Wall clock time and date at job start Wed Apr 1 2020 04:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38222 * 120.42199 * 2 1 4 4 N 1.31856 * 120.77192 * 179.97438 * 3 2 1 5 5 C 1.31891 * 121.71882 * 0.02562 * 4 3 2 6 6 C 1.38181 * 120.76781 * 0.02562 * 5 4 3 7 7 C 1.38628 * 120.41979 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.79059 * 0.04632 * 7 2 1 9 9 C 1.50697 * 109.47084 * 84.97590 * 8 7 2 10 10 O 1.21287 * 120.00006 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00349 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00542 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47195 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46968 * 180.02562 * 13 12 11 15 15 N 1.46902 * 109.47123 * 179.97438 * 14 13 12 16 16 C 1.46900 * 110.99672 * 294.29834 * 15 14 13 17 17 C 1.53239 * 109.33883 * 172.74442 * 16 15 14 18 18 N 1.47081 * 108.51916 * 53.83175 * 17 16 15 19 19 C 1.36938 * 120.88383 * 128.83702 * 18 17 16 20 20 H 1.08004 * 119.99710 * 333.48808 * 19 18 17 21 21 C 1.38812 * 120.00301 * 153.48726 * 19 18 17 22 22 N 1.31614 * 119.99766 * 159.44093 * 21 19 18 23 23 Si 1.86794 * 120.00135 * 339.44343 * 21 19 18 24 24 H 1.48496 * 109.47380 * 91.97092 * 23 21 19 25 25 H 1.48496 * 109.47409 * 211.97809 * 23 21 19 26 26 H 1.48512 * 109.46889 * 331.97790 * 23 21 19 27 27 C 1.47080 * 118.23975 * 308.81656 * 18 17 16 28 28 C 1.46901 * 110.99817 * 169.99922 * 15 14 13 29 29 H 1.08996 * 109.47224 * 270.02230 * 1 2 3 30 30 H 1.09000 * 109.47040 * 30.02784 * 1 2 3 31 31 H 1.09004 * 109.46773 * 150.02187 * 1 2 3 32 32 H 1.08003 * 119.61854 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.61647 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.41723 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46932 * 204.97505 * 8 7 2 36 36 H 1.08991 * 109.47021 * 324.97543 * 8 7 2 37 37 H 0.97002 * 119.99839 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.46747 * 300.00549 * 12 11 9 39 39 H 1.08995 * 109.46762 * 60.00005 * 12 11 9 40 40 H 1.09003 * 109.46731 * 299.99712 * 13 12 11 41 41 H 1.08999 * 109.47014 * 59.99954 * 13 12 11 42 42 H 1.09002 * 109.46758 * 299.99842 * 14 13 12 43 43 H 1.09008 * 109.47344 * 59.99442 * 14 13 12 44 44 H 1.08997 * 109.49724 * 292.70726 * 16 15 14 45 45 H 1.09000 * 109.49565 * 52.79041 * 16 15 14 46 46 H 1.08999 * 109.63269 * 294.12423 * 17 16 15 47 47 H 1.09000 * 109.62977 * 173.53884 * 17 16 15 48 48 H 0.97006 * 120.00070 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.62884 * 291.47521 * 27 18 17 50 50 H 1.08999 * 109.78986 * 170.98938 * 27 18 17 51 51 H 1.08994 * 109.49438 * 307.21143 * 28 15 14 52 52 H 1.08999 * 109.49367 * 67.29569 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.2000 0.0005 5 6 4.2256 0.0823 0.0005 6 6 3.5948 -1.1471 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4831 -2.5162 0.0001 9 6 1.1331 -2.8965 -1.4155 10 8 1.4430 -2.1672 -2.3337 11 7 0.4767 -4.0476 -1.6614 12 6 0.1370 -4.4177 -3.0375 13 6 -0.6000 -5.7586 -3.0380 14 6 -0.9542 -6.1453 -4.4752 15 7 -1.6613 -7.4330 -4.4758 16 6 -0.7804 -8.5173 -4.0215 17 6 -1.5988 -9.8032 -3.8630 18 7 -2.3070 -10.0647 -5.1253 19 6 -2.2286 -11.2886 -5.7347 20 1 -1.3648 -11.9169 -5.5750 21 6 -3.2593 -11.7215 -6.5575 22 7 -3.0391 -12.6675 -7.4457 23 14 -4.9587 -10.9614 -6.4043 24 1 -5.0768 -9.8190 -7.3456 25 1 -5.9881 -11.9806 -6.7312 26 1 -5.1624 -10.4804 -5.0141 27 6 -3.1019 -8.9772 -5.7155 28 6 -2.2244 -7.7238 -5.8010 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6675 2.1276 -0.0004 33 1 5.3047 0.1285 0.0005 34 1 4.1738 -2.0588 -0.0009 35 1 2.1243 -3.2832 0.4345 36 1 0.5703 -2.4293 0.5892 37 1 0.2292 -4.6312 -0.9271 38 1 -0.5042 -3.6508 -3.4722 39 1 1.0501 -4.5044 -3.6264 40 1 0.0410 -6.5255 -2.6032 41 1 -1.5131 -5.6714 -2.4492 42 1 -1.5950 -5.3784 -4.9104 43 1 -0.0408 -6.2325 -5.0638 44 1 0.0089 -8.6767 -4.7560 45 1 -0.3368 -8.2482 -3.0629 46 1 -2.3215 -9.6802 -3.0564 47 1 -0.9324 -10.6358 -3.6377 48 1 -3.7595 -12.9704 -8.0205 49 1 -3.9692 -8.7747 -5.0869 50 1 -3.4323 -9.2617 -6.7145 51 1 -2.8280 -6.8791 -6.1330 52 1 -1.4150 -7.8942 -6.5108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690057424.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:16 Heat of formation + Delta-G solvation = -0.564385 kcal Electronic energy + Delta-G solvation = -29363.482827 eV Core-core repulsion = 25362.330236 eV Total energy + Delta-G solvation = -4001.152591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.56320 -40.40463 -39.91048 -37.18349 -35.87082 -35.31293 -33.84574 -33.36571 -32.41668 -31.89189 -29.95949 -28.53298 -27.93172 -25.79226 -25.02275 -24.03562 -23.63322 -22.73542 -22.33451 -21.29187 -20.91586 -18.83379 -18.08367 -17.78383 -17.73534 -17.36817 -16.80888 -16.65638 -16.08441 -15.98558 -15.96784 -15.77539 -15.54365 -15.41957 -15.21344 -14.76595 -14.51859 -14.33484 -14.28634 -13.99021 -13.79375 -13.66224 -13.60112 -13.43137 -13.11360 -12.97066 -12.86632 -12.65916 -12.50735 -12.27520 -12.24341 -12.18011 -11.88844 -11.61640 -11.58741 -11.37935 -11.12935 -10.72184 -10.41768 -10.40567 -10.09978 -9.80663 -9.37182 -8.89713 -8.17458 -5.48832 0.20692 0.25816 1.29942 1.41843 1.51558 1.62078 2.17153 2.41355 2.84449 2.93673 3.07440 3.37081 3.49687 3.61734 3.80636 3.91832 3.94646 4.02119 4.05667 4.08080 4.16531 4.22769 4.28089 4.40138 4.44063 4.50626 4.51519 4.56182 4.56814 4.61218 4.64786 4.74104 4.76312 4.77546 4.80748 4.83645 4.90439 4.99261 5.02533 5.06946 5.18709 5.19258 5.25816 5.31730 5.38467 5.45469 5.81558 5.82200 6.07817 6.10678 6.22600 6.56124 6.89543 7.03974 7.25888 7.60836 8.03238 9.02384 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.034104 B = 0.001514 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.822931 B =18492.175533 C =18798.160261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.130 4.130 3 C 0.078 3.922 4 N -0.514 5.514 5 C 0.073 3.927 6 C -0.163 4.163 7 C -0.038 4.038 8 C -0.100 4.100 9 C 0.514 3.486 10 O -0.582 6.582 11 N -0.716 5.716 12 C 0.127 3.873 13 C -0.111 4.111 14 C 0.057 3.943 15 N -0.536 5.536 16 C 0.050 3.950 17 C 0.145 3.855 18 N -0.624 5.624 19 C -0.250 4.250 20 H 0.052 0.948 21 C -0.037 4.037 22 N -0.958 5.958 23 Si 0.950 3.050 24 H -0.273 1.273 25 H -0.311 1.311 26 H -0.262 1.262 27 C 0.124 3.876 28 C 0.052 3.948 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.155 0.845 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.419 0.581 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.028 0.972 44 H 0.016 0.984 45 H 0.107 0.893 46 H 0.040 0.960 47 H 0.060 0.940 48 H 0.261 0.739 49 H 0.037 0.963 50 H 0.051 0.949 51 H 0.093 0.907 52 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.573 25.940 20.955 34.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.132 4.132 3 C -0.078 4.078 4 N -0.223 5.223 5 C -0.083 4.083 6 C -0.182 4.182 7 C -0.046 4.046 8 C -0.139 4.139 9 C 0.301 3.699 10 O -0.462 6.462 11 N -0.369 5.369 12 C 0.003 3.997 13 C -0.149 4.149 14 C -0.071 4.071 15 N -0.260 5.260 16 C -0.079 4.079 17 C 0.020 3.980 18 N -0.349 5.349 19 C -0.380 4.380 20 H 0.069 0.931 21 C -0.231 4.231 22 N -0.604 5.604 23 Si 0.779 3.221 24 H -0.200 1.200 25 H -0.240 1.240 26 H -0.187 1.187 27 C -0.001 4.001 28 C -0.077 4.077 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.185 0.815 33 H 0.189 0.811 34 H 0.172 0.828 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.256 0.744 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.047 0.953 44 H 0.034 0.966 45 H 0.125 0.875 46 H 0.058 0.942 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.055 0.945 50 H 0.069 0.931 51 H 0.111 0.889 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 8.797 27.174 20.527 35.173 hybrid contribution -0.519 -1.399 -1.045 1.822 sum 8.278 25.775 19.482 33.353 Atomic orbital electron populations 1.20782 0.88821 1.03412 1.03633 1.21042 0.98709 0.93553 0.99885 1.22967 0.89882 0.98492 0.96505 1.67636 1.09233 1.32621 1.12840 1.23080 1.01345 0.87734 0.96099 1.22306 0.94759 1.00384 1.00767 1.19896 0.93887 0.94730 0.96133 1.20776 1.04164 0.95255 0.93684 1.20879 0.76889 0.80615 0.91528 1.90754 1.54849 1.52618 1.47990 1.45879 1.58421 1.22681 1.09882 1.21150 0.99042 0.96378 0.83158 1.21631 1.01351 0.95315 0.96632 1.22044 0.96920 0.90864 0.97298 1.61915 1.35702 1.02689 1.25731 1.22564 0.93480 0.91368 1.00524 1.21215 0.94491 0.95530 0.86766 1.44557 1.57956 1.08605 1.23829 1.18885 1.01319 0.94624 1.23146 0.93051 1.25897 1.01522 0.97845 0.97859 1.69970 1.33398 1.34454 1.22592 0.85875 0.80739 0.76576 0.78934 1.19964 1.23979 1.18677 1.21449 0.93933 0.87991 0.96693 1.22436 0.97791 0.97902 0.89609 0.88631 0.90677 0.91860 0.81543 0.81087 0.82772 0.84518 0.84682 0.74352 0.92199 0.92854 0.90221 0.89404 0.89971 0.95335 0.96560 0.87491 0.94226 0.92199 0.92968 0.94538 0.93080 0.88884 0.96141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.30 71.23 0.66 -0.41 16 2 C -0.13 -1.94 5.90 -19.78 -0.12 -2.06 16 3 C 0.08 1.35 10.86 84.69 0.92 2.27 16 4 N -0.51 -10.50 10.36 -195.84 -2.03 -12.53 16 5 C 0.07 1.21 11.18 84.67 0.95 2.16 16 6 C -0.16 -2.29 9.80 22.36 0.22 -2.07 16 7 C -0.04 -0.53 4.41 -19.67 -0.09 -0.62 16 8 C -0.10 -0.76 5.19 29.10 0.15 -0.61 16 9 C 0.51 7.58 7.15 87.66 0.63 8.21 16 10 O -0.58 -14.80 16.03 -3.05 -0.05 -14.85 16 11 N -0.72 -7.58 5.56 -463.06 -2.57 -10.15 16 12 C 0.13 1.84 5.67 86.38 0.49 2.33 16 13 C -0.11 -1.53 5.26 30.60 0.16 -1.37 16 14 C 0.06 1.15 4.96 86.30 0.43 1.58 16 15 N -0.54 -14.86 4.63 -895.25 -4.14 -19.00 16 16 C 0.05 1.43 5.46 86.38 0.47 1.91 16 17 C 0.14 5.36 6.69 86.35 0.58 5.94 16 18 N -0.62 -29.27 2.82 -698.11 -1.97 -31.24 16 19 C -0.25 -14.24 10.08 84.03 0.85 -13.40 16 20 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 21 C -0.04 -2.15 5.24 84.86 0.44 -1.70 16 22 N -0.96 -60.39 13.97 21.65 0.30 -60.08 16 23 Si 0.95 46.60 24.31 68.60 1.67 48.27 16 24 H -0.27 -12.57 6.58 99.48 0.65 -11.91 16 25 H -0.31 -15.49 7.11 99.48 0.71 -14.79 16 26 H -0.26 -12.38 6.61 99.48 0.66 -11.72 16 27 C 0.12 5.24 4.35 86.35 0.38 5.62 16 28 C 0.05 1.73 5.62 86.38 0.49 2.22 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 31 H 0.06 0.67 6.35 -2.38 -0.02 0.66 16 32 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.14 0.28 8.07 -2.39 -0.02 0.26 16 36 H 0.14 0.34 7.10 -2.39 -0.02 0.33 16 37 H 0.42 1.66 8.47 -92.71 -0.79 0.87 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.01 6.40 -2.39 -0.02 0.99 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.55 7.97 -2.39 -0.02 1.53 16 43 H 0.03 0.62 8.12 -2.38 -0.02 0.60 16 44 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.11 2.27 6.16 -2.39 -0.01 2.26 16 46 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.06 2.23 7.95 -2.39 -0.02 2.21 16 48 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 49 H 0.04 1.52 6.94 -2.38 -0.02 1.50 16 50 H 0.05 2.38 4.61 -2.39 -0.01 2.36 16 51 H 0.09 2.58 7.99 -2.39 -0.02 2.56 16 52 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -80.56 406.87 -1.16 -81.72 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.03 Total: 7.88 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 7.60 Total: 10.00 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -10.41 Total: -133.01 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.05 Total: -14.85 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.67 Total: 48.27 kcal Total: -80.56 -1.16 -81.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690057424.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.154 kcal (2) G-P(sol) polarization free energy of solvation -80.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds