Wall clock time and date at job start Wed Apr 1 2020 03:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30839 * 125.89501 * 2 1 4 4 N 1.40086 * 108.20362 * 180.25682 * 3 2 1 5 5 H 0.96997 * 126.04013 * 179.69708 * 4 3 2 6 6 C 1.34949 * 107.92377 * 359.71203 * 4 3 2 7 7 C 1.50706 * 126.12635 * 180.02562 * 6 4 3 8 8 C 1.35313 * 107.74754 * 0.02562 * 6 4 3 9 9 C 1.50705 * 126.04271 * 180.02562 * 8 6 4 10 10 C 1.53003 * 109.47185 * 89.99794 * 9 8 6 11 11 H 1.09004 * 109.46798 * 55.00275 * 10 9 8 12 12 C 1.53004 * 109.47007 * 295.00161 * 10 9 8 13 13 C 1.50690 * 109.47120 * 175.00213 * 10 9 8 14 14 O 1.21281 * 120.00038 * 359.97438 * 13 10 9 15 15 N 1.34774 * 120.00062 * 180.02562 * 13 10 9 16 16 C 1.46502 * 120.00398 * 179.97438 * 15 13 10 17 17 C 1.50695 * 109.47354 * 179.97438 * 16 15 13 18 18 C 1.29452 * 117.69233 * 95.00569 * 17 16 15 19 19 C 1.50327 * 123.65264 * 180.57855 * 18 17 16 20 20 N 1.47000 * 109.16339 * 349.27440 * 19 18 17 21 21 C 1.36939 * 121.37519 * 222.96589 * 20 19 18 22 22 H 1.08005 * 119.99838 * 155.97782 * 21 20 19 23 23 C 1.38810 * 120.00205 * 335.97906 * 21 20 19 24 24 N 1.31617 * 119.99875 * 344.51418 * 23 21 20 25 25 Si 1.86807 * 119.99988 * 164.50951 * 23 21 20 26 26 H 1.48498 * 109.46949 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46820 * 120.00005 * 25 23 21 28 28 H 1.48497 * 109.46961 * 240.00068 * 25 23 21 29 29 C 1.47340 * 117.24944 * 42.95351 * 20 19 18 30 30 C 1.49965 * 117.69465 * 275.22318 * 17 16 15 31 31 H 1.09000 * 109.47249 * 270.21755 * 1 2 3 32 32 H 1.09002 * 109.47118 * 30.22098 * 1 2 3 33 33 H 1.09002 * 109.46966 * 150.21688 * 1 2 3 34 34 H 1.08995 * 109.47170 * 269.97202 * 7 6 4 35 35 H 1.08995 * 109.47026 * 29.97885 * 7 6 4 36 36 H 1.09002 * 109.47137 * 149.97703 * 7 6 4 37 37 H 1.09001 * 109.47167 * 330.00110 * 9 8 6 38 38 H 1.08999 * 109.47401 * 209.99683 * 9 8 6 39 39 H 1.09001 * 109.46761 * 179.97438 * 12 10 9 40 40 H 1.08999 * 109.47105 * 300.00049 * 12 10 9 41 41 H 1.09004 * 109.46834 * 59.99913 * 12 10 9 42 42 H 0.97001 * 119.99988 * 359.97438 * 15 13 10 43 43 H 1.09004 * 109.46857 * 60.00134 * 16 15 13 44 44 H 1.08997 * 109.47563 * 300.00252 * 16 15 13 45 45 H 1.08007 * 118.17640 * 0.85757 * 18 17 16 46 46 H 1.08998 * 109.52186 * 109.18887 * 19 18 17 47 47 H 1.08999 * 109.51691 * 229.36942 * 19 18 17 48 48 H 0.97002 * 119.99820 * 180.02562 * 24 23 21 49 49 H 1.08996 * 109.78029 * 57.80236 * 29 20 19 50 50 H 1.09002 * 109.77908 * 178.61294 * 29 20 19 51 51 H 1.08998 * 109.43384 * 40.82027 * 30 17 16 52 52 H 1.09000 * 109.13218 * 281.42810 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0060 5 1 4.3908 1.2080 -0.0114 6 6 3.6142 -0.7152 -0.0031 7 6 4.8351 -1.5988 -0.0069 8 6 2.3272 -1.1329 0.0039 9 6 1.8600 -2.5657 0.0097 10 6 1.7085 -3.0469 1.4542 11 1 1.0453 -2.3713 1.9945 12 6 3.0801 -3.0656 2.1320 13 6 1.1252 -4.4363 1.4623 14 8 0.8566 -4.9873 0.4157 15 7 0.9010 -5.0663 2.6324 16 6 0.3334 -6.4169 2.6403 17 6 0.1844 -6.8908 4.0630 18 6 -0.9648 -6.7243 4.6353 19 6 -1.2574 -7.1348 6.0515 20 7 -0.1483 -7.9582 6.5543 21 6 -0.3774 -9.0941 7.2840 22 1 0.3679 -9.8752 7.3154 23 6 -1.5674 -9.2417 7.9832 24 7 -2.3361 -8.1960 8.2020 25 14 -2.0778 -10.9245 8.6136 26 1 -1.0476 -11.9265 8.2395 27 1 -2.2105 -10.8798 10.0919 28 1 -3.3806 -11.3045 8.0109 29 6 1.2201 -7.5110 6.2404 30 6 1.3792 -7.5175 4.7177 31 1 -0.3634 0.0039 1.0276 32 1 -0.3633 0.8880 -0.5173 33 1 -0.3633 -0.8919 -0.5105 34 1 5.1243 -1.8144 -1.0354 35 1 5.6537 -1.0896 0.5016 36 1 4.6102 -2.5315 0.5104 37 1 2.5911 -3.1884 -0.5058 38 1 0.8988 -2.6366 -0.4995 39 1 2.9721 -3.4080 3.1612 40 1 3.7432 -3.7412 1.5916 41 1 3.5020 -2.0606 2.1261 42 1 1.1155 -4.6255 3.4694 43 1 0.9965 -7.0928 2.1002 44 1 -0.6435 -6.4033 2.1573 45 1 -1.7589 -6.2692 4.0619 46 1 -1.3627 -6.2462 6.6739 47 1 -2.1816 -7.7120 6.0798 48 1 -3.1675 -8.2991 8.6909 49 1 1.3754 -6.5023 6.6231 50 1 1.9429 -8.1920 6.6897 51 1 2.2755 -6.9599 4.4464 52 1 1.4787 -8.5458 4.3701 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508231025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:51 Heat of formation + Delta-G solvation = 33.879786 kcal Electronic energy + Delta-G solvation = -30184.448022 eV Core-core repulsion = 26184.789041 eV Total energy + Delta-G solvation = -3999.658980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.39375 -40.87776 -39.34679 -36.49917 -36.03989 -34.50376 -34.34412 -32.71376 -31.87741 -31.37531 -29.51519 -28.53582 -28.48686 -26.50422 -26.05330 -24.47340 -23.89336 -22.70740 -21.16091 -21.03321 -19.97301 -19.47282 -18.40216 -18.07046 -17.26004 -17.12903 -16.93839 -16.41400 -16.15620 -15.69862 -15.59745 -15.21773 -15.16904 -14.82269 -14.65015 -14.45523 -14.22124 -13.97518 -13.86894 -13.81576 -13.51537 -13.37948 -13.24971 -13.22803 -13.10968 -12.89782 -12.86442 -12.79052 -12.65354 -12.59489 -12.18423 -12.08353 -12.01834 -11.78773 -11.69400 -11.36774 -11.24437 -10.78239 -10.67653 -10.17234 -10.00986 -9.62152 -9.26072 -8.73956 -7.87842 -5.28822 0.92271 1.22294 1.46633 1.48870 1.58697 1.72604 1.73411 2.00892 2.51553 2.53920 3.29462 3.64676 3.71141 3.77747 3.85749 3.91656 3.99705 4.06739 4.11540 4.25474 4.45026 4.48190 4.52639 4.55968 4.60060 4.70860 4.71334 4.76828 4.78977 4.80576 4.86972 4.93952 4.95531 4.96914 5.07603 5.12739 5.12872 5.19869 5.23555 5.28213 5.30986 5.40316 5.44869 5.49780 5.50370 5.62753 5.77682 5.80052 6.19564 6.34880 6.47888 6.64683 6.77361 7.14438 7.32369 7.84736 8.38116 9.20777 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023178 B = 0.001857 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.730153 B =15077.314013 C =15342.608337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.072 3.928 3 N -0.333 5.333 4 N -0.474 5.474 5 H 0.448 0.552 6 C 0.103 3.897 7 C -0.106 4.106 8 C -0.247 4.247 9 C -0.011 4.011 10 C -0.095 4.095 11 H 0.103 0.897 12 C -0.143 4.143 13 C 0.516 3.484 14 O -0.583 6.583 15 N -0.713 5.713 16 C 0.167 3.833 17 C -0.137 4.137 18 C -0.145 4.145 19 C 0.205 3.795 20 N -0.616 5.616 21 C -0.254 4.254 22 H 0.071 0.929 23 C -0.056 4.056 24 N -0.939 5.939 25 Si 0.967 3.033 26 H -0.267 1.267 27 H -0.293 1.293 28 H -0.292 1.292 29 C 0.138 3.862 30 C -0.083 4.083 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.411 0.589 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.111 0.889 46 H 0.014 0.986 47 H 0.055 0.945 48 H 0.249 0.751 49 H 0.028 0.972 50 H 0.059 0.941 51 H 0.091 0.909 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.824 16.348 -17.111 27.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 N -0.158 5.158 4 N -0.183 5.183 5 H 0.294 0.706 6 C -0.027 4.027 7 C -0.164 4.164 8 C -0.258 4.258 9 C -0.050 4.050 10 C -0.117 4.117 11 H 0.122 0.878 12 C -0.201 4.201 13 C 0.304 3.696 14 O -0.463 6.463 15 N -0.364 5.364 16 C 0.044 3.956 17 C -0.138 4.138 18 C -0.165 4.165 19 C 0.080 3.920 20 N -0.340 5.340 21 C -0.384 4.384 22 H 0.088 0.912 23 C -0.251 4.251 24 N -0.586 5.586 25 Si 0.795 3.205 26 H -0.191 1.191 27 H -0.220 1.220 28 H -0.219 1.219 29 C 0.013 3.987 30 C -0.122 4.122 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.247 0.753 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.129 0.871 46 H 0.031 0.969 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.046 0.954 50 H 0.077 0.923 51 H 0.109 0.891 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.538 17.201 -17.759 28.681 hybrid contribution -0.483 -1.068 1.020 1.554 sum 14.054 16.132 -16.740 27.166 Atomic orbital electron populations 1.20284 0.85898 1.03752 1.03714 1.22603 0.97844 0.90457 0.98469 1.77238 0.87696 1.23238 1.27581 1.46192 1.07044 1.05315 1.59750 0.70597 1.21307 0.97568 0.84873 0.98908 1.20877 0.92081 0.98727 1.04753 1.19712 0.91691 0.95797 1.18628 1.19512 1.01639 0.89729 0.94111 1.21270 0.99565 0.91544 0.99298 0.87849 1.21964 0.94163 1.03343 1.00588 1.21173 0.77034 0.88532 0.82850 1.90677 1.53795 1.68871 1.32983 1.46085 1.64303 1.16808 1.09233 1.20198 0.98507 0.83502 0.93422 1.20622 0.96119 1.02029 0.94985 1.22934 0.97467 0.98705 0.97432 1.19390 0.91513 0.92841 0.88246 1.44421 1.01219 1.27212 1.61124 1.19543 1.02858 0.94406 1.21598 0.91165 1.25738 0.99729 1.00384 0.99212 1.70170 1.14512 1.29162 1.44777 0.85207 0.77821 0.80315 0.77136 1.19102 1.21973 1.21912 1.21150 0.86223 0.97405 0.93911 1.20689 0.95721 1.00065 0.95719 0.89691 0.90713 0.89759 0.89113 0.88974 0.88355 0.90982 0.91690 0.91351 0.91338 0.90542 0.75305 0.91362 0.92326 0.87114 0.96881 0.92652 0.94166 0.95374 0.92261 0.89096 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.26 71.24 0.73 -0.46 16 2 C 0.07 1.40 7.22 43.10 0.31 1.71 16 3 N -0.33 -6.96 12.70 -47.38 -0.60 -7.57 16 4 N -0.47 -6.90 7.36 -48.00 -0.35 -7.25 16 5 H 0.45 3.71 8.96 -213.33 -1.91 1.80 16 6 C 0.10 1.39 6.26 41.41 0.26 1.65 16 7 C -0.11 -0.72 9.47 71.24 0.67 -0.04 16 8 C -0.25 -4.20 4.82 -20.14 -0.10 -4.30 16 9 C -0.01 -0.19 4.00 29.85 0.12 -0.07 16 10 C -0.10 -1.54 2.71 -11.54 -0.03 -1.57 16 11 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 12 C -0.14 -1.70 7.49 71.98 0.54 -1.16 16 13 C 0.52 11.71 7.15 87.65 0.63 12.34 16 14 O -0.58 -17.80 15.92 -3.03 -0.05 -17.85 16 15 N -0.71 -15.51 5.44 -466.80 -2.54 -18.05 16 16 C 0.17 4.42 5.66 85.63 0.48 4.91 16 17 C -0.14 -4.24 5.23 -15.14 -0.08 -4.32 16 18 C -0.14 -5.28 9.47 27.11 0.26 -5.02 16 19 C 0.21 9.75 5.23 85.42 0.45 10.20 16 20 N -0.62 -30.25 3.01 -703.40 -2.12 -32.37 16 21 C -0.25 -13.80 9.71 84.03 0.82 -12.98 16 22 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 23 C -0.06 -3.10 5.01 84.86 0.43 -2.68 16 24 N -0.94 -55.07 11.08 21.65 0.24 -54.83 16 25 Si 0.97 44.78 29.58 68.60 2.03 46.80 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 29 C 0.14 5.32 6.58 86.25 0.57 5.89 16 30 C -0.08 -2.55 5.94 29.65 0.18 -2.38 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.19 7.25 -2.39 -0.02 1.17 16 34 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.10 0.67 4.54 -2.39 -0.01 0.66 16 37 H 0.07 1.26 7.77 -2.39 -0.02 1.24 16 38 H 0.06 1.30 7.06 -2.39 -0.02 1.29 16 39 H 0.07 0.74 7.57 -2.39 -0.02 0.72 16 40 H 0.07 0.75 6.97 -2.39 -0.02 0.74 16 41 H 0.08 0.83 5.80 -2.38 -0.01 0.81 16 42 H 0.41 7.54 7.88 -92.71 -0.73 6.81 16 43 H 0.07 1.82 8.11 -2.38 -0.02 1.81 16 44 H 0.06 1.67 7.78 -2.39 -0.02 1.65 16 45 H 0.11 3.63 7.73 -2.91 -0.02 3.61 16 46 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.06 3.01 6.41 -2.39 -0.02 3.00 16 48 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 49 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.06 2.22 7.96 -2.39 -0.02 2.21 16 51 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -72.40 409.87 1.14 -71.26 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -1.70 Total: 18.15 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.23 Total: 1.70 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -5.37 Total: -120.06 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.05 Total: -17.85 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -72.40 1.14 -71.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508231025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.137 kcal (2) G-P(sol) polarization free energy of solvation -72.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds