Wall clock time and date at job start Wed Apr 1 2020 03:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30843 * 125.89982 * 2 1 4 4 N 1.40086 * 108.20468 * 180.02562 * 3 2 1 5 5 H 0.96992 * 126.03675 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92682 * 359.97438 * 4 3 2 7 7 C 1.50695 * 126.12663 * 179.73576 * 6 4 3 8 8 C 1.35321 * 107.74350 * 0.02562 * 6 4 3 9 9 C 1.50704 * 126.03793 * 179.97438 * 8 6 4 10 10 H 1.09001 * 109.47240 * 354.21271 * 9 8 6 11 11 C 1.52998 * 109.47279 * 234.21258 * 9 8 6 12 12 C 1.53003 * 109.46758 * 114.20947 * 9 8 6 13 13 C 1.50699 * 109.46874 * 186.61940 * 12 9 8 14 14 O 1.21277 * 120.00208 * 0.02562 * 13 12 9 15 15 N 1.34775 * 119.99873 * 179.97438 * 13 12 9 16 16 C 1.46499 * 120.00257 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47258 * 180.02562 * 16 15 13 18 18 H 1.08995 * 115.51863 * 330.58429 * 17 16 15 19 19 C 1.53000 * 117.43963 * 185.16969 * 17 16 15 20 20 H 1.09002 * 119.54002 * 4.11527 * 19 17 16 21 21 C 1.54387 * 118.12190 * 160.81133 * 19 17 16 22 22 N 1.48015 * 104.64796 * 87.21575 * 21 19 17 23 23 C 1.36937 * 127.84319 * 140.40700 * 22 21 19 24 24 H 1.07996 * 120.00235 * 195.39504 * 23 22 21 25 25 C 1.38816 * 119.99758 * 15.39059 * 23 22 21 26 26 N 1.31626 * 120.00044 * 8.90598 * 25 23 22 27 27 Si 1.86799 * 120.00218 * 188.89862 * 25 23 22 28 28 H 1.48507 * 109.46965 * 0.02562 * 27 25 23 29 29 H 1.48492 * 109.47142 * 120.00197 * 27 25 23 30 30 H 1.48497 * 109.47121 * 240.00681 * 27 25 23 31 31 C 1.48146 * 104.32000 * 320.45785 * 22 21 19 32 32 C 1.52999 * 117.43984 * 116.00386 * 17 16 15 33 33 H 1.09004 * 119.54304 * 355.87550 * 32 17 16 34 34 H 1.09000 * 109.46886 * 86.69564 * 1 2 3 35 35 H 1.08995 * 109.47137 * 206.70128 * 1 2 3 36 36 H 1.09000 * 109.47159 * 326.70330 * 1 2 3 37 37 H 1.08995 * 109.47482 * 90.02943 * 7 6 4 38 38 H 1.09010 * 109.47234 * 210.03120 * 7 6 4 39 39 H 1.09002 * 109.47430 * 330.02646 * 7 6 4 40 40 H 1.08997 * 109.46796 * 180.02562 * 11 9 8 41 41 H 1.08998 * 109.46562 * 299.99878 * 11 9 8 42 42 H 1.08994 * 109.47332 * 60.00007 * 11 9 8 43 43 H 1.09000 * 109.47010 * 306.61757 * 12 9 8 44 44 H 1.09002 * 109.47003 * 66.62279 * 12 9 8 45 45 H 0.97003 * 119.99776 * 0.02562 * 15 13 12 46 46 H 1.09001 * 109.47336 * 300.00659 * 16 15 13 47 47 H 1.09002 * 109.46881 * 60.00399 * 16 15 13 48 48 H 1.08994 * 110.41090 * 205.97150 * 21 19 17 49 49 H 1.09004 * 110.40700 * 328.40575 * 21 19 17 50 50 H 0.96999 * 119.99755 * 179.97438 * 26 25 23 51 51 H 1.09000 * 110.40776 * 280.74922 * 31 22 21 52 52 H 1.09002 * 110.40516 * 158.32041 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0599 0.0000 4 7 3.6088 0.6341 -0.0006 5 1 4.3908 1.2079 -0.0004 6 6 3.6143 -0.7154 -0.0004 7 6 4.8350 -1.5989 -0.0065 8 6 2.3271 -1.1330 -0.0002 9 6 1.8599 -2.5658 -0.0005 10 1 2.7192 -3.2282 -0.1045 11 6 0.8995 -2.7888 -1.1705 12 6 1.1396 -2.8675 1.3152 13 6 0.8159 -4.3376 1.3850 14 8 1.1307 -5.0719 0.4725 15 7 0.1775 -4.8367 2.4619 16 6 -0.1367 -6.2660 2.5300 17 6 -0.8571 -6.5677 3.8457 18 1 -0.6007 -5.9167 4.6814 19 6 -1.1639 -8.0329 4.1616 20 1 -0.8083 -8.8136 3.4891 21 6 -1.4634 -8.4140 5.6275 22 7 -2.9194 -8.1963 5.7808 23 6 -3.8163 -8.9683 6.4698 24 1 -4.8760 -8.8441 6.3026 25 6 -3.3634 -9.9107 7.3829 26 7 -2.0908 -9.9444 7.7173 27 14 -4.5600 -11.1307 8.1372 28 1 -5.9223 -10.8849 7.5995 29 1 -4.1367 -12.5132 7.7984 30 1 -4.5723 -10.9643 9.6127 31 6 -3.1864 -6.9542 5.0188 32 6 -2.2995 -7.0709 3.7605 33 1 -2.7900 -7.1347 2.7891 34 1 -0.3633 0.0592 -1.0260 35 1 -0.3633 -0.9180 0.4617 36 1 -0.3633 0.8590 0.5642 37 1 5.1344 -1.8122 1.0197 38 1 4.6051 -2.5329 -0.5195 39 1 5.6487 -1.0909 -0.5241 40 1 0.5613 -3.8250 -1.1704 41 1 0.0402 -2.1264 -1.0665 42 1 1.4127 -2.5739 -2.1078 43 1 1.7834 -2.5971 2.1521 44 1 0.2168 -2.2895 1.3651 45 1 -0.0740 -4.2495 3.1919 46 1 -0.7806 -6.5368 1.6932 47 1 0.7863 -6.8437 2.4800 48 1 -1.2154 -9.4602 5.8065 49 1 -0.9086 -7.7689 6.3088 50 1 -1.7745 -10.6027 8.3557 51 1 -2.9019 -6.0802 5.6047 52 1 -4.2383 -6.8989 4.7386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570937148.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:33 Heat of formation + Delta-G solvation = 55.477146 kcal Electronic energy + Delta-G solvation = -29653.356137 eV Core-core repulsion = 25654.633689 eV Total energy + Delta-G solvation = -3998.722448 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.39599 -40.89474 -40.17401 -36.64055 -35.96948 -34.91459 -34.21916 -32.73228 -31.51642 -29.69594 -28.98230 -28.85190 -28.07897 -27.63022 -26.27206 -23.46414 -22.72301 -21.80712 -21.08452 -20.91249 -20.74591 -20.01709 -18.83052 -17.98588 -17.93150 -17.03886 -16.67986 -16.56977 -16.07152 -16.00225 -15.50859 -15.29561 -14.95284 -14.62161 -14.60166 -14.41844 -14.26057 -14.07572 -13.97913 -13.69543 -13.44830 -13.37972 -13.29082 -13.17154 -13.08784 -12.89418 -12.78441 -12.71829 -12.26872 -12.22429 -12.04589 -11.95193 -11.89432 -11.80585 -11.75114 -11.15809 -10.99106 -10.76599 -10.65324 -10.45400 -10.16161 -9.91642 -9.27847 -8.89541 -7.91129 -5.27151 0.93380 1.46758 1.47681 1.58428 1.74302 1.78189 2.00418 2.27628 2.48174 2.78816 3.27448 3.64798 3.72053 3.74551 3.78498 3.87706 3.90401 4.06929 4.23480 4.26067 4.30703 4.31693 4.43447 4.46117 4.51933 4.59896 4.66176 4.71751 4.73770 4.79783 4.81360 4.82280 4.89390 4.96953 5.00194 5.04820 5.08413 5.16759 5.20165 5.27533 5.35061 5.37662 5.46371 5.48157 5.49572 5.55521 5.60542 5.68522 5.83565 6.19553 6.47478 6.68546 6.78603 7.02481 7.38759 7.69629 8.47658 9.22646 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025998 B = 0.001619 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.766682 B =17288.545776 C =17517.251912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.080 3.920 3 N -0.334 5.334 4 N -0.475 5.475 5 H 0.447 0.553 6 C 0.094 3.906 7 C -0.095 4.095 8 C -0.243 4.243 9 C 0.013 3.987 10 H 0.074 0.926 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.512 3.488 14 O -0.577 6.577 15 N -0.719 5.719 16 C 0.164 3.836 17 C -0.107 4.107 18 H 0.109 0.891 19 C -0.179 4.179 20 H 0.111 0.889 21 C 0.189 3.811 22 N -0.621 5.621 23 C -0.239 4.239 24 H 0.081 0.919 25 C -0.064 4.064 26 N -0.948 5.948 27 Si 0.979 3.021 28 H -0.264 1.264 29 H -0.292 1.292 30 H -0.291 1.291 31 C 0.148 3.852 32 C -0.160 4.160 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.414 0.586 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.052 0.948 49 H 0.002 0.998 50 H 0.249 0.751 51 H 0.029 0.971 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.212 21.494 -17.458 30.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 N -0.158 5.158 4 N -0.184 5.184 5 H 0.293 0.707 6 C -0.035 4.035 7 C -0.154 4.154 8 C -0.254 4.254 9 C -0.007 4.007 10 H 0.093 0.907 11 C -0.205 4.205 12 C -0.167 4.167 13 C 0.300 3.700 14 O -0.456 6.456 15 N -0.371 5.371 16 C 0.040 3.960 17 C -0.126 4.126 18 H 0.127 0.873 19 C -0.199 4.199 20 H 0.129 0.871 21 C 0.063 3.937 22 N -0.346 5.346 23 C -0.367 4.367 24 H 0.099 0.901 25 C -0.258 4.258 26 N -0.596 5.596 27 Si 0.807 3.193 28 H -0.189 1.189 29 H -0.219 1.219 30 H -0.218 1.218 31 C 0.023 3.977 32 C -0.179 4.179 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.125 0.875 44 H 0.131 0.869 45 H 0.251 0.749 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.020 0.980 50 H 0.058 0.942 51 H 0.046 0.954 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.383 22.066 -17.915 31.003 hybrid contribution -0.098 -1.177 1.084 1.603 sum 12.285 20.889 -16.831 29.505 Atomic orbital electron populations 1.20479 0.85684 1.04120 1.03743 1.22547 0.97844 0.90067 0.98139 1.77232 0.87621 1.23400 1.27522 1.46181 1.07116 1.05173 1.59975 0.70685 1.21352 0.97749 0.85043 0.99380 1.20607 0.92119 0.98086 1.04539 1.19747 0.91520 0.95773 1.18352 1.19008 0.98194 0.89984 0.93477 0.90726 1.21950 0.99346 1.01963 0.97257 1.21813 1.03844 0.90625 1.00430 1.21145 0.76360 0.91430 0.81024 1.90670 1.54376 1.61990 1.38609 1.45988 1.59566 1.09516 1.22056 1.20611 0.98765 0.81920 0.94682 1.22426 0.95818 0.95948 0.98384 0.87303 1.23896 1.04601 0.92730 0.98677 0.87068 1.20776 0.84041 0.99131 0.89745 1.45515 1.04769 1.25224 1.59050 1.19424 0.89014 1.13313 1.14994 0.90146 1.25737 0.98219 1.02830 0.99007 1.70099 1.14990 1.37754 1.36728 0.85006 0.78550 0.78266 0.77460 1.18869 1.21857 1.21830 1.21303 0.97476 0.88417 0.90479 1.23893 0.89603 1.05031 0.99419 0.85880 0.89783 0.88910 0.90526 0.88937 0.89381 0.89251 0.92650 0.91568 0.93451 0.87539 0.86940 0.74901 0.91631 0.91622 0.92981 0.98024 0.94162 0.95358 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 8.76 71.24 0.62 -0.37 16 2 C 0.08 1.38 7.05 43.10 0.30 1.68 16 3 N -0.33 -6.54 12.70 -47.38 -0.60 -7.14 16 4 N -0.47 -6.73 7.36 -48.00 -0.35 -7.08 16 5 H 0.45 3.63 8.96 -213.34 -1.91 1.72 16 6 C 0.09 1.27 7.21 41.40 0.30 1.57 16 7 C -0.10 -0.71 10.11 71.23 0.72 0.01 16 8 C -0.24 -3.83 4.80 -20.14 -0.10 -3.93 16 9 C 0.01 0.21 2.14 -11.54 -0.02 0.19 16 10 H 0.07 1.30 6.51 -2.39 -0.02 1.28 16 11 C -0.15 -2.52 8.74 71.98 0.63 -1.89 16 12 C -0.13 -1.74 5.01 29.85 0.15 -1.59 16 13 C 0.51 10.19 7.55 87.66 0.66 10.85 16 14 O -0.58 -15.86 14.06 -3.02 -0.04 -15.90 16 15 N -0.72 -13.23 5.56 -463.06 -2.57 -15.80 16 16 C 0.16 3.82 5.95 86.38 0.51 4.34 16 17 C -0.11 -2.91 5.40 -10.79 -0.06 -2.96 16 18 H 0.11 2.90 8.04 -2.39 -0.02 2.88 16 19 C -0.18 -6.48 6.85 -9.94 -0.07 -6.54 16 20 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 21 C 0.19 9.16 5.70 86.56 0.49 9.65 16 22 N -0.62 -31.82 3.38 -688.50 -2.33 -34.15 16 23 C -0.24 -13.35 10.36 84.03 0.87 -12.48 16 24 H 0.08 4.31 7.84 -2.91 -0.02 4.28 16 25 C -0.06 -3.65 5.40 84.86 0.46 -3.20 16 26 N -0.95 -56.89 10.85 21.65 0.23 -56.65 16 27 Si 0.98 45.43 29.56 68.60 2.03 47.45 16 28 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 29 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 30 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 31 C 0.15 5.90 7.04 86.53 0.61 6.51 16 32 C -0.16 -5.15 6.74 -9.94 -0.07 -5.22 16 33 H 0.12 3.52 8.12 -2.38 -0.02 3.51 16 34 H 0.08 0.91 8.02 -2.39 -0.02 0.89 16 35 H 0.09 0.87 4.69 -2.39 -0.01 0.86 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.09 0.73 7.06 -2.38 -0.02 0.71 16 39 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.05 1.18 6.10 -2.39 -0.01 1.17 16 41 H 0.07 0.93 5.46 -2.39 -0.01 0.92 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.11 1.15 5.76 -2.39 -0.01 1.14 16 45 H 0.41 5.59 8.40 -92.71 -0.78 4.81 16 46 H 0.07 1.61 7.93 -2.39 -0.02 1.59 16 47 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.05 2.90 6.49 -2.39 -0.02 2.88 16 49 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 50 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 51 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -74.96 408.68 0.65 -74.31 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -1.74 Total: 18.34 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 6.02 Total: -3.37 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -5.62 Total: -120.83 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.04 Total: -15.90 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -74.96 0.65 -74.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570937148.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.787 kcal (2) G-P(sol) polarization free energy of solvation -74.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds