Wall clock time and date at job start Wed Apr 1 2020 04:08:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.34855 * 125.96468 * 2 1
4 4 N 1.36130 * 106.74899 * 180.02562 * 3 2 1
5 5 C 1.35614 * 107.39334 * 359.90016 * 4 3 2
6 6 N 1.30090 * 108.57193 * 0.07579 * 5 4 3
7 7 C 1.51043 * 124.03371 * 179.97438 * 5 4 3
8 8 C 1.53399 * 108.21383 * 344.17239 * 7 5 4
9 9 H 1.08999 * 109.50847 * 288.89600 * 8 7 5
10 10 C 1.50700 * 109.55057 * 168.77316 * 8 7 5
11 11 O 1.21271 * 120.00207 * 247.67329 * 10 8 7
12 12 N 1.34775 * 119.99669 * 67.67077 * 10 8 7
13 13 C 1.46499 * 119.99806 * 184.54762 * 12 10 8
14 14 C 1.46501 * 120.00497 * 4.54680 * 12 10 8
15 15 H 1.09007 * 109.46799 * 356.08504 * 14 12 10
16 16 C 1.52998 * 109.47242 * 236.08526 * 14 12 10
17 17 N 1.46505 * 109.47194 * 54.99994 * 16 14 12
18 18 C 1.36931 * 119.99791 * 180.02562 * 17 16 14
19 19 H 1.08003 * 120.00155 * 0.02562 * 18 17 16
20 20 C 1.38811 * 120.00153 * 179.97438 * 18 17 16
21 21 N 1.31621 * 119.99488 * 359.97438 * 20 18 17
22 22 Si 1.86794 * 120.00520 * 180.02562 * 20 18 17
23 23 H 1.48497 * 109.47314 * 59.99465 * 22 20 18
24 24 H 1.48496 * 109.47543 * 180.02562 * 22 20 18
25 25 H 1.48504 * 109.46896 * 299.99918 * 22 20 18
26 26 C 1.53001 * 109.47242 * 116.07840 * 14 12 10
27 27 C 1.52996 * 117.50111 * 248.75135 * 26 14 12
28 28 C 1.52998 * 117.49784 * 180.08525 * 26 14 12
29 29 C 1.53153 * 109.23678 * 48.82052 * 8 7 5
30 30 C 1.46471 * 127.92708 * 180.27538 * 4 3 2
31 31 H 1.08999 * 109.46786 * 270.00115 * 1 2 3
32 32 H 1.09007 * 109.47021 * 29.99714 * 1 2 3
33 33 H 1.08994 * 109.47251 * 149.99660 * 1 2 3
34 34 H 1.07998 * 126.65363 * 359.95736 * 3 2 1
35 35 H 1.08999 * 109.71426 * 224.49508 * 7 5 4
36 36 H 1.09002 * 109.75361 * 103.87801 * 7 5 4
37 37 H 1.08994 * 109.47492 * 84.59921 * 13 12 10
38 38 H 1.09005 * 109.46890 * 204.59764 * 13 12 10
39 39 H 1.08999 * 109.46959 * 324.59104 * 13 12 10
40 40 H 1.09005 * 109.46841 * 174.99688 * 16 14 12
41 41 H 1.08993 * 109.47077 * 294.99507 * 16 14 12
42 42 H 0.97001 * 119.99677 * 359.97438 * 17 16 14
43 43 H 0.97004 * 120.00172 * 180.02562 * 21 20 18
44 44 H 1.09002 * 115.54663 * 34.42821 * 26 14 12
45 45 H 1.08995 * 117.49918 * 359.97438 * 27 26 14
46 46 H 1.09000 * 117.50242 * 145.02599 * 27 26 14
47 47 H 1.08995 * 117.50421 * 214.98321 * 28 26 14
48 48 H 1.09000 * 117.50070 * 359.97438 * 28 26 14
49 49 H 1.08997 * 109.46627 * 170.50619 * 29 8 7
50 50 H 1.09005 * 109.46086 * 50.52118 * 29 8 7
51 51 H 1.08998 * 109.57962 * 42.79013 * 30 4 3
52 52 H 1.08994 * 109.58372 * 282.51357 * 30 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2990 1.0915 0.0000
4 7 3.5845 0.6434 -0.0006
5 6 3.5413 -0.7120 0.0013
6 7 2.2956 -1.0869 0.0014
7 6 4.7655 -1.5967 0.0009
8 6 5.9747 -0.7419 -0.3994
9 1 5.9075 -0.4890 -1.4575
10 6 7.2440 -1.5138 -0.1460
11 8 8.0103 -1.1527 0.7217
12 7 7.5274 -2.6055 -0.8838
13 6 8.7095 -3.4130 -0.5728
14 6 6.6535 -2.9847 -1.9968
15 1 5.7962 -2.3123 -2.0308
16 6 6.1672 -4.4214 -1.7967
17 7 5.5274 -4.5422 -0.4843
18 6 5.0122 -5.7454 -0.0819
19 1 5.0779 -6.6055 -0.7319
20 6 4.4065 -5.8601 1.1618
21 7 4.3279 -4.8123 1.9545
22 14 3.7044 -7.5016 1.7111
23 1 4.7874 -8.5170 1.7445
24 1 3.1162 -7.3596 3.0672
25 1 2.6506 -7.9330 0.7578
26 6 7.4303 -2.8874 -3.3113
27 6 7.0265 -1.7835 -4.2906
28 6 6.6861 -3.2437 -4.5997
29 6 5.9824 0.5430 0.4340
30 6 4.8148 1.4381 0.0047
31 1 -0.3633 0.0000 1.0277
32 1 -0.3633 0.8901 -0.5138
33 1 -0.3633 -0.8899 -0.5139
34 1 1.9764 2.1221 -0.0006
35 1 4.6338 -2.4063 -0.7170
36 1 4.9213 -2.0106 0.9971
37 1 8.4647 -4.1281 0.2125
38 1 9.0283 -3.9497 -1.4664
39 1 9.5152 -2.7620 -0.2332
40 1 5.4479 -4.6734 -2.5761
41 1 7.0158 -5.1032 -1.8514
42 1 5.4695 -3.7700 0.0999
43 1 3.9050 -4.8924 2.8238
44 1 8.4875 -3.1464 -3.2528
45 1 6.2070 -1.1268 -3.9986
46 1 7.8178 -1.3164 -4.8768
47 1 7.2537 -3.7365 -5.3890
48 1 5.6431 -3.5478 -4.5108
49 1 6.9224 1.0719 0.2773
50 1 5.8785 0.2918 1.4896
51 1 4.7119 2.2660 0.7062
52 1 5.0022 1.8280 -0.9957
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001676227449.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:08:04
Heat of formation + Delta-G solvation = 51.339698 kcal
Electronic energy + Delta-G solvation = -32906.038185 eV
Core-core repulsion = 28907.136323 eV
Total energy + Delta-G solvation = -3998.901862 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-43.31835 -41.50400 -39.07699 -37.40059 -36.65144 -35.55009 -34.36862 -33.01794
-32.42698 -30.24223 -29.73245 -28.72205 -27.39106 -25.99645 -25.05026 -23.84135
-23.59144 -22.85456 -21.68962 -21.23136 -20.23918 -20.04941 -19.03826 -18.47859
-17.78313 -17.19858 -16.80348 -16.57550 -16.52114 -15.97722 -15.63053 -15.42771
-15.25857 -15.02156 -14.92790 -14.80619 -14.56425 -14.52541 -13.92273 -13.83680
-13.69883 -13.33995 -13.16883 -13.09886 -12.98011 -12.91007 -12.80407 -12.70223
-12.59685 -12.40797 -12.28439 -12.23081 -12.12576 -12.03966 -11.70738 -11.27592
-11.06718 -10.90695 -10.79913 -10.69633 -10.43457 -9.66304 -9.06968 -8.93787
-7.89965 -5.17717 1.11341 1.44490 1.45654 1.47902 1.53445 1.87597
1.95977 2.15851 2.56342 2.89522 3.13486 3.37460 3.44508 3.50215
3.53406 3.59433 3.88359 3.94407 4.00279 4.08957 4.10470 4.13298
4.25715 4.31556 4.37312 4.39376 4.42986 4.48538 4.52659 4.55518
4.64694 4.68352 4.79294 4.83888 4.89224 4.91017 4.91908 4.96247
5.04764 5.05513 5.08249 5.09392 5.19864 5.29034 5.33675 5.41395
5.48545 5.54270 5.95124 6.28589 6.30792 6.33471 7.06237 7.29316
7.38877 8.14807 8.38404 9.31381
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.006798 B = 0.005589 C = 0.003913
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4117.813435 B = 5008.241617 C = 7154.820939
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 C -0.047 4.047
3 C -0.037 4.037
4 N -0.452 5.452
5 C 0.196 3.804
6 N -0.527 5.527
7 C -0.016 4.016
8 C -0.101 4.101
9 H 0.124 0.876
10 C 0.520 3.480
11 O -0.573 6.573
12 N -0.591 5.591
13 C 0.092 3.908
14 C 0.160 3.840
15 H 0.091 0.909
16 C 0.140 3.860
17 N -0.745 5.745
18 C -0.245 4.245
19 H 0.074 0.926
20 C -0.069 4.069
21 N -0.956 5.956
22 Si 0.966 3.034
23 H -0.278 1.278
24 H -0.301 1.301
25 H -0.280 1.280
26 C -0.172 4.172
27 C -0.164 4.164
28 C -0.167 4.167
29 C -0.111 4.111
30 C 0.106 3.894
31 H 0.065 0.935
32 H 0.100 0.900
33 H 0.051 0.949
34 H 0.220 0.780
35 H 0.093 0.907
36 H 0.057 0.943
37 H 0.029 0.971
38 H 0.096 0.904
39 H 0.073 0.927
40 H 0.036 0.964
41 H 0.029 0.971
42 H 0.382 0.618
43 H 0.245 0.755
44 H 0.119 0.881
45 H 0.093 0.907
46 H 0.114 0.886
47 H 0.114 0.886
48 H 0.089 0.911
49 H 0.118 0.882
50 H 0.056 0.944
51 H 0.123 0.877
52 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.603 16.925 -13.238 21.788
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.176 4.176
3 C -0.170 4.170
4 N -0.135 5.135
5 C -0.066 4.066
6 N -0.247 5.247
7 C -0.056 4.056
8 C -0.123 4.123
9 H 0.142 0.858
10 C 0.309 3.691
11 O -0.453 6.453
12 N -0.321 5.321
13 C -0.050 4.050
14 C 0.057 3.943
15 H 0.109 0.891
16 C 0.013 3.987
17 N -0.391 5.391
18 C -0.377 4.377
19 H 0.092 0.908
20 C -0.262 4.262
21 N -0.606 5.606
22 Si 0.795 3.205
23 H -0.204 1.204
24 H -0.227 1.227
25 H -0.206 1.206
26 C -0.192 4.192
27 C -0.200 4.200
28 C -0.204 4.204
29 C -0.149 4.149
30 C -0.015 4.015
31 H 0.084 0.916
32 H 0.118 0.882
33 H 0.070 0.930
34 H 0.236 0.764
35 H 0.111 0.889
36 H 0.076 0.924
37 H 0.048 0.952
38 H 0.115 0.885
39 H 0.092 0.908
40 H 0.054 0.946
41 H 0.047 0.953
42 H 0.218 0.782
43 H 0.054 0.946
44 H 0.137 0.863
45 H 0.112 0.888
46 H 0.132 0.868
47 H 0.132 0.868
48 H 0.107 0.893
49 H 0.136 0.864
50 H 0.075 0.925
51 H 0.141 0.859
52 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 3.845 16.225 -12.798 21.019
hybrid contribution -0.340 -0.728 1.275 1.508
sum 3.504 15.496 -11.523 19.626
Atomic orbital electron populations
1.20032 0.86263 1.03101 1.02263 1.21484 0.97996 0.88485 1.09653
1.22823 0.82063 1.01332 1.10803 1.45633 1.07897 1.06360 1.53650
1.22925 0.94062 0.82700 1.06927 1.69976 1.01370 1.32697 1.20637
1.20103 0.87251 0.95267 1.02938 1.21422 0.90970 0.96161 1.03712
0.85849 1.20628 0.87204 0.80717 0.80567 1.90631 1.51424 1.69351
1.33864 1.47715 1.26914 1.25918 1.31518 1.21551 0.87032 0.94885
1.01571 1.21139 0.91893 0.96401 0.84914 0.89104 1.21160 0.95424
0.94380 0.87778 1.42767 1.69238 1.10485 1.16624 1.19490 1.29167
0.89799 0.99244 0.90760 1.25462 1.02904 1.00194 0.97635 1.69802
1.50419 1.30153 1.10252 0.85333 0.78330 0.80180 0.76623 1.20367
1.22749 1.20618 1.22448 1.00340 1.07217 0.89182 1.23124 1.03684
0.91505 1.01731 1.23023 1.01266 0.98620 0.97500 1.21708 0.99944
0.93840 0.99401 1.22321 0.79551 0.93729 1.05872 0.91615 0.88183
0.93027 0.76390 0.88919 0.92445 0.95222 0.88537 0.90816 0.94598
0.95335 0.78164 0.94601 0.86345 0.88822 0.86755 0.86772 0.89297
0.86421 0.92535 0.85857 0.86249
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.48 10.42 71.24 0.74 -0.74 16
2 C -0.05 -1.55 7.10 41.41 0.29 -1.26 16
3 C -0.04 -0.91 11.55 83.25 0.96 0.05 16
4 N -0.45 -12.31 3.14 -513.85 -1.61 -13.92 16
5 C 0.20 7.48 7.65 138.17 1.06 8.54 16
6 N -0.53 -22.66 11.24 -175.55 -1.97 -24.64 16
7 C -0.02 -0.64 3.83 30.09 0.12 -0.52 16
8 C -0.10 -2.99 1.68 -11.35 -0.02 -3.01 16
9 H 0.12 2.91 7.22 -2.39 -0.02 2.89 16
10 C 0.52 18.21 6.87 87.66 0.60 18.82 16
11 O -0.57 -23.07 15.57 -3.00 -0.05 -23.12 16
12 N -0.59 -19.36 2.21 -822.60 -1.81 -21.18 16
13 C 0.09 2.90 9.36 127.77 1.20 4.09 16
14 C 0.16 4.79 1.74 44.99 0.08 4.87 16
15 H 0.09 2.79 4.04 -2.38 -0.01 2.78 16
16 C 0.14 5.35 5.18 86.38 0.45 5.80 16
17 N -0.74 -37.60 4.83 -343.45 -1.66 -39.26 16
18 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16
19 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16
20 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16
21 N -0.96 -60.92 13.06 21.65 0.28 -60.64 16
22 Si 0.97 48.41 29.55 68.60 2.03 50.44 16
23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16
24 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16
25 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16
26 C -0.17 -3.70 5.14 -10.80 -0.06 -3.76 16
27 C -0.16 -2.73 10.18 30.62 0.31 -2.41 16
28 C -0.17 -3.09 9.80 30.62 0.30 -2.79 16
29 C -0.11 -2.67 4.61 30.73 0.14 -2.53 16
30 C 0.11 1.85 6.98 86.47 0.60 2.45 16
31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
32 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16
33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16
34 H 0.22 3.07 8.06 -2.91 -0.02 3.05 16
35 H 0.09 4.06 4.33 -2.39 -0.01 4.05 16
36 H 0.06 2.88 7.66 -2.39 -0.02 2.86 16
37 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16
38 H 0.10 2.41 6.68 -2.38 -0.02 2.39 16
39 H 0.07 2.21 7.53 -2.39 -0.02 2.19 16
40 H 0.04 1.37 7.48 -2.38 -0.02 1.35 16
41 H 0.03 1.09 7.67 -2.39 -0.02 1.07 16
42 H 0.38 20.16 4.02 -92.71 -0.37 19.79 16
43 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16
44 H 0.12 2.34 6.93 -2.39 -0.02 2.33 16
45 H 0.09 1.56 8.05 -2.39 -0.02 1.54 16
46 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16
47 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16
48 H 0.09 1.87 7.66 -2.39 -0.02 1.85 16
49 H 0.12 2.34 7.92 -2.39 -0.02 2.32 16
50 H 0.06 1.70 8.12 -2.38 -0.02 1.68 16
51 H 0.12 1.46 8.14 -2.39 -0.02 1.45 16
52 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16
Total: -1.00 -82.86 403.11 3.85 -79.01
By element:
Atomic # 1 Polarization: 41.85 SS G_CDS: 0.56 Total: 42.40 kcal
Atomic # 6 Polarization: 2.82 SS G_CDS: 8.08 Total: 10.90 kcal
Atomic # 7 Polarization: -152.86 SS G_CDS: -6.78 Total: -159.64 kcal
Atomic # 8 Polarization: -23.07 SS G_CDS: -0.05 Total: -23.12 kcal
Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal
Total: -82.86 3.85 -79.01 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001676227449.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 130.354 kcal
(2) G-P(sol) polarization free energy of solvation -82.859 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.494 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.014 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.340 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds