -10.15367 -10.04920 -9.91956 -9.70355 -9.59840 -9.43110 -9.25988 -8.64586 -8.49458 -8.46242 -6.84456 -5.63972 -3.07028 1.65529 2.50566 2.65545 2.99093 3.39321 3.43872 3.45125 3.56236 4.43005 4.47560 4.50117 4.80426 4.85004 5.01467 5.05164 5.15648 5.17432 5.20225 5.25488 5.35319 5.43324 5.50841 5.52683 5.53154 5.59898 5.68442 5.69161 5.76017 5.85477 5.90225 5.93245 6.03348 6.09230 6.14202 6.18004 6.21424 6.32837 6.39695 6.45459 6.54091 6.57430 6.63279 6.81811 6.83297 7.03387 7.09006 7.19258 7.51511 7.56274 7.65206 7.87101 7.93952 8.37934 8.61622 9.22295 9.83344 10.47845 11.38384 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.002627 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.236349 B =10657.956288 C =11912.762972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.084 3.916 3 N -0.300 5.300 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.092 3.908 7 C -0.097 4.097 8 C -0.232 4.232 9 C -0.022 4.022 10 C -0.135 4.135 11 C 0.512 3.488 12 O -0.540 6.540 13 N -0.707 5.707 14 C 0.160 3.840 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.128 4.128 18 C 0.161 3.839 19 H 0.045 0.955 20 N -0.596 5.596 21 C -0.220 4.220 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.913 3.087 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.153 3.847 30 C -0.141 4.141 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.398 0.602 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.252 0.748 49 H 0.107 0.893 50 H 0.008 0.992 51 H 0.065 0.935 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 16.657 -8.518 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 N -0.124 5.124 4 N -0.187 5.187 5 H 0.280 0.720 6 C -0.036 4.036 7 C -0.155 4.155 8 C -0.243 4.243 9 C -0.060 4.060 10 C -0.175 4.175 11 C 0.298 3.702 12 O -0.417 6.417 13 N -0.357 5.357 14 C 0.074 3.926 15 C -0.149 4.149 16 C -0.163 4.163 17 C -0.169 4.169 18 C 0.053 3.947 19 H 0.063 0.937 20 N -0.320 5.320 21 C -0.348 4.348 22 H 0.094 0.906 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.743 3.257 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 C 0.028 3.972 30 C -0.181 4.181 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.232 0.768 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.124 0.876 50 H 0.026 0.974 51 H 0.084 0.916 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.228 17.353 -9.180 20.082 hybrid contribution 0.884 -0.655 1.371 1.758 sum -3.344 16.698 -7.809 18.735 Atomic orbital electron populations 1.20216 0.86748 1.03403 1.03110 1.22249 0.96942 0.90244 0.98786 1.77266 0.86512 1.22411 1.26199 1.46137 1.07254 1.04881 1.60435 0.72029 1.20951 0.97109 0.84816 1.00738 1.20519 0.92683 0.98679 1.03660 1.19764 0.91083 0.96424 1.17037 1.19560 1.02405 0.89260 0.94818 1.21669 1.03072 0.93242 0.99540 1.20595 0.77283 0.88491 0.83841 1.90673 1.51411 1.68210 1.31451 1.45959 1.68230 1.13221 1.08316 1.21635 0.93846 0.80316 0.96824 1.22480 0.94009 1.00540 0.97843 1.22571 0.97591 0.99071 0.97040 1.22915 0.95796 0.99781 0.98368 1.21793 0.88749 0.92425 0.91714 0.93708 1.44525 1.17471 1.54257 1.15750 1.18987 1.02322 1.20992 0.92531 0.90621 1.24775 0.96906 1.00818 0.98082 1.69798 1.11223 1.45787 1.30092 0.86186 0.77315 0.79869 0.82313 1.21190 1.21659 1.21322 1.21961 0.90529 1.02083 0.82589 1.23320 0.98258 0.97340 0.99163 0.90419 0.91019 0.90109 0.89973 0.91058 0.89086 0.90460 0.90619 0.89340 0.89342 0.76822 0.92227 0.91310 0.92354 0.92439 0.90746 0.92417 0.93745 0.87566 0.97431 0.91603 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.26 36.01 0.37 -0.26 16 2 C 0.08 0.93 7.22 -82.40 -0.59 0.34 16 3 N -0.30 -3.56 12.70 33.67 0.43 -3.13 16 4 N -0.48 -4.52 7.36 33.48 0.25 -4.27 16 5 H 0.44 2.75 8.96 -182.61 -1.64 1.12 16 6 C 0.09 0.88 7.21 -82.26 -0.59 0.29 16 7 C -0.10 -0.68 10.04 36.00 0.36 -0.32 16 8 C -0.23 -2.48 5.35 -105.05 -0.56 -3.04 16 9 C -0.02 -0.23 4.41 -27.88 -0.12 -0.36 16 10 C -0.13 -1.46 5.68 -27.89 -0.16 -1.62 16 11 C 0.51 7.40 7.02 -10.98 -0.08 7.32 16 12 O -0.54 -9.43 13.79 5.56 0.08 -9.36 16 13 N -0.71 -10.68 5.22 -45.35 -0.24 -10.92 16 14 C 0.16 2.81 0.74 -129.37 -0.10 2.71 16 15 C -0.11 -1.75 5.41 -25.12 -0.14 -1.89 16 16 C -0.12 -1.84 6.87 -24.50 -0.17 -2.01 16 17 C -0.13 -2.30 6.22 -24.87 -0.15 -2.45 16 18 C 0.16 3.16 3.67 -65.60 -0.24 2.92 16 19 H 0.05 0.87 7.96 -51.93 -0.41 0.45 16 20 N -0.60 -14.47 3.03 -161.13 -0.49 -14.96 16 21 C -0.22 -5.87 10.01 -15.06 -0.15 -6.02 16 22 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -26.37 10.07 55.49 0.56 -25.82 16 25 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 C 0.15 3.69 5.91 -2.58 -0.02 3.67 16 30 C -0.14 -2.86 5.71 -24.74 -0.14 -3.01 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.61 7.25 -51.93 -0.38 0.24 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.69 7.77 -51.93 -0.40 0.29 16 37 H 0.08 0.87 7.20 -51.93 -0.37 0.49 16 38 H 0.08 0.87 7.73 -51.93 -0.40 0.47 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.40 5.35 8.48 -40.82 -0.35 5.00 16 42 H 0.06 0.92 7.58 -51.93 -0.39 0.53 16 43 H 0.07 1.15 7.37 -51.93 -0.38 0.76 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.11 2.92 5.82 -51.93 -0.30 2.62 16 50 H 0.01 0.20 8.14 -51.92 -0.42 -0.23 16 51 H 0.07 1.35 7.63 -51.93 -0.40 0.95 16 52 H 0.07 1.40 6.53 -51.93 -0.34 1.07 16 LS Contribution 406.20 15.07 6.12 6.12 Total: -1.00 -32.55 406.20 -10.85 -43.41 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -9.96 Total: 6.37 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.58 Total: -4.10 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.51 Total: -59.09 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.55 -10.85 -43.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486160797.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.596 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds