Wall clock time and date at job start Wed Apr 1 2020 03:49:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30839 * 125.89464 * 2 1
4 4 N 1.40094 * 108.20063 * 180.25397 * 3 2 1
5 5 H 0.97000 * 126.03596 * 179.68741 * 4 3 2
6 6 C 1.34945 * 107.92438 * 359.71765 * 4 3 2
7 7 C 1.50697 * 126.12475 * 180.02562 * 6 4 3
8 8 C 1.35312 * 107.74760 * 359.97438 * 6 4 3
9 9 C 1.50700 * 126.03979 * 180.02562 * 8 6 4
10 10 C 1.53002 * 109.47035 * 90.00103 * 9 8 6
11 11 H 1.09001 * 109.47338 * 305.00021 * 10 9 8
12 12 C 1.52996 * 109.47169 * 65.00275 * 10 9 8
13 13 C 1.50703 * 109.47201 * 185.00056 * 10 9 8
14 14 O 1.21284 * 119.99833 * 359.97438 * 13 10 9
15 15 N 1.34774 * 120.00222 * 179.97438 * 13 10 9
16 16 C 1.46504 * 119.99933 * 179.97438 * 15 13 10
17 17 C 1.50708 * 109.46657 * 179.72470 * 16 15 13
18 18 C 1.29456 * 117.69229 * 95.00386 * 17 16 15
19 19 C 1.50321 * 123.64939 * 180.85447 * 18 17 16
20 20 N 1.47009 * 109.16464 * 349.02398 * 19 18 17
21 21 C 1.36942 * 121.37252 * 222.96882 * 20 19 18
22 22 H 1.07997 * 119.99985 * 155.96612 * 21 20 19
23 23 C 1.38811 * 119.99754 * 335.96581 * 21 20 19
24 24 N 1.31620 * 120.00317 * 344.52153 * 23 21 20
25 25 Si 1.86803 * 119.99738 * 164.52377 * 23 21 20
26 26 H 1.48498 * 109.47067 * 60.00113 * 25 23 21
27 27 H 1.48502 * 109.46888 * 179.97438 * 25 23 21
28 28 H 1.48496 * 109.47509 * 299.99743 * 25 23 21
29 29 C 1.47331 * 117.25507 * 42.94476 * 20 19 18
30 30 C 1.49961 * 117.69271 * 274.73706 * 17 16 15
31 31 H 1.08995 * 109.47378 * 270.21519 * 1 2 3
32 32 H 1.08998 * 109.47058 * 30.22211 * 1 2 3
33 33 H 1.09007 * 109.46622 * 150.22004 * 1 2 3
34 34 H 1.08999 * 109.47069 * 269.97018 * 7 6 4
35 35 H 1.08994 * 109.47516 * 29.97102 * 7 6 4
36 36 H 1.09005 * 109.47213 * 149.97238 * 7 6 4
37 37 H 1.09004 * 109.47412 * 330.00098 * 9 8 6
38 38 H 1.08999 * 109.47421 * 209.99672 * 9 8 6
39 39 H 1.09001 * 109.47202 * 299.99557 * 12 10 9
40 40 H 1.08998 * 109.47470 * 60.00103 * 12 10 9
41 41 H 1.09001 * 109.47292 * 180.02562 * 12 10 9
42 42 H 0.97005 * 119.99991 * 359.72758 * 15 13 10
43 43 H 1.08995 * 109.47252 * 299.72022 * 16 15 13
44 44 H 1.08991 * 109.46988 * 59.72647 * 16 15 13
45 45 H 1.07998 * 118.17736 * 0.87426 * 18 17 16
46 46 H 1.08997 * 109.51993 * 108.92352 * 19 18 17
47 47 H 1.09000 * 109.52505 * 229.11574 * 19 18 17
48 48 H 0.97000 * 119.99918 * 179.97438 * 24 23 21
49 49 H 1.09005 * 109.77962 * 57.80856 * 29 20 19
50 50 H 1.08998 * 109.78397 * 178.61808 * 29 20 19
51 51 H 1.09000 * 109.31663 * 281.29220 * 30 17 16
52 52 H 1.09001 * 109.31724 * 40.72456 * 30 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2741 1.0599 0.0000
4 7 3.6088 0.6341 -0.0059
5 1 4.3908 1.2080 -0.0115
6 6 3.6142 -0.7153 -0.0031
7 6 4.8350 -1.5988 -0.0069
8 6 2.3272 -1.1329 0.0049
9 6 1.8600 -2.5657 0.0110
10 6 1.7097 -3.0469 1.4556
11 1 2.6476 -2.8933 1.9893
12 6 0.5959 -2.2551 2.1436
13 6 1.3618 -4.5132 1.4630
14 8 1.2451 -5.1140 0.4160
15 7 1.1803 -5.1569 2.6332
16 6 0.8416 -6.5822 2.6403
17 6 0.7009 -7.0579 4.0634
18 6 -0.4873 -7.0759 4.5770
19 6 -0.7786 -7.5069 5.9873
20 7 0.4231 -8.1316 6.5590
21 6 0.3449 -9.2786 7.3032
22 1 1.2038 -9.9279 7.3864
23 6 -0.8385 -9.6065 7.9506
24 7 -1.7756 -8.6961 8.1100
25 14 -1.1008 -11.3399 8.5955
26 1 -0.0464 -11.6629 9.5900
27 1 -2.4347 -11.4309 9.2418
28 1 -1.0298 -12.3037 7.4680
29 6 1.7150 -7.4734 6.2979
30 6 1.9464 -7.4827 4.7826
31 1 -0.3634 0.0039 1.0276
32 1 -0.3633 0.8880 -0.5173
33 1 -0.3633 -0.8920 -0.5105
34 1 5.1243 -1.8144 -1.0355
35 1 5.6537 -1.0897 0.5016
36 1 4.6101 -2.5316 0.5104
37 1 2.5907 -3.1884 -0.5052
38 1 0.8985 -2.6365 -0.4974
39 1 0.8475 -1.1945 2.1384
40 1 -0.3421 -2.4087 1.6101
41 1 0.4891 -2.5976 3.1729
42 1 1.2776 -4.6772 3.4707
43 1 -0.0992 -6.7347 2.1116
44 1 1.6322 -7.1459 2.1452
45 1 -1.3153 -6.7642 3.9577
46 1 -1.0560 -6.6378 6.5838
47 1 -1.5978 -8.2259 5.9867
48 1 -2.6026 -8.9255 8.5620
49 1 1.6867 -6.4471 6.6641
50 1 2.5154 -8.0212 6.7952
51 1 2.2225 -8.4874 4.4626
52 1 2.7559 -6.7945 4.5391
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001508231023.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:49:48
Heat of formation + Delta-G solvation = 32.160957 kcal
Electronic energy + Delta-G solvation = -30181.037211 eV
Core-core repulsion = 26181.303697 eV
Total energy + Delta-G solvation = -3999.733514 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-42.37885 -40.87401 -39.34053 -36.48997 -36.02467 -34.49692 -34.26088 -32.73325
-31.98395 -31.37221 -29.53460 -28.60699 -28.08648 -26.78376 -26.02206 -24.45061
-23.86626 -22.69663 -21.21427 -20.91430 -19.98863 -19.46845 -18.49680 -18.05605
-17.28728 -17.08714 -16.90005 -16.40129 -16.13651 -15.71703 -15.48159 -15.19566
-15.10181 -14.94533 -14.60130 -14.43225 -14.27581 -14.06715 -13.89867 -13.70539
-13.55436 -13.38905 -13.25654 -13.14940 -13.09894 -12.87049 -12.83084 -12.75383
-12.65149 -12.57202 -12.24767 -12.12099 -12.04656 -11.87328 -11.69389 -11.36468
-11.24748 -10.77214 -10.65775 -10.16735 -10.00851 -9.62058 -9.26218 -8.73577
-7.87331 -5.28438 0.92619 1.22426 1.47769 1.50373 1.56652 1.73175
1.73703 2.01145 2.52062 2.54033 3.29671 3.64852 3.71327 3.77660
3.86821 3.93259 4.00109 4.03423 4.13342 4.26566 4.44984 4.48138
4.51270 4.56124 4.60968 4.69565 4.73565 4.75955 4.78901 4.79998
4.86422 4.94320 4.98286 5.01033 5.04742 5.12582 5.14268 5.21008
5.23556 5.24584 5.34778 5.40281 5.43328 5.50161 5.50511 5.62489
5.78835 5.79987 6.19771 6.35088 6.47749 6.64818 6.78082 7.14747
7.32458 7.85092 8.38505 9.20931
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.023496 B = 0.001857 C = 0.001823
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1191.422673 B =15076.170399 C =15359.822300
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 C 0.078 3.922
3 N -0.333 5.333
4 N -0.474 5.474
5 H 0.448 0.552
6 C 0.097 3.903
7 C -0.095 4.095
8 C -0.246 4.246
9 C -0.011 4.011
10 C -0.092 4.092
11 H 0.111 0.889
12 C -0.142 4.142
13 C 0.516 3.484
14 O -0.583 6.583
15 N -0.713 5.713
16 C 0.167 3.833
17 C -0.138 4.138
18 C -0.144 4.144
19 C 0.205 3.795
20 N -0.616 5.616
21 C -0.257 4.257
22 H 0.070 0.930
23 C -0.055 4.055
24 N -0.939 5.939
25 Si 0.967 3.033
26 H -0.275 1.275
27 H -0.295 1.295
28 H -0.281 1.281
29 C 0.138 3.862
30 C -0.083 4.083
31 H 0.088 0.912
32 H 0.073 0.927
33 H 0.084 0.916
34 H 0.091 0.909
35 H 0.091 0.909
36 H 0.089 0.911
37 H 0.070 0.930
38 H 0.066 0.934
39 H 0.073 0.927
40 H 0.059 0.941
41 H 0.064 0.936
42 H 0.411 0.589
43 H 0.059 0.941
44 H 0.068 0.932
45 H 0.112 0.888
46 H 0.014 0.986
47 H 0.055 0.945
48 H 0.250 0.750
49 H 0.029 0.971
50 H 0.058 0.942
51 H 0.062 0.938
52 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.864 18.128 -16.863 27.454
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.088 4.088
3 N -0.157 5.157
4 N -0.183 5.183
5 H 0.294 0.706
6 C -0.032 4.032
7 C -0.153 4.153
8 C -0.258 4.258
9 C -0.050 4.050
10 C -0.114 4.114
11 H 0.128 0.872
12 C -0.200 4.200
13 C 0.304 3.696
14 O -0.463 6.463
15 N -0.364 5.364
16 C 0.044 3.956
17 C -0.139 4.139
18 C -0.164 4.164
19 C 0.080 3.920
20 N -0.340 5.340
21 C -0.387 4.387
22 H 0.088 0.912
23 C -0.250 4.250
24 N -0.586 5.586
25 Si 0.796 3.204
26 H -0.201 1.201
27 H -0.221 1.221
28 H -0.207 1.207
29 C 0.013 3.987
30 C -0.122 4.122
31 H 0.107 0.893
32 H 0.092 0.908
33 H 0.103 0.897
34 H 0.109 0.891
35 H 0.109 0.891
36 H 0.108 0.892
37 H 0.088 0.912
38 H 0.085 0.915
39 H 0.092 0.908
40 H 0.079 0.921
41 H 0.083 0.917
42 H 0.247 0.753
43 H 0.077 0.923
44 H 0.086 0.914
45 H 0.129 0.871
46 H 0.032 0.968
47 H 0.074 0.926
48 H 0.059 0.941
49 H 0.047 0.953
50 H 0.077 0.923
51 H 0.081 0.919
52 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 11.669 18.934 -17.507 28.305
hybrid contribution -0.220 -1.244 0.994 1.608
sum 11.449 17.690 -16.513 26.771
Atomic orbital electron populations
1.20397 0.85822 1.03720 1.03881 1.22552 0.97780 0.90215 0.98225
1.77241 0.87643 1.23301 1.27564 1.46183 1.07095 1.05229 1.59827
0.70621 1.21347 0.97683 0.85009 0.99191 1.20611 0.92080 0.98126
1.04520 1.19713 0.91625 0.95890 1.18534 1.19516 1.01718 0.89665
0.94094 1.21271 1.01978 0.88916 0.99213 0.87152 1.21879 0.97213
1.00586 1.00287 1.21190 0.75446 0.90126 0.82851 1.90678 1.52935
1.69784 1.32927 1.46089 1.70784 1.10342 1.09216 1.20198 1.00539
0.81518 0.93362 1.20624 0.95398 1.02722 0.95107 1.22934 0.97430
0.98427 0.97626 1.19395 0.89690 0.95044 0.87855 1.44410 1.02606
1.27693 1.59267 1.19473 0.98711 0.97849 1.22651 0.91223 1.25737
0.98406 1.01351 0.99484 1.70157 1.08391 1.33233 1.46772 0.85338
0.76667 0.80389 0.78052 1.20068 1.22114 1.20679 1.21186 0.87741
0.95593 0.94164 1.20720 0.95052 1.00995 0.95444 0.89323 0.90847
0.89677 0.89071 0.89069 0.89229 0.91166 0.91512 0.90832 0.92143
0.91664 0.75309 0.92285 0.91414 0.87055 0.96830 0.92642 0.94138
0.95325 0.92325 0.91912 0.89266
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.13 9.25 71.24 0.66 -0.47 16
2 C 0.08 1.45 6.27 43.10 0.27 1.72 16
3 N -0.33 -6.81 12.70 -47.38 -0.60 -7.41 16
4 N -0.47 -6.93 7.36 -48.01 -0.35 -7.29 16
5 H 0.45 3.78 8.96 -213.32 -1.91 1.87 16
6 C 0.10 1.35 7.21 41.40 0.30 1.65 16
7 C -0.10 -0.71 10.04 71.23 0.71 0.01 16
8 C -0.25 -4.14 4.77 -20.15 -0.10 -4.24 16
9 C -0.01 -0.19 3.94 29.85 0.12 -0.07 16
10 C -0.09 -1.49 2.71 -11.54 -0.03 -1.52 16
11 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16
12 C -0.14 -2.07 7.88 71.98 0.57 -1.50 16
13 C 0.52 11.67 7.15 87.66 0.63 12.30 16
14 O -0.58 -17.74 15.92 -3.04 -0.05 -17.78 16
15 N -0.71 -15.52 5.44 -466.78 -2.54 -18.06 16
16 C 0.17 4.43 5.66 85.63 0.48 4.91 16
17 C -0.14 -4.28 5.22 -15.14 -0.08 -4.36 16
18 C -0.14 -5.22 9.47 27.10 0.26 -4.97 16
19 C 0.21 9.74 5.23 85.42 0.45 10.18 16
20 N -0.62 -30.28 3.01 -703.03 -2.11 -32.40 16
21 C -0.26 -13.96 9.71 84.03 0.82 -13.15 16
22 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16
23 C -0.05 -3.05 5.01 84.86 0.43 -2.62 16
24 N -0.94 -54.95 11.08 21.65 0.24 -54.72 16
25 Si 0.97 44.72 29.58 68.60 2.03 46.75 16
26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16
28 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16
29 C 0.14 5.35 6.59 86.32 0.57 5.92 16
30 C -0.08 -2.58 5.95 29.72 0.18 -2.40 16
31 H 0.09 1.08 6.94 -2.39 -0.02 1.07 16
32 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16
33 H 0.08 1.09 7.25 -2.38 -0.02 1.07 16
34 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16
35 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16
36 H 0.09 0.69 7.77 -2.38 -0.02 0.67 16
37 H 0.07 1.28 7.59 -2.39 -0.02 1.27 16
38 H 0.07 1.28 7.25 -2.39 -0.02 1.26 16
39 H 0.07 1.05 5.38 -2.39 -0.01 1.04 16
40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
41 H 0.06 0.89 7.57 -2.39 -0.02 0.87 16
42 H 0.41 7.57 7.89 -92.70 -0.73 6.84 16
43 H 0.06 1.67 7.78 -2.39 -0.02 1.66 16
44 H 0.07 1.82 8.11 -2.39 -0.02 1.80 16
45 H 0.11 3.63 7.73 -2.91 -0.02 3.61 16
46 H 0.01 0.71 8.14 -2.39 -0.02 0.70 16
47 H 0.06 3.01 6.41 -2.39 -0.02 2.99 16
48 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16
49 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16
50 H 0.06 2.21 7.96 -2.39 -0.02 2.19 16
51 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
52 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16
Total: -1.00 -71.87 412.52 1.13 -70.74
By element:
Atomic # 1 Polarization: 20.49 SS G_CDS: -1.71 Total: 18.78 kcal
Atomic # 6 Polarization: -4.83 SS G_CDS: 6.22 Total: 1.39 kcal
Atomic # 7 Polarization: -114.51 SS G_CDS: -5.37 Total: -119.87 kcal
Atomic # 8 Polarization: -17.74 SS G_CDS: -0.05 Total: -17.78 kcal
Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal
Total: -71.87 1.13 -70.74 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001508231023.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.904 kcal
(2) G-P(sol) polarization free energy of solvation -71.874 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.030 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.743 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.161 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds