Wall clock time and date at job start Wed Apr 1 2020 04:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34855 * 125.96468 * 2 1 4 4 N 1.36130 * 106.74899 * 180.02562 * 3 2 1 5 5 C 1.35614 * 107.39334 * 359.90016 * 4 3 2 6 6 N 1.30090 * 108.57193 * 0.07579 * 5 4 3 7 7 C 1.51043 * 124.03371 * 179.97438 * 5 4 3 8 8 C 1.53399 * 108.21383 * 344.17239 * 7 5 4 9 9 H 1.08999 * 109.50847 * 288.89600 * 8 7 5 10 10 C 1.50700 * 109.55057 * 168.77316 * 8 7 5 11 11 O 1.21271 * 120.00207 * 247.67329 * 10 8 7 12 12 N 1.34775 * 119.99669 * 67.67077 * 10 8 7 13 13 C 1.46499 * 119.99806 * 184.54762 * 12 10 8 14 14 C 1.46501 * 120.00497 * 4.54680 * 12 10 8 15 15 H 1.09007 * 109.46799 * 356.08504 * 14 12 10 16 16 C 1.52998 * 109.47242 * 236.08526 * 14 12 10 17 17 N 1.46505 * 109.47194 * 54.99994 * 16 14 12 18 18 C 1.36931 * 119.99791 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00155 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00153 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99488 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00520 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47314 * 59.99465 * 22 20 18 24 24 H 1.48496 * 109.47543 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46896 * 299.99918 * 22 20 18 26 26 C 1.53001 * 109.47242 * 116.07840 * 14 12 10 27 27 C 1.52996 * 117.50111 * 248.75135 * 26 14 12 28 28 C 1.52998 * 117.49784 * 180.08525 * 26 14 12 29 29 C 1.53153 * 109.23678 * 48.82052 * 8 7 5 30 30 C 1.46471 * 127.92708 * 180.27538 * 4 3 2 31 31 H 1.08999 * 109.46786 * 270.00115 * 1 2 3 32 32 H 1.09007 * 109.47021 * 29.99714 * 1 2 3 33 33 H 1.08994 * 109.47251 * 149.99660 * 1 2 3 34 34 H 1.07998 * 126.65363 * 359.95736 * 3 2 1 35 35 H 1.08999 * 109.71426 * 224.49508 * 7 5 4 36 36 H 1.09002 * 109.75361 * 103.87801 * 7 5 4 37 37 H 1.08994 * 109.47492 * 84.59921 * 13 12 10 38 38 H 1.09005 * 109.46890 * 204.59764 * 13 12 10 39 39 H 1.08999 * 109.46959 * 324.59104 * 13 12 10 40 40 H 1.09005 * 109.46841 * 174.99688 * 16 14 12 41 41 H 1.08993 * 109.47077 * 294.99507 * 16 14 12 42 42 H 0.97001 * 119.99677 * 359.97438 * 17 16 14 43 43 H 0.97004 * 120.00172 * 180.02562 * 21 20 18 44 44 H 1.09002 * 115.54663 * 34.42821 * 26 14 12 45 45 H 1.08995 * 117.49918 * 359.97438 * 27 26 14 46 46 H 1.09000 * 117.50242 * 145.02599 * 27 26 14 47 47 H 1.08995 * 117.50421 * 214.98321 * 28 26 14 48 48 H 1.09000 * 117.50070 * 359.97438 * 28 26 14 49 49 H 1.08997 * 109.46627 * 170.50619 * 29 8 7 50 50 H 1.09005 * 109.46086 * 50.52118 * 29 8 7 51 51 H 1.08998 * 109.57962 * 42.79013 * 30 4 3 52 52 H 1.08994 * 109.58372 * 282.51357 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5845 0.6434 -0.0006 5 6 3.5413 -0.7120 0.0013 6 7 2.2956 -1.0869 0.0014 7 6 4.7655 -1.5967 0.0009 8 6 5.9747 -0.7419 -0.3994 9 1 5.9075 -0.4890 -1.4575 10 6 7.2440 -1.5138 -0.1460 11 8 8.0103 -1.1527 0.7217 12 7 7.5274 -2.6055 -0.8838 13 6 8.7095 -3.4130 -0.5728 14 6 6.6535 -2.9847 -1.9968 15 1 5.7962 -2.3123 -2.0308 16 6 6.1672 -4.4214 -1.7967 17 7 5.5274 -4.5422 -0.4843 18 6 5.0122 -5.7454 -0.0819 19 1 5.0779 -6.6055 -0.7319 20 6 4.4065 -5.8601 1.1618 21 7 4.3279 -4.8123 1.9545 22 14 3.7044 -7.5016 1.7111 23 1 4.7874 -8.5170 1.7445 24 1 3.1162 -7.3596 3.0672 25 1 2.6506 -7.9330 0.7578 26 6 7.4303 -2.8874 -3.3113 27 6 7.0265 -1.7835 -4.2906 28 6 6.6861 -3.2437 -4.5997 29 6 5.9824 0.5430 0.4340 30 6 4.8148 1.4381 0.0047 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8901 -0.5138 33 1 -0.3633 -0.8899 -0.5139 34 1 1.9764 2.1221 -0.0006 35 1 4.6338 -2.4063 -0.7170 36 1 4.9213 -2.0106 0.9971 37 1 8.4647 -4.1281 0.2125 38 1 9.0283 -3.9497 -1.4664 39 1 9.5152 -2.7620 -0.2332 40 1 5.4479 -4.6734 -2.5761 41 1 7.0158 -5.1032 -1.8514 42 1 5.4695 -3.7700 0.0999 43 1 3.9050 -4.8924 2.8238 44 1 8.4875 -3.1464 -3.2528 45 1 6.2070 -1.1268 -3.9986 46 1 7.8178 -1.3164 -4.8768 47 1 7.2537 -3.7365 -5.3890 48 1 5.6431 -3.5478 -4.5108 49 1 6.9224 1.0719 0.2773 50 1 5.8785 0.2918 1.4896 51 1 4.7119 2.2660 0.7062 52 1 5.0022 1.8280 -0.9957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676227449.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:05 Heat of formation + Delta-G solvation = 72.193706 kcal Electronic energy + Delta-G solvation = -32905.133887 eV Core-core repulsion = 28907.136323 eV Total energy + Delta-G solvation = -3997.997564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.11199 -40.19174 -37.91434 -36.21337 -35.29413 -33.82624 -33.11808 -31.32115 -31.06918 -29.04111 -28.19974 -27.42872 -26.18138 -24.20153 -23.88034 -22.58415 -22.46714 -21.63378 -20.52041 -20.04651 -19.01819 -18.69507 -17.28903 -17.06372 -16.64477 -15.95817 -15.60688 -15.25388 -14.89538 -14.61132 -14.34808 -14.08212 -13.96488 -13.68194 -13.56368 -13.46979 -13.26272 -12.99583 -12.75789 -12.49062 -12.41277 -12.11326 -12.04404 -11.76012 -11.67320 -11.61487 -11.55786 -11.43817 -11.15894 -11.04034 -10.87358 -10.80251 -10.69195 -10.41381 -10.17133 -9.91576 -9.63631 -9.50641 -9.40363 -9.22123 -8.83027 -8.30972 -7.87927 -6.88756 -5.69974 -2.99230 2.28843 2.83770 2.95501 3.19220 3.45531 3.49548 3.53919 3.55430 3.80157 4.31642 4.49853 4.56008 4.61266 4.66444 4.74602 4.90206 4.97070 5.03241 5.10148 5.14967 5.20971 5.27056 5.32108 5.47401 5.48749 5.53979 5.60723 5.65230 5.67747 5.71654 5.77580 5.84513 5.89956 5.92965 5.97548 6.02868 6.08088 6.12841 6.19145 6.23119 6.28885 6.31181 6.49067 6.49649 6.60947 6.65669 6.84434 7.08594 7.45843 7.65720 7.75645 8.41939 8.47801 8.52577 9.59620 10.12931 10.48107 11.52054 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006798 B = 0.005589 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4117.813435 B = 5008.241617 C = 7154.820939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.007 4.007 3 C -0.067 4.067 4 N -0.462 5.462 5 C 0.230 3.770 6 N -0.468 5.468 7 C -0.035 4.035 8 C -0.113 4.113 9 H 0.095 0.905 10 C 0.528 3.472 11 O -0.542 6.542 12 N -0.590 5.590 13 C 0.090 3.910 14 C 0.150 3.850 15 H 0.094 0.906 16 C 0.143 3.857 17 N -0.731 5.731 18 C -0.247 4.247 19 H 0.068 0.932 20 C -0.005 4.005 21 N -0.923 5.923 22 Si 0.905 3.095 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.286 1.286 26 C -0.161 4.161 27 C -0.182 4.182 28 C -0.168 4.168 29 C -0.115 4.115 30 C 0.107 3.893 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.169 0.831 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.033 0.967 41 H 0.026 0.974 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.090 0.910 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 14.173 -10.569 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.136 4.136 3 C -0.199 4.199 4 N -0.146 5.146 5 C -0.032 4.032 6 N -0.187 5.187 7 C -0.074 4.074 8 C -0.135 4.135 9 H 0.113 0.887 10 C 0.316 3.684 11 O -0.420 6.420 12 N -0.321 5.321 13 C -0.052 4.052 14 C 0.045 3.955 15 H 0.112 0.888 16 C 0.015 3.985 17 N -0.378 5.378 18 C -0.378 4.378 19 H 0.086 0.914 20 C -0.202 4.202 21 N -0.571 5.571 22 Si 0.737 3.263 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.180 4.180 27 C -0.219 4.219 28 C -0.206 4.206 29 C -0.153 4.153 30 C -0.016 4.016 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.186 0.814 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.224 0.776 43 H 0.066 0.934 44 H 0.126 0.874 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.113 0.887 48 H 0.119 0.881 49 H 0.114 0.886 50 H 0.104 0.896 51 H 0.109 0.891 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.342 13.487 -10.067 17.159 hybrid contribution -0.189 0.139 0.494 0.546 sum 3.154 13.626 -9.574 16.949 Atomic orbital electron populations 1.19968 0.88095 1.02160 1.01889 1.20824 0.96412 0.88481 1.07909 1.22098 0.83124 0.99983 1.14684 1.45420 1.06209 1.07534 1.55440 1.23237 0.94876 0.80838 1.04284 1.70094 0.99638 1.29620 1.19302 1.20570 0.84864 0.95043 1.06951 1.21455 0.94169 0.96161 1.01708 0.88722 1.20147 0.86785 0.80358 0.81119 1.90659 1.50240 1.68288 1.32815 1.47595 1.26864 1.26276 1.31374 1.21558 0.87034 0.95302 1.01319 1.21256 0.91491 0.99232 0.83471 0.88816 1.20977 0.95791 0.91416 0.90339 1.42530 1.69060 1.11561 1.14686 1.19069 1.30727 0.88522 0.99509 0.91365 1.24691 1.01330 0.97150 0.97010 1.69598 1.48801 1.28313 1.10354 0.86308 0.78825 0.83545 0.77668 1.21486 1.21766 1.21287 1.22595 1.00305 1.04407 0.90726 1.23022 1.03386 0.91946 1.03499 1.22948 1.01846 0.97675 0.98132 1.21715 0.97594 0.94405 1.01549 1.21948 0.82434 0.94373 1.02796 0.91744 0.91876 0.91254 0.81404 0.86422 0.86885 0.91631 0.91447 0.91469 0.94959 0.95639 0.77601 0.93417 0.87353 0.89000 0.88961 0.88675 0.88130 0.88640 0.89592 0.89146 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 10.42 36.01 0.38 -0.45 16 2 C -0.01 -0.11 7.10 -82.72 -0.59 -0.70 16 3 C -0.07 -0.93 11.55 -16.84 -0.19 -1.12 16 4 N -0.46 -6.75 3.14 -113.77 -0.36 -7.11 16 5 C 0.23 4.26 7.65 -155.06 -1.19 3.08 16 6 N -0.47 -9.66 11.24 -6.84 -0.08 -9.74 16 7 C -0.04 -0.66 3.83 -27.51 -0.11 -0.76 16 8 C -0.11 -1.67 1.68 -91.49 -0.15 -1.83 16 9 H 0.09 1.20 7.22 -51.93 -0.38 0.83 16 10 C 0.53 9.07 6.87 -10.99 -0.08 8.99 16 11 O -0.54 -10.65 15.57 5.57 0.09 -10.56 16 12 N -0.59 -9.55 2.21 -173.93 -0.38 -9.94 16 13 C 0.09 1.40 9.36 59.85 0.56 1.96 16 14 C 0.15 2.26 1.74 -67.93 -0.12 2.14 16 15 H 0.09 1.43 4.04 -51.92 -0.21 1.22 16 16 C 0.14 2.69 5.18 -4.04 -0.02 2.67 16 17 N -0.73 -17.60 4.83 -59.91 -0.29 -17.89 16 18 C -0.25 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 20 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 21 N -0.92 -27.68 13.06 55.49 0.72 -26.95 16 22 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C -0.16 -1.91 5.14 -90.62 -0.47 -2.37 16 27 C -0.18 -1.83 10.18 -26.69 -0.27 -2.10 16 28 C -0.17 -1.78 9.80 -26.69 -0.26 -2.04 16 29 C -0.11 -1.45 4.61 -26.52 -0.12 -1.58 16 30 C 0.11 1.14 6.98 -3.92 -0.03 1.11 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.12 2.40 4.33 -51.93 -0.22 2.17 16 36 H 0.11 2.55 7.66 -51.93 -0.40 2.16 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 0.87 6.68 -51.93 -0.35 0.52 16 39 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 40 H 0.03 0.61 7.48 -51.93 -0.39 0.22 16 41 H 0.03 0.49 7.67 -51.93 -0.40 0.09 16 42 H 0.39 9.55 4.02 -40.82 -0.16 9.39 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.11 1.23 6.93 -51.93 -0.36 0.87 16 45 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.10 1.13 7.66 -51.93 -0.40 0.74 16 49 H 0.10 1.07 7.92 -51.93 -0.41 0.66 16 50 H 0.09 1.26 8.12 -51.93 -0.42 0.84 16 51 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -34.57 403.11 -10.40 -44.97 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -8.25 Total: 13.62 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.90 Total: -0.16 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -0.38 Total: -71.63 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.57 -10.40 -44.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676227449.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.161 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds