Wall clock time and date at job start Wed Apr 1 2020 03:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 H 0.96994 * 126.03749 * 179.73996 * 4 3 2 6 6 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 7 7 C 1.50693 * 126.12568 * 180.02562 * 6 4 3 8 8 C 1.35319 * 107.74352 * 359.97438 * 6 4 3 9 9 C 1.50706 * 126.03437 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47116 * 90.00130 * 9 8 6 11 11 C 1.50696 * 109.47110 * 179.97438 * 10 9 8 12 12 O 1.21281 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99865 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99741 * 179.97438 * 13 11 10 15 15 C 1.53582 * 112.24603 * 297.64671 * 14 13 11 16 16 C 1.55460 * 106.05670 * 238.16341 * 15 14 13 17 17 C 1.54757 * 104.36604 * 335.35972 * 16 15 14 18 18 C 1.54775 * 103.21372 * 37.67933 * 17 16 15 19 19 H 1.09000 * 112.61729 * 85.33535 * 18 17 16 20 20 N 1.46976 * 108.68753 * 209.79966 * 18 17 16 21 21 C 1.36935 * 125.58234 * 294.13777 * 20 18 17 22 22 H 1.07998 * 119.99935 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99892 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00165 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99655 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46896 * 60.00024 * 25 23 21 27 27 H 1.48493 * 109.46676 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47046 * 299.99992 * 25 23 21 29 29 C 1.47378 * 108.83837 * 114.13403 * 20 18 17 30 30 C 1.54862 * 104.82285 * 335.30666 * 29 20 18 31 31 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 32 32 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 33 33 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 34 34 H 1.09004 * 109.47489 * 269.97053 * 7 6 4 35 35 H 1.08997 * 109.47579 * 29.97552 * 7 6 4 36 36 H 1.08998 * 109.47027 * 149.97535 * 7 6 4 37 37 H 1.09000 * 109.46646 * 209.99544 * 9 8 6 38 38 H 1.09000 * 109.47248 * 330.00261 * 9 8 6 39 39 H 1.09000 * 109.47214 * 300.00167 * 10 9 8 40 40 H 1.09008 * 109.47142 * 59.99333 * 10 9 8 41 41 H 0.96998 * 119.99578 * 0.02562 * 13 11 10 42 42 H 1.09004 * 110.01503 * 358.13922 * 15 14 13 43 43 H 1.09002 * 110.01735 * 119.52977 * 15 14 13 44 44 H 1.09002 * 110.50907 * 216.56307 * 16 15 14 45 45 H 1.09006 * 110.39231 * 94.09972 * 16 15 14 46 46 H 1.09003 * 110.66792 * 279.24625 * 17 16 15 47 47 H 1.08999 * 110.66864 * 156.11216 * 17 16 15 48 48 H 0.96996 * 119.99550 * 180.02562 * 24 23 21 49 49 H 1.08993 * 110.36847 * 216.46473 * 29 20 18 50 50 H 1.09008 * 110.36546 * 94.14199 * 29 20 18 51 51 H 1.08998 * 110.96678 * 278.95201 * 30 29 20 52 52 H 1.09004 * 110.96945 * 155.18926 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 1 4.3908 1.2080 -0.0108 6 6 3.6143 -0.7153 -0.0031 7 6 4.8351 -1.5988 -0.0070 8 6 2.3272 -1.1329 0.0048 9 6 1.8600 -2.5657 0.0109 10 6 1.7097 -3.0470 1.4555 11 6 1.2420 -4.4795 1.4616 12 8 1.0484 -5.0587 0.4137 13 7 1.0398 -5.1174 2.6316 14 6 0.5846 -6.5099 2.6375 15 6 -0.7970 -6.6727 1.9867 16 6 -1.7113 -7.3078 3.0718 17 6 -0.7314 -8.0451 4.0159 18 6 0.4891 -7.0949 4.0711 19 1 0.3783 -6.3135 4.8229 20 7 1.7008 -7.8971 4.2917 21 6 1.9858 -8.6158 5.4219 22 1 1.2896 -8.6224 6.2475 23 6 3.1696 -9.3358 5.5064 24 7 4.0183 -9.3273 4.5004 25 14 3.5588 -10.3157 7.0485 26 1 2.5019 -11.3358 7.2665 27 1 4.8718 -10.9903 6.8880 28 1 3.6115 -9.4002 8.2164 29 6 2.5587 -7.8014 3.0972 30 6 1.5889 -7.4604 1.9390 31 1 -0.3634 0.0038 1.0276 32 1 -0.3633 0.8880 -0.5172 33 1 -0.3633 -0.8919 -0.5105 34 1 5.1244 -1.8144 -1.0356 35 1 5.6537 -1.0896 0.5016 36 1 4.6102 -2.5315 0.5102 37 1 0.8985 -2.6365 -0.4975 38 1 2.5908 -3.1883 -0.5052 39 1 2.6712 -2.9761 1.9640 40 1 0.9790 -2.4243 1.9718 41 1 1.1950 -4.6543 3.4696 42 1 -1.1801 -5.7005 1.6763 43 1 -0.7282 -7.3390 1.1268 44 1 -2.4083 -8.0130 2.6189 45 1 -2.2527 -6.5323 3.6137 46 1 -0.4483 -9.0113 3.5982 47 1 -1.1696 -8.1666 5.0065 48 1 4.8453 -9.8308 4.5594 49 1 3.0546 -8.7536 2.9090 50 1 3.2951 -7.0073 3.2217 51 1 1.0879 -8.3567 1.5732 52 1 2.1115 -6.9497 1.1302 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486160797.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:11 Heat of formation + Delta-G solvation = 25.102242 kcal Electronic energy + Delta-G solvation = -31334.449453 eV Core-core repulsion = 27334.409850 eV Total energy + Delta-G solvation = -4000.039603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.32056 -41.47866 -39.50302 -35.99642 -35.08315 -34.59874 -34.25499 -33.27078 -31.75219 -30.98208 -28.88148 -28.36099 -28.13179 -27.28475 -25.68572 -24.85979 -22.52806 -21.51321 -21.08297 -20.77951 -20.22108 -20.02857 -18.85444 -18.29759 -17.85645 -17.06096 -16.79929 -16.45513 -16.14731 -15.79748 -15.34295 -15.21059 -14.88911 -14.66410 -14.50751 -14.31323 -14.12120 -13.92648 -13.74859 -13.55979 -13.39004 -13.25547 -13.19914 -13.06087 -12.88363 -12.86369 -12.72553 -12.65961 -12.60894 -12.23741 -12.04922 -11.94259 -11.84288 -11.64961 -11.52459 -11.42159 -11.35891 -11.20079 -10.68804 -10.57488 -10.17457 -9.82217 -9.28523 -8.82937 -7.71013 -5.15500 0.90722 1.49004 1.51417 1.57515 1.71307 1.83408 1.99282 2.36869 2.53775 3.38021 3.43636 3.68210 3.74942 3.77380 3.98257 4.01837 4.03418 4.16797 4.24953 4.34579 4.42249 4.45445 4.52036 4.53301 4.61853 4.65779 4.70953 4.73527 4.79557 4.81899 4.85185 4.85485 4.98219 5.04115 5.05553 5.13941 5.15220 5.22105 5.23433 5.28029 5.30492 5.36353 5.40204 5.50970 5.56152 5.68591 5.77688 5.80692 5.89986 6.34525 6.45502 6.74535 6.76550 7.15154 7.44620 7.83863 8.48001 9.29944 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.002627 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.236349 B =10657.956288 C =11912.762972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.076 3.924 3 N -0.332 5.332 4 N -0.474 5.474 5 H 0.448 0.552 6 C 0.097 3.903 7 C -0.096 4.096 8 C -0.250 4.250 9 C -0.012 4.012 10 C -0.123 4.123 11 C 0.512 3.488 12 O -0.570 6.570 13 N -0.706 5.706 14 C 0.171 3.829 15 C -0.103 4.103 16 C -0.110 4.110 17 C -0.125 4.125 18 C 0.153 3.847 19 H 0.057 0.943 20 N -0.612 5.612 21 C -0.224 4.224 22 H 0.084 0.916 23 C -0.069 4.069 24 N -0.951 5.951 25 Si 0.976 3.024 26 H -0.278 1.278 27 H -0.299 1.299 28 H -0.278 1.278 29 C 0.163 3.837 30 C -0.129 4.129 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.408 0.592 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.064 0.936 48 H 0.244 0.756 49 H 0.069 0.931 50 H -0.017 1.017 51 H 0.060 0.940 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.838 18.077 -7.844 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 N -0.156 5.156 4 N -0.184 5.184 5 H 0.294 0.706 6 C -0.033 4.033 7 C -0.154 4.154 8 C -0.262 4.262 9 C -0.051 4.051 10 C -0.163 4.163 11 C 0.300 3.700 12 O -0.450 6.450 13 N -0.357 5.357 14 C 0.083 3.917 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.165 4.165 18 C 0.046 3.954 19 H 0.075 0.925 20 N -0.336 5.336 21 C -0.353 4.353 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.804 3.196 26 H -0.204 1.204 27 H -0.225 1.225 28 H -0.204 1.204 29 C 0.038 3.962 30 C -0.168 4.168 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.243 0.757 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.054 0.946 49 H 0.087 0.913 50 H 0.001 0.999 51 H 0.078 0.922 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.774 18.820 -8.490 21.439 hybrid contribution 1.392 -1.072 1.132 2.090 sum -4.381 17.748 -7.359 19.706 Atomic orbital electron populations 1.20305 0.85315 1.03906 1.03952 1.22662 0.98088 0.90096 0.98205 1.77216 0.87522 1.23267 1.27563 1.46176 1.07174 1.05126 1.59879 0.70637 1.21312 0.97660 0.85051 0.99264 1.20595 0.92281 0.98089 1.04473 1.19805 0.91665 0.96141 1.18544 1.19413 1.01824 0.89303 0.94528 1.21636 1.03932 0.90694 1.00012 1.21194 0.76231 0.89605 0.82934 1.90665 1.52643 1.69207 1.32457 1.45934 1.68351 1.12171 1.09258 1.21431 0.94059 0.81076 0.95101 1.22414 0.92962 1.01074 0.97784 1.22505 0.96830 0.99569 0.95865 1.22781 0.95829 0.98361 0.99527 1.22060 0.87544 0.92651 0.93111 0.92542 1.44717 1.18978 1.54766 1.15148 1.19361 1.02171 1.20469 0.93316 0.89844 1.25572 0.97226 1.02449 1.00890 1.70060 1.11364 1.46830 1.31856 0.85187 0.76580 0.78556 0.79227 1.20450 1.22534 1.20436 1.21613 0.90960 0.99218 0.84392 1.23114 0.98084 0.97997 0.97625 0.89322 0.90629 0.89492 0.89023 0.89152 0.89655 0.90929 0.91735 0.88397 0.87186 0.75677 0.91061 0.92240 0.90601 0.89976 0.93450 0.91686 0.94643 0.91322 0.99899 0.92156 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.26 71.24 0.73 -0.42 16 2 C 0.08 1.57 7.22 43.10 0.31 1.88 16 3 N -0.33 -7.50 12.70 -47.38 -0.60 -8.10 16 4 N -0.47 -8.32 7.36 -48.00 -0.35 -8.67 16 5 H 0.45 5.04 8.96 -213.34 -1.91 3.13 16 6 C 0.10 1.70 7.21 41.40 0.30 2.00 16 7 C -0.10 -1.19 10.04 71.23 0.71 -0.48 16 8 C -0.25 -5.01 5.35 -20.14 -0.11 -5.12 16 9 C -0.01 -0.24 4.41 29.85 0.13 -0.11 16 10 C -0.12 -2.42 5.68 29.85 0.17 -2.25 16 11 C 0.51 14.06 7.02 87.65 0.62 14.67 16 12 O -0.57 -19.41 13.79 -3.03 -0.04 -19.45 16 13 N -0.71 -20.20 5.22 -415.78 -2.17 -22.37 16 14 C 0.17 5.80 0.74 5.19 0.00 5.80 16 15 C -0.10 -3.06 5.41 31.64 0.17 -2.89 16 16 C -0.11 -2.88 6.87 32.04 0.22 -2.66 16 17 C -0.12 -4.27 6.22 31.80 0.20 -4.07 16 18 C 0.15 5.82 3.67 46.24 0.17 5.99 16 19 H 0.06 2.05 7.96 -2.39 -0.02 2.03 16 20 N -0.61 -30.03 3.03 -663.68 -2.01 -32.04 16 21 C -0.22 -12.03 10.01 84.04 0.84 -11.19 16 22 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 23 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 24 N -0.95 -56.44 10.07 21.65 0.22 -56.22 16 25 Si 0.98 45.03 29.55 68.60 2.03 47.06 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 29 C 0.16 8.17 5.91 86.85 0.51 8.69 16 30 C -0.13 -5.30 5.71 31.89 0.18 -5.12 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.18 7.25 -2.39 -0.02 1.16 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 1.19 7.77 -2.39 -0.02 1.17 16 37 H 0.07 1.54 7.20 -2.39 -0.02 1.52 16 38 H 0.06 1.45 7.73 -2.39 -0.02 1.43 16 39 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.41 10.12 8.48 -92.71 -0.79 9.33 16 42 H 0.07 1.98 7.58 -2.38 -0.02 1.96 16 43 H 0.06 1.89 7.37 -2.39 -0.02 1.87 16 44 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.05 1.87 8.09 -2.39 -0.02 1.85 16 47 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.24 14.22 8.31 -92.71 -0.77 13.44 16 49 H 0.07 3.98 5.82 -2.39 -0.01 3.97 16 50 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 51 H 0.06 2.52 7.63 -2.39 -0.02 2.50 16 52 H 0.06 2.69 6.53 -2.38 -0.02 2.68 16 Total: -1.00 -71.74 406.20 0.94 -70.80 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -1.76 Total: 27.66 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 5.63 Total: 1.33 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -4.92 Total: -127.41 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.04 Total: -19.45 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.74 0.94 -70.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486160797.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.903 kcal (2) G-P(sol) polarization free energy of solvation -71.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds