Wall clock time and date at job start Wed Apr 1 2020 03:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30839 * 125.89464 * 2 1 4 4 N 1.40094 * 108.20063 * 180.25397 * 3 2 1 5 5 H 0.97000 * 126.03596 * 179.68741 * 4 3 2 6 6 C 1.34945 * 107.92438 * 359.71765 * 4 3 2 7 7 C 1.50697 * 126.12475 * 180.02562 * 6 4 3 8 8 C 1.35312 * 107.74760 * 359.97438 * 6 4 3 9 9 C 1.50700 * 126.03979 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47035 * 90.00103 * 9 8 6 11 11 H 1.09001 * 109.47338 * 305.00021 * 10 9 8 12 12 C 1.52996 * 109.47169 * 65.00275 * 10 9 8 13 13 C 1.50703 * 109.47201 * 185.00056 * 10 9 8 14 14 O 1.21284 * 119.99833 * 359.97438 * 13 10 9 15 15 N 1.34774 * 120.00222 * 179.97438 * 13 10 9 16 16 C 1.46504 * 119.99933 * 179.97438 * 15 13 10 17 17 C 1.50708 * 109.46657 * 179.72470 * 16 15 13 18 18 C 1.29456 * 117.69229 * 95.00386 * 17 16 15 19 19 C 1.50321 * 123.64939 * 180.85447 * 18 17 16 20 20 N 1.47009 * 109.16464 * 349.02398 * 19 18 17 21 21 C 1.36942 * 121.37252 * 222.96882 * 20 19 18 22 22 H 1.07997 * 119.99985 * 155.96612 * 21 20 19 23 23 C 1.38811 * 119.99754 * 335.96581 * 21 20 19 24 24 N 1.31620 * 120.00317 * 344.52153 * 23 21 20 25 25 Si 1.86803 * 119.99738 * 164.52377 * 23 21 20 26 26 H 1.48498 * 109.47067 * 60.00113 * 25 23 21 27 27 H 1.48502 * 109.46888 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47509 * 299.99743 * 25 23 21 29 29 C 1.47331 * 117.25507 * 42.94476 * 20 19 18 30 30 C 1.49961 * 117.69271 * 274.73706 * 17 16 15 31 31 H 1.08995 * 109.47378 * 270.21519 * 1 2 3 32 32 H 1.08998 * 109.47058 * 30.22211 * 1 2 3 33 33 H 1.09007 * 109.46622 * 150.22004 * 1 2 3 34 34 H 1.08999 * 109.47069 * 269.97018 * 7 6 4 35 35 H 1.08994 * 109.47516 * 29.97102 * 7 6 4 36 36 H 1.09005 * 109.47213 * 149.97238 * 7 6 4 37 37 H 1.09004 * 109.47412 * 330.00098 * 9 8 6 38 38 H 1.08999 * 109.47421 * 209.99672 * 9 8 6 39 39 H 1.09001 * 109.47202 * 299.99557 * 12 10 9 40 40 H 1.08998 * 109.47470 * 60.00103 * 12 10 9 41 41 H 1.09001 * 109.47292 * 180.02562 * 12 10 9 42 42 H 0.97005 * 119.99991 * 359.72758 * 15 13 10 43 43 H 1.08995 * 109.47252 * 299.72022 * 16 15 13 44 44 H 1.08991 * 109.46988 * 59.72647 * 16 15 13 45 45 H 1.07998 * 118.17736 * 0.87426 * 18 17 16 46 46 H 1.08997 * 109.51993 * 108.92352 * 19 18 17 47 47 H 1.09000 * 109.52505 * 229.11574 * 19 18 17 48 48 H 0.97000 * 119.99918 * 179.97438 * 24 23 21 49 49 H 1.09005 * 109.77962 * 57.80856 * 29 20 19 50 50 H 1.08998 * 109.78397 * 178.61808 * 29 20 19 51 51 H 1.09000 * 109.31663 * 281.29220 * 30 17 16 52 52 H 1.09001 * 109.31724 * 40.72456 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6341 -0.0059 5 1 4.3908 1.2080 -0.0115 6 6 3.6142 -0.7153 -0.0031 7 6 4.8350 -1.5988 -0.0069 8 6 2.3272 -1.1329 0.0049 9 6 1.8600 -2.5657 0.0110 10 6 1.7097 -3.0469 1.4556 11 1 2.6476 -2.8933 1.9893 12 6 0.5959 -2.2551 2.1436 13 6 1.3618 -4.5132 1.4630 14 8 1.2451 -5.1140 0.4160 15 7 1.1803 -5.1569 2.6332 16 6 0.8416 -6.5822 2.6403 17 6 0.7009 -7.0579 4.0634 18 6 -0.4873 -7.0759 4.5770 19 6 -0.7786 -7.5069 5.9873 20 7 0.4231 -8.1316 6.5590 21 6 0.3449 -9.2786 7.3032 22 1 1.2038 -9.9279 7.3864 23 6 -0.8385 -9.6065 7.9506 24 7 -1.7756 -8.6961 8.1100 25 14 -1.1008 -11.3399 8.5955 26 1 -0.0464 -11.6629 9.5900 27 1 -2.4347 -11.4309 9.2418 28 1 -1.0298 -12.3037 7.4680 29 6 1.7150 -7.4734 6.2979 30 6 1.9464 -7.4827 4.7826 31 1 -0.3634 0.0039 1.0276 32 1 -0.3633 0.8880 -0.5173 33 1 -0.3633 -0.8920 -0.5105 34 1 5.1243 -1.8144 -1.0355 35 1 5.6537 -1.0897 0.5016 36 1 4.6101 -2.5316 0.5104 37 1 2.5907 -3.1884 -0.5052 38 1 0.8985 -2.6365 -0.4974 39 1 0.8475 -1.1945 2.1384 40 1 -0.3421 -2.4087 1.6101 41 1 0.4891 -2.5976 3.1729 42 1 1.2776 -4.6772 3.4707 43 1 -0.0992 -6.7347 2.1116 44 1 1.6322 -7.1459 2.1452 45 1 -1.3153 -6.7642 3.9577 46 1 -1.0560 -6.6378 6.5838 47 1 -1.5978 -8.2259 5.9867 48 1 -2.6026 -8.9255 8.5620 49 1 1.6867 -6.4471 6.6641 50 1 2.5154 -8.0212 6.7952 51 1 2.2225 -8.4874 4.4626 52 1 2.7559 -6.7945 4.5391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508231023.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:49 Heat of formation + Delta-G solvation = 52.498548 kcal Electronic energy + Delta-G solvation = -30180.155307 eV Core-core repulsion = 26181.303697 eV Total energy + Delta-G solvation = -3998.851610 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.73332 -39.83802 -37.81678 -35.41334 -34.87656 -33.67655 -32.91775 -31.57826 -30.76417 -29.72971 -28.92039 -27.65821 -26.90089 -26.11650 -24.46906 -23.03675 -22.64911 -21.08939 -20.47440 -20.08888 -19.29092 -17.80169 -17.64357 -17.11091 -16.03175 -15.79609 -15.45845 -15.36421 -15.05051 -14.49546 -14.23517 -14.01828 -13.86537 -13.83488 -13.63572 -13.52802 -13.29822 -13.14813 -12.92759 -12.79522 -12.56060 -12.51671 -12.24361 -12.14931 -12.08864 -11.98407 -11.58803 -11.41739 -11.34858 -11.15405 -10.92009 -10.74898 -10.68672 -10.41935 -10.34261 -9.85572 -9.77260 -9.59293 -9.52276 -8.92016 -8.70352 -8.61403 -8.06714 -6.77314 -5.82130 -3.21091 1.54998 2.38656 2.55258 2.62833 2.71352 3.37533 3.43317 3.44639 3.59178 4.30657 4.39529 4.47450 4.65427 4.68485 4.73738 4.87025 5.02777 5.08073 5.12242 5.21076 5.28418 5.33832 5.35103 5.36496 5.39174 5.45418 5.56510 5.64508 5.65453 5.68717 5.80508 5.82736 5.91047 5.94892 6.02292 6.06292 6.11618 6.14929 6.30596 6.42479 6.46358 6.55971 6.70994 6.84226 6.98810 7.14789 7.23793 7.30869 7.41909 7.63220 7.70715 7.80283 8.30468 8.35643 9.17015 9.79715 10.37565 11.28275 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023496 B = 0.001857 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.422673 B =15076.170399 C =15359.822300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.087 3.913 3 N -0.298 5.298 4 N -0.478 5.478 5 H 0.436 0.564 6 C 0.090 3.910 7 C -0.096 4.096 8 C -0.229 4.229 9 C -0.020 4.020 10 C -0.103 4.103 11 H 0.093 0.907 12 C -0.146 4.146 13 C 0.513 3.487 14 O -0.548 6.548 15 N -0.720 5.720 16 C 0.157 3.843 17 C -0.166 4.166 18 C -0.125 4.125 19 C 0.194 3.806 20 N -0.595 5.595 21 C -0.247 4.247 22 H 0.068 0.932 23 C -0.001 4.001 24 N -0.910 5.910 25 Si 0.905 3.095 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.144 3.856 30 C -0.090 4.090 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.401 0.599 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.041 0.959 47 H 0.093 0.907 48 H 0.255 0.745 49 H 0.023 0.977 50 H 0.056 0.944 51 H 0.064 0.936 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.826 17.679 -15.994 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.079 4.079 3 N -0.122 5.122 4 N -0.187 5.187 5 H 0.280 0.720 6 C -0.038 4.038 7 C -0.154 4.154 8 C -0.240 4.240 9 C -0.059 4.059 10 C -0.125 4.125 11 H 0.111 0.889 12 C -0.203 4.203 13 C 0.299 3.701 14 O -0.425 6.425 15 N -0.371 5.371 16 C 0.034 3.966 17 C -0.167 4.167 18 C -0.145 4.145 19 C 0.069 3.931 20 N -0.318 5.318 21 C -0.376 4.376 22 H 0.086 0.914 23 C -0.199 4.199 24 N -0.555 5.555 25 Si 0.735 3.265 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.017 3.983 30 C -0.129 4.129 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.235 0.765 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.059 0.941 47 H 0.111 0.889 48 H 0.065 0.935 49 H 0.041 0.959 50 H 0.075 0.925 51 H 0.082 0.918 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.592 18.450 -16.639 26.632 hybrid contribution 0.296 -1.151 0.756 1.409 sum 9.888 17.299 -15.883 25.481 Atomic orbital electron populations 1.20336 0.86766 1.03402 1.03293 1.22227 0.96916 0.90158 0.98647 1.77297 0.86471 1.22372 1.26042 1.46143 1.07304 1.04831 1.60382 0.71994 1.20914 0.97028 0.84884 1.01011 1.20501 0.92765 0.98552 1.03610 1.19687 0.91041 0.96271 1.16990 1.19650 1.02422 0.89528 0.94251 1.21303 1.00955 0.91373 0.98863 0.88927 1.21900 0.97678 1.00532 1.00201 1.20695 0.76583 0.89134 0.83683 1.90685 1.51371 1.68791 1.31685 1.46230 1.71028 1.11287 1.08549 1.20440 1.00532 0.80171 0.95416 1.20502 0.96262 1.05527 0.94419 1.23280 0.95814 0.95788 0.99658 1.19758 0.90842 0.97109 0.85387 1.44121 1.00790 1.27705 1.59224 1.19137 0.98663 0.96810 1.23004 0.91412 1.24991 0.98374 0.98029 0.98517 1.69995 1.08193 1.31658 1.45646 0.86319 0.77064 0.84494 0.78598 1.20930 1.21625 1.21054 1.20988 0.89701 0.95779 0.91799 1.20782 0.93947 1.00021 0.98114 0.90103 0.91022 0.90143 0.90007 0.91043 0.89330 0.90600 0.90471 0.91225 0.91904 0.92192 0.76472 0.91761 0.91728 0.88788 0.94125 0.88902 0.93532 0.95900 0.92501 0.91756 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 9.25 36.01 0.33 -0.26 16 2 C 0.09 0.85 6.27 -82.40 -0.52 0.33 16 3 N -0.30 -3.19 12.70 33.67 0.43 -2.76 16 4 N -0.48 -3.88 7.36 33.47 0.25 -3.63 16 5 H 0.44 2.21 8.96 -182.60 -1.64 0.57 16 6 C 0.09 0.72 7.21 -82.27 -0.59 0.12 16 7 C -0.10 -0.49 10.04 36.00 0.36 -0.13 16 8 C -0.23 -2.10 4.77 -105.06 -0.50 -2.60 16 9 C -0.02 -0.18 3.94 -27.88 -0.11 -0.29 16 10 C -0.10 -0.95 2.71 -91.77 -0.25 -1.20 16 11 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 12 C -0.15 -1.21 7.88 37.16 0.29 -0.92 16 13 C 0.51 6.38 7.15 -10.99 -0.08 6.30 16 14 O -0.55 -8.76 15.92 5.55 0.09 -8.67 16 15 N -0.72 -8.84 5.44 -61.47 -0.33 -9.17 16 16 C 0.16 2.28 5.66 -5.19 -0.03 2.25 16 17 C -0.17 -2.76 5.22 -100.99 -0.53 -3.28 16 18 C -0.12 -2.30 9.47 -35.78 -0.34 -2.64 16 19 C 0.19 4.48 5.23 -5.10 -0.03 4.45 16 20 N -0.60 -14.55 3.01 -173.56 -0.52 -15.07 16 21 C -0.25 -6.65 9.71 -15.06 -0.15 -6.80 16 22 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 23 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 24 N -0.91 -25.83 11.08 55.49 0.61 -25.21 16 25 Si 0.91 21.49 29.58 -169.99 -5.03 16.46 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.14 2.88 6.59 -3.44 -0.02 2.86 16 30 C -0.09 -1.50 5.95 -28.09 -0.17 -1.67 16 31 H 0.08 0.54 6.94 -51.93 -0.36 0.18 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.54 7.25 -51.92 -0.38 0.17 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.47 7.77 -51.93 -0.40 0.07 16 37 H 0.08 0.75 7.59 -51.93 -0.39 0.35 16 38 H 0.08 0.77 7.25 -51.93 -0.38 0.39 16 39 H 0.07 0.57 5.38 -51.93 -0.28 0.29 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.48 7.57 -51.93 -0.39 0.09 16 42 H 0.40 4.35 7.89 -40.82 -0.32 4.03 16 43 H 0.06 0.98 7.78 -51.93 -0.40 0.57 16 44 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 45 H 0.09 1.57 7.73 -52.49 -0.41 1.16 16 46 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.09 2.41 6.41 -51.93 -0.33 2.07 16 48 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 51 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 52 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 412.52 15.07 6.22 6.22 Total: -1.00 -32.80 412.52 -10.57 -43.37 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -9.87 Total: 2.08 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.41 Total: -3.61 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.43 Total: -55.84 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.80 -10.57 -43.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508231023.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.870 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds