Wall clock time and date at job start Wed Apr 1 2020 03:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30843 * 125.89982 * 2 1 4 4 N 1.40086 * 108.20468 * 180.02562 * 3 2 1 5 5 H 0.96992 * 126.03675 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92682 * 359.97438 * 4 3 2 7 7 C 1.50695 * 126.12663 * 179.73576 * 6 4 3 8 8 C 1.35321 * 107.74350 * 0.02562 * 6 4 3 9 9 C 1.50704 * 126.03793 * 179.97438 * 8 6 4 10 10 H 1.09001 * 109.47240 * 354.21271 * 9 8 6 11 11 C 1.52998 * 109.47279 * 234.21258 * 9 8 6 12 12 C 1.53003 * 109.46758 * 114.20947 * 9 8 6 13 13 C 1.50699 * 109.46874 * 186.61940 * 12 9 8 14 14 O 1.21277 * 120.00208 * 0.02562 * 13 12 9 15 15 N 1.34775 * 119.99873 * 179.97438 * 13 12 9 16 16 C 1.46499 * 120.00257 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47258 * 180.02562 * 16 15 13 18 18 H 1.08995 * 115.51863 * 330.58429 * 17 16 15 19 19 C 1.53000 * 117.43963 * 185.16969 * 17 16 15 20 20 H 1.09002 * 119.54002 * 4.11527 * 19 17 16 21 21 C 1.54387 * 118.12190 * 160.81133 * 19 17 16 22 22 N 1.48015 * 104.64796 * 87.21575 * 21 19 17 23 23 C 1.36937 * 127.84319 * 140.40700 * 22 21 19 24 24 H 1.07996 * 120.00235 * 195.39504 * 23 22 21 25 25 C 1.38816 * 119.99758 * 15.39059 * 23 22 21 26 26 N 1.31626 * 120.00044 * 8.90598 * 25 23 22 27 27 Si 1.86799 * 120.00218 * 188.89862 * 25 23 22 28 28 H 1.48507 * 109.46965 * 0.02562 * 27 25 23 29 29 H 1.48492 * 109.47142 * 120.00197 * 27 25 23 30 30 H 1.48497 * 109.47121 * 240.00681 * 27 25 23 31 31 C 1.48146 * 104.32000 * 320.45785 * 22 21 19 32 32 C 1.52999 * 117.43984 * 116.00386 * 17 16 15 33 33 H 1.09004 * 119.54304 * 355.87550 * 32 17 16 34 34 H 1.09000 * 109.46886 * 86.69564 * 1 2 3 35 35 H 1.08995 * 109.47137 * 206.70128 * 1 2 3 36 36 H 1.09000 * 109.47159 * 326.70330 * 1 2 3 37 37 H 1.08995 * 109.47482 * 90.02943 * 7 6 4 38 38 H 1.09010 * 109.47234 * 210.03120 * 7 6 4 39 39 H 1.09002 * 109.47430 * 330.02646 * 7 6 4 40 40 H 1.08997 * 109.46796 * 180.02562 * 11 9 8 41 41 H 1.08998 * 109.46562 * 299.99878 * 11 9 8 42 42 H 1.08994 * 109.47332 * 60.00007 * 11 9 8 43 43 H 1.09000 * 109.47010 * 306.61757 * 12 9 8 44 44 H 1.09002 * 109.47003 * 66.62279 * 12 9 8 45 45 H 0.97003 * 119.99776 * 0.02562 * 15 13 12 46 46 H 1.09001 * 109.47336 * 300.00659 * 16 15 13 47 47 H 1.09002 * 109.46881 * 60.00399 * 16 15 13 48 48 H 1.08994 * 110.41090 * 205.97150 * 21 19 17 49 49 H 1.09004 * 110.40700 * 328.40575 * 21 19 17 50 50 H 0.96999 * 119.99755 * 179.97438 * 26 25 23 51 51 H 1.09000 * 110.40776 * 280.74922 * 31 22 21 52 52 H 1.09002 * 110.40516 * 158.32041 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0599 0.0000 4 7 3.6088 0.6341 -0.0006 5 1 4.3908 1.2079 -0.0004 6 6 3.6143 -0.7154 -0.0004 7 6 4.8350 -1.5989 -0.0065 8 6 2.3271 -1.1330 -0.0002 9 6 1.8599 -2.5658 -0.0005 10 1 2.7192 -3.2282 -0.1045 11 6 0.8995 -2.7888 -1.1705 12 6 1.1396 -2.8675 1.3152 13 6 0.8159 -4.3376 1.3850 14 8 1.1307 -5.0719 0.4725 15 7 0.1775 -4.8367 2.4619 16 6 -0.1367 -6.2660 2.5300 17 6 -0.8571 -6.5677 3.8457 18 1 -0.6007 -5.9167 4.6814 19 6 -1.1639 -8.0329 4.1616 20 1 -0.8083 -8.8136 3.4891 21 6 -1.4634 -8.4140 5.6275 22 7 -2.9194 -8.1963 5.7808 23 6 -3.8163 -8.9683 6.4698 24 1 -4.8760 -8.8441 6.3026 25 6 -3.3634 -9.9107 7.3829 26 7 -2.0908 -9.9444 7.7173 27 14 -4.5600 -11.1307 8.1372 28 1 -5.9223 -10.8849 7.5995 29 1 -4.1367 -12.5132 7.7984 30 1 -4.5723 -10.9643 9.6127 31 6 -3.1864 -6.9542 5.0188 32 6 -2.2995 -7.0709 3.7605 33 1 -2.7900 -7.1347 2.7891 34 1 -0.3633 0.0592 -1.0260 35 1 -0.3633 -0.9180 0.4617 36 1 -0.3633 0.8590 0.5642 37 1 5.1344 -1.8122 1.0197 38 1 4.6051 -2.5329 -0.5195 39 1 5.6487 -1.0909 -0.5241 40 1 0.5613 -3.8250 -1.1704 41 1 0.0402 -2.1264 -1.0665 42 1 1.4127 -2.5739 -2.1078 43 1 1.7834 -2.5971 2.1521 44 1 0.2168 -2.2895 1.3651 45 1 -0.0740 -4.2495 3.1919 46 1 -0.7806 -6.5368 1.6932 47 1 0.7863 -6.8437 2.4800 48 1 -1.2154 -9.4602 5.8065 49 1 -0.9086 -7.7689 6.3088 50 1 -1.7745 -10.6027 8.3557 51 1 -2.9019 -6.0802 5.6047 52 1 -4.2383 -6.8989 4.7386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570937148.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:34 Heat of formation + Delta-G solvation = 76.953795 kcal Electronic energy + Delta-G solvation = -29652.424840 eV Core-core repulsion = 25654.633689 eV Total energy + Delta-G solvation = -3997.791151 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.79107 -39.87721 -38.76858 -35.77152 -34.81308 -33.67138 -33.33236 -31.09759 -30.75762 -28.74050 -28.37888 -27.14595 -27.08866 -26.71424 -24.74009 -22.64411 -21.13127 -20.66328 -20.49922 -19.70498 -19.39016 -19.24203 -17.33853 -17.14466 -16.79541 -15.99302 -15.72394 -15.46294 -15.02112 -14.68611 -14.27882 -14.08614 -14.01923 -13.77036 -13.67409 -13.38552 -13.22021 -13.05722 -12.90601 -12.82951 -12.72293 -12.66851 -12.51928 -12.22857 -11.84606 -11.55129 -11.38381 -11.26648 -11.17405 -11.08052 -10.85343 -10.64802 -10.50192 -10.30395 -10.11356 -9.86625 -9.74393 -9.55473 -9.36911 -9.12740 -8.90910 -8.67138 -8.64146 -6.87811 -5.80950 -3.15225 1.52376 2.37571 2.51760 2.63363 3.18717 3.37045 3.43143 3.45555 4.14169 4.27477 4.32796 4.45546 4.55157 4.66440 4.79663 4.89536 4.92064 4.94195 5.05575 5.16317 5.28471 5.29723 5.32008 5.39463 5.40458 5.42371 5.44798 5.48958 5.52236 5.63211 5.69905 5.78838 5.81865 5.90252 5.92580 5.96207 5.99857 6.13636 6.21404 6.22687 6.38040 6.46620 6.57017 6.66269 6.71271 6.91609 6.95638 7.35208 7.38680 7.50910 7.52781 7.71279 8.20275 8.22573 9.10279 9.72884 10.49770 11.33303 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025998 B = 0.001619 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.766682 B =17288.545776 C =17517.251912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.088 3.912 3 N -0.298 5.298 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.091 3.909 7 C -0.096 4.096 8 C -0.227 4.227 9 C 0.007 3.993 10 H 0.083 0.917 11 C -0.152 4.152 12 C -0.136 4.136 13 C 0.511 3.489 14 O -0.542 6.542 15 N -0.726 5.726 16 C 0.155 3.845 17 C -0.150 4.150 18 H 0.102 0.898 19 C -0.162 4.162 20 H 0.103 0.897 21 C 0.183 3.817 22 N -0.595 5.595 23 C -0.226 4.226 24 H 0.077 0.923 25 C -0.007 4.007 26 N -0.916 5.916 27 Si 0.913 3.087 28 H -0.278 1.278 29 H -0.289 1.289 30 H -0.290 1.290 31 C 0.154 3.846 32 C -0.171 4.171 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.401 0.599 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.023 0.977 50 H 0.254 0.746 51 H 0.024 0.976 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.242 20.055 -16.506 28.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.079 4.079 3 N -0.121 5.121 4 N -0.187 5.187 5 H 0.280 0.720 6 C -0.038 4.038 7 C -0.155 4.155 8 C -0.238 4.238 9 C -0.013 4.013 10 H 0.101 0.899 11 C -0.209 4.209 12 C -0.176 4.176 13 C 0.297 3.703 14 O -0.419 6.419 15 N -0.377 5.377 16 C 0.031 3.969 17 C -0.169 4.169 18 H 0.120 0.880 19 C -0.183 4.183 20 H 0.121 0.879 21 C 0.058 3.942 22 N -0.318 5.318 23 C -0.354 4.354 24 H 0.095 0.905 25 C -0.204 4.204 26 N -0.562 5.562 27 Si 0.743 3.257 28 H -0.204 1.204 29 H -0.216 1.216 30 H -0.217 1.217 31 C 0.028 3.972 32 C -0.191 4.191 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.235 0.765 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.109 0.891 49 H 0.041 0.959 50 H 0.064 0.936 51 H 0.041 0.959 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.422 20.569 -16.953 29.407 hybrid contribution -0.153 -0.793 0.811 1.145 sum 12.269 19.775 -16.142 28.322 Atomic orbital electron populations 1.20392 0.86879 1.03443 1.03195 1.22183 0.96868 0.90131 0.98671 1.77289 0.86491 1.22375 1.25979 1.46141 1.07289 1.04811 1.60442 0.71985 1.20913 0.97009 0.84896 1.00961 1.20515 0.92730 0.98590 1.03649 1.19705 0.91023 0.96043 1.17024 1.19119 0.98619 0.90096 0.93470 0.89867 1.22005 0.98790 1.03096 0.97031 1.21819 1.02765 0.92817 1.00190 1.20676 0.77282 0.90492 0.81801 1.90671 1.53022 1.60904 1.37342 1.46105 1.59733 1.10371 1.21528 1.20851 0.99306 0.80460 0.96258 1.22532 0.97870 0.99106 0.97354 0.87995 1.24214 1.01869 0.90190 1.01986 0.87929 1.21048 0.84600 1.01818 0.86773 1.45187 1.04444 1.23512 1.58669 1.19048 0.88251 1.13036 1.15081 0.90516 1.24901 0.96568 1.00874 0.98026 1.69907 1.13251 1.37061 1.36002 0.86041 0.80009 0.80994 0.78678 1.20356 1.21609 1.21698 1.21142 0.96218 0.90199 0.89690 1.23966 0.89468 1.05547 1.00126 0.87953 0.90328 0.89965 0.90838 0.89959 0.89194 0.91109 0.90643 0.92733 0.93084 0.89025 0.88737 0.76450 0.91516 0.91251 0.89134 0.95939 0.93609 0.95857 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 8.76 36.01 0.32 -0.25 16 2 C 0.09 0.82 7.05 -82.40 -0.58 0.24 16 3 N -0.30 -3.08 12.70 33.67 0.43 -2.65 16 4 N -0.48 -3.73 7.36 33.48 0.25 -3.49 16 5 H 0.44 2.07 8.96 -182.62 -1.64 0.44 16 6 C 0.09 0.69 7.21 -82.26 -0.59 0.10 16 7 C -0.10 -0.46 10.11 36.00 0.36 -0.10 16 8 C -0.23 -1.98 4.80 -105.05 -0.50 -2.48 16 9 C 0.01 0.06 2.14 -91.77 -0.20 -0.14 16 10 H 0.08 0.78 6.51 -51.93 -0.34 0.44 16 11 C -0.15 -1.38 8.74 37.16 0.32 -1.06 16 12 C -0.14 -1.10 5.01 -27.88 -0.14 -1.24 16 13 C 0.51 5.66 7.55 -10.99 -0.08 5.58 16 14 O -0.54 -7.83 14.06 5.56 0.08 -7.75 16 15 N -0.73 -7.73 5.56 -60.29 -0.33 -8.06 16 16 C 0.15 2.00 5.95 -4.04 -0.02 1.97 16 17 C -0.15 -2.21 5.40 -90.62 -0.49 -2.70 16 18 H 0.10 1.50 8.04 -51.93 -0.42 1.08 16 19 C -0.16 -3.00 6.85 -89.29 -0.61 -3.61 16 20 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 21 C 0.18 4.34 5.70 -2.48 -0.01 4.32 16 22 N -0.59 -15.08 3.38 -168.97 -0.57 -15.65 16 23 C -0.23 -6.26 10.36 -15.06 -0.16 -6.41 16 24 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 25 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 26 N -0.92 -26.63 10.85 55.49 0.60 -26.03 16 27 Si 0.91 21.81 29.56 -169.99 -5.03 16.78 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 31 C 0.15 3.15 7.04 -2.41 -0.02 3.13 16 32 C -0.17 -2.94 6.74 -89.30 -0.60 -3.54 16 33 H 0.10 1.63 8.12 -51.93 -0.42 1.21 16 34 H 0.08 0.49 8.02 -51.93 -0.42 0.07 16 35 H 0.08 0.49 4.69 -51.93 -0.24 0.25 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.45 7.06 -51.92 -0.37 0.08 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 0.84 6.10 -51.93 -0.32 0.52 16 41 H 0.05 0.43 5.46 -51.93 -0.28 0.15 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.64 5.76 -51.93 -0.30 0.34 16 45 H 0.40 3.41 8.40 -40.82 -0.34 3.07 16 46 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 47 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.09 2.41 6.49 -51.93 -0.34 2.07 16 49 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 51 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 52 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 408.68 15.07 6.16 6.16 Total: -1.00 -33.86 408.68 -11.12 -44.98 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -9.61 Total: 2.17 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.10 Total: -6.46 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.37 Total: -55.89 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.08 Total: -7.75 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.86 -11.12 -44.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570937148.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.938 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds