Wall clock time and date at job start Wed Apr 1 2020 03:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30839 * 125.89501 * 2 1 4 4 N 1.40086 * 108.20362 * 180.25682 * 3 2 1 5 5 H 0.96997 * 126.04013 * 179.69708 * 4 3 2 6 6 C 1.34949 * 107.92377 * 359.71203 * 4 3 2 7 7 C 1.50706 * 126.12635 * 180.02562 * 6 4 3 8 8 C 1.35313 * 107.74754 * 0.02562 * 6 4 3 9 9 C 1.50705 * 126.04271 * 180.02562 * 8 6 4 10 10 C 1.53003 * 109.47185 * 89.99794 * 9 8 6 11 11 H 1.09004 * 109.46798 * 55.00275 * 10 9 8 12 12 C 1.53004 * 109.47007 * 295.00161 * 10 9 8 13 13 C 1.50690 * 109.47120 * 175.00213 * 10 9 8 14 14 O 1.21281 * 120.00038 * 359.97438 * 13 10 9 15 15 N 1.34774 * 120.00062 * 180.02562 * 13 10 9 16 16 C 1.46502 * 120.00398 * 179.97438 * 15 13 10 17 17 C 1.50695 * 109.47354 * 179.97438 * 16 15 13 18 18 C 1.29452 * 117.69233 * 95.00569 * 17 16 15 19 19 C 1.50327 * 123.65264 * 180.57855 * 18 17 16 20 20 N 1.47000 * 109.16339 * 349.27440 * 19 18 17 21 21 C 1.36939 * 121.37519 * 222.96589 * 20 19 18 22 22 H 1.08005 * 119.99838 * 155.97782 * 21 20 19 23 23 C 1.38810 * 120.00205 * 335.97906 * 21 20 19 24 24 N 1.31617 * 119.99875 * 344.51418 * 23 21 20 25 25 Si 1.86807 * 119.99988 * 164.50951 * 23 21 20 26 26 H 1.48498 * 109.46949 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46820 * 120.00005 * 25 23 21 28 28 H 1.48497 * 109.46961 * 240.00068 * 25 23 21 29 29 C 1.47340 * 117.24944 * 42.95351 * 20 19 18 30 30 C 1.49965 * 117.69465 * 275.22318 * 17 16 15 31 31 H 1.09000 * 109.47249 * 270.21755 * 1 2 3 32 32 H 1.09002 * 109.47118 * 30.22098 * 1 2 3 33 33 H 1.09002 * 109.46966 * 150.21688 * 1 2 3 34 34 H 1.08995 * 109.47170 * 269.97202 * 7 6 4 35 35 H 1.08995 * 109.47026 * 29.97885 * 7 6 4 36 36 H 1.09002 * 109.47137 * 149.97703 * 7 6 4 37 37 H 1.09001 * 109.47167 * 330.00110 * 9 8 6 38 38 H 1.08999 * 109.47401 * 209.99683 * 9 8 6 39 39 H 1.09001 * 109.46761 * 179.97438 * 12 10 9 40 40 H 1.08999 * 109.47105 * 300.00049 * 12 10 9 41 41 H 1.09004 * 109.46834 * 59.99913 * 12 10 9 42 42 H 0.97001 * 119.99988 * 359.97438 * 15 13 10 43 43 H 1.09004 * 109.46857 * 60.00134 * 16 15 13 44 44 H 1.08997 * 109.47563 * 300.00252 * 16 15 13 45 45 H 1.08007 * 118.17640 * 0.85757 * 18 17 16 46 46 H 1.08998 * 109.52186 * 109.18887 * 19 18 17 47 47 H 1.08999 * 109.51691 * 229.36942 * 19 18 17 48 48 H 0.97002 * 119.99820 * 180.02562 * 24 23 21 49 49 H 1.08996 * 109.78029 * 57.80236 * 29 20 19 50 50 H 1.09002 * 109.77908 * 178.61294 * 29 20 19 51 51 H 1.08998 * 109.43384 * 40.82027 * 30 17 16 52 52 H 1.09000 * 109.13218 * 281.42810 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0060 5 1 4.3908 1.2080 -0.0114 6 6 3.6142 -0.7152 -0.0031 7 6 4.8351 -1.5988 -0.0069 8 6 2.3272 -1.1329 0.0039 9 6 1.8600 -2.5657 0.0097 10 6 1.7085 -3.0469 1.4542 11 1 1.0453 -2.3713 1.9945 12 6 3.0801 -3.0656 2.1320 13 6 1.1252 -4.4363 1.4623 14 8 0.8566 -4.9873 0.4157 15 7 0.9010 -5.0663 2.6324 16 6 0.3334 -6.4169 2.6403 17 6 0.1844 -6.8908 4.0630 18 6 -0.9648 -6.7243 4.6353 19 6 -1.2574 -7.1348 6.0515 20 7 -0.1483 -7.9582 6.5543 21 6 -0.3774 -9.0941 7.2840 22 1 0.3679 -9.8752 7.3154 23 6 -1.5674 -9.2417 7.9832 24 7 -2.3361 -8.1960 8.2020 25 14 -2.0778 -10.9245 8.6136 26 1 -1.0476 -11.9265 8.2395 27 1 -2.2105 -10.8798 10.0919 28 1 -3.3806 -11.3045 8.0109 29 6 1.2201 -7.5110 6.2404 30 6 1.3792 -7.5175 4.7177 31 1 -0.3634 0.0039 1.0276 32 1 -0.3633 0.8880 -0.5173 33 1 -0.3633 -0.8919 -0.5105 34 1 5.1243 -1.8144 -1.0354 35 1 5.6537 -1.0896 0.5016 36 1 4.6102 -2.5315 0.5104 37 1 2.5911 -3.1884 -0.5058 38 1 0.8988 -2.6366 -0.4995 39 1 2.9721 -3.4080 3.1612 40 1 3.7432 -3.7412 1.5916 41 1 3.5020 -2.0606 2.1261 42 1 1.1155 -4.6255 3.4694 43 1 0.9965 -7.0928 2.1002 44 1 -0.6435 -6.4033 2.1573 45 1 -1.7589 -6.2692 4.0619 46 1 -1.3627 -6.2462 6.6739 47 1 -2.1816 -7.7120 6.0798 48 1 -3.1675 -8.2991 8.6909 49 1 1.3754 -6.5023 6.6231 50 1 1.9429 -8.1920 6.6897 51 1 2.2755 -6.9599 4.4464 52 1 1.4787 -8.5458 4.3701 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508231025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:53 Heat of formation + Delta-G solvation = 54.454348 kcal Electronic energy + Delta-G solvation = -30183.555842 eV Core-core repulsion = 26184.789041 eV Total energy + Delta-G solvation = -3998.766800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.74252 -39.84659 -37.82510 -35.44377 -34.88462 -33.75477 -32.91577 -31.48337 -30.74463 -29.73770 -28.89710 -27.91045 -26.96809 -25.89234 -24.50537 -23.08665 -22.64633 -21.09826 -20.46145 -20.15959 -19.27646 -17.75218 -17.56402 -17.17472 -16.09563 -15.71986 -15.58031 -15.40645 -15.02310 -14.61387 -14.22800 -13.99959 -13.87905 -13.76329 -13.66016 -13.45288 -13.30666 -13.21275 -12.88537 -12.71946 -12.68695 -12.53481 -12.25953 -12.24632 -12.09501 -11.97176 -11.57973 -11.39138 -11.36206 -11.11573 -10.93698 -10.77058 -10.68657 -10.41453 -10.30567 -9.85539 -9.78141 -9.59663 -9.51229 -8.92323 -8.71355 -8.61145 -8.06986 -6.77602 -5.82600 -3.21439 1.55027 2.39042 2.55395 2.62739 2.70936 3.36062 3.43946 3.45887 3.58731 4.30848 4.39647 4.47054 4.61221 4.68415 4.77936 4.79152 5.02473 5.04461 5.13090 5.20362 5.31068 5.31808 5.34079 5.37779 5.38392 5.44848 5.55115 5.57169 5.60943 5.70167 5.80478 5.82299 5.85595 5.95311 6.00593 6.05302 6.09436 6.14903 6.31027 6.42839 6.46221 6.55647 6.70805 6.83826 6.98984 7.14732 7.23685 7.30655 7.42293 7.62818 7.71055 7.80301 8.30071 8.35165 9.16692 9.79384 10.37171 11.27875 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023178 B = 0.001857 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.730153 B =15077.314013 C =15342.608337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.085 3.915 3 N -0.298 5.298 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.092 3.908 7 C -0.107 4.107 8 C -0.229 4.229 9 C -0.019 4.019 10 C -0.105 4.105 11 H 0.096 0.904 12 C -0.147 4.147 13 C 0.513 3.487 14 O -0.547 6.547 15 N -0.720 5.720 16 C 0.157 3.843 17 C -0.166 4.166 18 C -0.125 4.125 19 C 0.194 3.806 20 N -0.595 5.595 21 C -0.245 4.245 22 H 0.069 0.931 23 C -0.002 4.002 24 N -0.909 5.909 25 Si 0.904 3.096 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.289 1.289 29 C 0.144 3.856 30 C -0.090 4.090 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.401 0.599 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.041 0.959 47 H 0.093 0.907 48 H 0.254 0.746 49 H 0.022 0.978 50 H 0.057 0.943 51 H 0.053 0.947 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.453 16.192 -16.150 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 N -0.122 5.122 4 N -0.187 5.187 5 H 0.280 0.720 6 C -0.036 4.036 7 C -0.165 4.165 8 C -0.240 4.240 9 C -0.058 4.058 10 C -0.126 4.126 11 H 0.114 0.886 12 C -0.204 4.204 13 C 0.300 3.700 14 O -0.425 6.425 15 N -0.371 5.371 16 C 0.034 3.966 17 C -0.167 4.167 18 C -0.146 4.146 19 C 0.069 3.931 20 N -0.319 5.319 21 C -0.375 4.375 22 H 0.087 0.913 23 C -0.200 4.200 24 N -0.555 5.555 25 Si 0.734 3.266 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.216 1.216 29 C 0.017 3.983 30 C -0.129 4.129 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.235 0.765 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.059 0.941 47 H 0.111 0.889 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.075 0.925 51 H 0.071 0.929 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.123 17.016 -16.798 26.808 hybrid contribution 0.138 -1.056 0.758 1.307 sum 12.261 15.959 -16.040 25.736 Atomic orbital electron populations 1.20235 0.86692 1.03474 1.03238 1.22265 0.96987 0.90211 0.98662 1.77298 0.86455 1.22351 1.26054 1.46149 1.07308 1.04852 1.60369 0.72012 1.20883 0.96977 0.84822 1.00931 1.20758 0.92812 0.99152 1.03767 1.19685 0.91073 0.96221 1.17049 1.19645 1.02443 0.89532 0.94218 1.21300 0.98519 0.93831 0.98988 0.88575 1.21962 0.95387 1.02648 1.00429 1.20665 0.77946 0.87753 0.83684 1.90685 1.52268 1.67804 1.31722 1.46229 1.64630 1.17675 1.08568 1.20440 0.98399 0.82264 0.95457 1.20494 0.97125 1.04697 0.94358 1.23282 0.95772 0.96043 0.99475 1.19759 0.92944 0.94649 0.85761 1.44133 0.99184 1.27448 1.61088 1.19223 1.02848 0.93388 1.21994 0.91310 1.24995 0.99403 0.97310 0.98269 1.70015 1.14327 1.27434 1.43694 0.86181 0.78363 0.83877 0.78129 1.20298 1.21760 1.21566 1.20949 0.88474 0.97280 0.91560 1.20747 0.94237 0.99452 0.98430 0.90315 0.90920 0.90116 0.90115 0.91063 0.88532 0.90800 0.90246 0.92012 0.91937 0.91288 0.76479 0.91711 0.91748 0.88786 0.94138 0.88886 0.93640 0.95964 0.92471 0.92884 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.26 36.01 0.37 -0.24 16 2 C 0.09 0.86 7.22 -82.40 -0.59 0.27 16 3 N -0.30 -3.23 12.70 33.67 0.43 -2.81 16 4 N -0.48 -3.88 7.36 33.48 0.25 -3.63 16 5 H 0.44 2.20 8.96 -182.61 -1.64 0.56 16 6 C 0.09 0.72 6.26 -82.26 -0.52 0.21 16 7 C -0.11 -0.52 9.47 36.01 0.34 -0.18 16 8 C -0.23 -2.11 4.82 -105.05 -0.51 -2.62 16 9 C -0.02 -0.18 4.00 -27.88 -0.11 -0.29 16 10 C -0.10 -0.96 2.71 -91.77 -0.25 -1.21 16 11 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 12 C -0.15 -1.10 7.49 37.16 0.28 -0.82 16 13 C 0.51 6.37 7.15 -10.99 -0.08 6.29 16 14 O -0.55 -8.74 15.92 5.56 0.09 -8.65 16 15 N -0.72 -8.80 5.44 -61.48 -0.33 -9.14 16 16 C 0.16 2.27 5.66 -5.20 -0.03 2.24 16 17 C -0.17 -2.75 5.23 -100.99 -0.53 -3.27 16 18 C -0.13 -2.31 9.47 -35.78 -0.34 -2.65 16 19 C 0.19 4.48 5.23 -5.10 -0.03 4.45 16 20 N -0.60 -14.53 3.01 -173.68 -0.52 -15.06 16 21 C -0.25 -6.61 9.71 -15.06 -0.15 -6.75 16 22 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 23 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 24 N -0.91 -25.83 11.08 55.49 0.61 -25.22 16 25 Si 0.90 21.49 29.58 -169.99 -5.03 16.46 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 C 0.14 2.87 6.58 -3.53 -0.02 2.85 16 30 C -0.09 -1.50 5.94 -28.19 -0.17 -1.67 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.58 7.25 -51.93 -0.38 0.20 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.10 0.49 4.54 -51.93 -0.24 0.25 16 37 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 38 H 0.08 0.82 7.06 -51.93 -0.37 0.45 16 39 H 0.06 0.45 7.57 -51.93 -0.39 0.05 16 40 H 0.06 0.45 6.97 -51.93 -0.36 0.09 16 41 H 0.07 0.48 5.80 -51.93 -0.30 0.18 16 42 H 0.40 4.32 7.88 -40.82 -0.32 4.00 16 43 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 44 H 0.06 0.98 7.78 -51.93 -0.40 0.57 16 45 H 0.09 1.57 7.73 -52.48 -0.41 1.16 16 46 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.09 2.41 6.41 -51.93 -0.33 2.08 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 51 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 409.87 15.07 6.18 6.18 Total: -1.00 -32.88 409.87 -10.47 -43.36 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -9.73 Total: 2.06 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -2.41 Total: -3.55 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.43 Total: -55.85 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.88 -10.47 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508231025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.812 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds