Wall clock time and date at job start Wed Apr 1 2020 04:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34851 * 125.96187 * 2 1 4 4 N 1.36316 * 106.69061 * 180.02562 * 3 2 1 5 5 C 1.35421 * 107.39666 * 359.95460 * 4 3 2 6 6 N 1.30098 * 108.62739 * 0.06276 * 5 4 3 7 7 C 1.51042 * 123.98346 * 180.08393 * 5 4 3 8 8 C 1.53403 * 108.20795 * 15.95663 * 7 5 4 9 9 H 1.09003 * 109.50637 * 71.16258 * 8 7 5 10 10 C 1.50694 * 109.50518 * 191.25191 * 8 7 5 11 11 O 1.21286 * 119.99841 * 97.79811 * 10 8 7 12 12 N 1.34777 * 120.00619 * 277.79570 * 10 8 7 13 13 C 1.46931 * 120.62575 * 355.58786 * 12 10 8 14 14 C 1.53188 * 108.77542 * 233.63092 * 13 12 10 15 15 C 1.53042 * 109.31312 * 305.36540 * 14 13 12 16 16 C 1.53041 * 109.53755 * 61.36383 * 15 14 13 17 17 H 1.09000 * 109.49830 * 58.58838 * 16 15 14 18 18 C 1.53004 * 109.49811 * 178.65220 * 16 15 14 19 19 N 1.46496 * 109.47293 * 294.93982 * 18 16 15 20 20 C 1.36937 * 120.00217 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99698 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99900 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00399 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99704 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47196 * 60.00207 * 24 22 20 26 26 H 1.48499 * 109.46945 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47224 * 300.00070 * 24 22 20 28 28 C 1.46920 * 120.63481 * 175.60914 * 12 10 8 29 29 C 1.53145 * 109.28030 * 311.20859 * 8 7 5 30 30 C 1.46466 * 127.77749 * 179.90558 * 4 3 2 31 31 H 1.08995 * 109.47080 * 89.99862 * 1 2 3 32 32 H 1.09001 * 109.46643 * 210.00152 * 1 2 3 33 33 H 1.09003 * 109.46761 * 329.99847 * 1 2 3 34 34 H 1.08003 * 126.65394 * 0.02562 * 3 2 1 35 35 H 1.09006 * 109.71199 * 256.28363 * 7 5 4 36 36 H 1.08994 * 109.75260 * 135.66175 * 7 5 4 37 37 H 1.08995 * 109.58814 * 113.84332 * 13 12 10 38 38 H 1.09003 * 109.70330 * 353.48306 * 13 12 10 39 39 H 1.09001 * 109.50027 * 185.41531 * 14 13 12 40 40 H 1.09002 * 109.49993 * 65.31709 * 14 13 12 41 41 H 1.09004 * 109.46068 * 301.34730 * 15 14 13 42 42 H 1.09004 * 109.46372 * 181.38640 * 15 14 13 43 43 H 1.09001 * 109.47000 * 54.93394 * 18 16 15 44 44 H 1.09001 * 109.47212 * 174.93275 * 18 16 15 45 45 H 0.97009 * 120.00060 * 359.97438 * 19 18 16 46 46 H 0.96996 * 120.00198 * 179.97438 * 23 22 20 47 47 H 1.08994 * 109.58697 * 6.58348 * 28 12 10 48 48 H 1.09004 * 109.58654 * 246.15524 * 28 12 10 49 49 H 1.09001 * 109.46435 * 189.46392 * 29 8 7 50 50 H 1.08997 * 109.46993 * 309.44154 * 29 8 7 51 51 H 1.08999 * 109.59131 * 316.98509 * 30 4 3 52 52 H 1.09007 * 109.58164 * 77.26223 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5858 0.6416 -0.0006 5 6 3.5415 -0.7119 0.0001 6 7 2.2957 -1.0869 -0.0003 7 6 4.7656 -1.5967 0.0016 8 6 5.9745 -0.7417 0.4028 9 1 5.9069 -0.4896 1.4611 10 6 7.2434 -1.5142 0.1495 11 8 7.8752 -1.3255 -0.8685 12 7 7.6762 -2.4146 1.0541 13 6 6.9759 -2.5853 2.3345 14 6 7.9889 -2.4373 3.4740 15 6 9.1446 -3.4161 3.2543 16 6 9.8494 -3.0884 1.9359 17 1 10.2166 -2.0625 1.9650 18 6 11.0253 -4.0461 1.7336 19 7 12.0286 -3.8146 2.7755 20 6 13.1769 -4.5604 2.7983 21 1 13.3426 -5.3196 2.0482 22 6 14.1278 -4.3406 3.7853 23 7 13.9257 -3.4157 4.6997 24 14 15.6945 -5.3574 3.8158 25 1 16.4404 -5.1556 2.5477 26 1 16.5389 -4.9313 4.9606 27 1 15.3493 -6.7942 3.9638 28 6 8.8575 -3.2438 0.7789 29 6 5.9833 0.5437 -0.4297 30 6 4.8148 1.4383 -0.0027 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3632 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.9763 2.1222 0.0004 35 1 4.9219 -2.0098 -0.9950 36 1 4.6338 -2.4067 0.7189 37 1 6.5235 -3.5762 2.3742 38 1 6.2008 -1.8254 2.4336 39 1 7.5021 -2.6565 4.4243 40 1 8.3737 -1.4175 3.4886 41 1 8.7561 -4.4338 3.2151 42 1 9.8548 -3.3302 4.0768 43 1 10.6703 -5.0750 1.7933 44 1 11.4713 -3.8720 0.7544 45 1 11.8796 -3.1329 3.4495 46 1 14.5900 -3.2624 5.3896 47 1 9.3251 -2.9168 -0.1497 48 1 8.5584 -4.2884 0.6918 49 1 6.9232 1.0725 -0.2713 50 1 5.8809 0.2935 -1.4856 51 1 4.7125 2.2662 -0.7042 52 1 4.9991 1.8283 0.9984 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690409395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:21 Heat of formation + Delta-G solvation = 3.287645 kcal Electronic energy + Delta-G solvation = -30637.896178 eV Core-core repulsion = 26636.910623 eV Total energy + Delta-G solvation = -4000.985555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.34171 -41.47660 -39.11348 -37.32579 -36.63396 -34.71326 -34.04935 -32.96295 -32.47379 -31.69120 -29.97258 -28.38506 -27.20410 -26.51778 -25.08902 -24.67421 -23.56201 -23.06112 -21.52604 -21.10453 -20.19115 -19.76265 -19.20244 -18.29613 -17.76893 -17.20726 -16.80782 -16.49161 -16.38495 -15.78647 -15.57672 -15.41855 -15.18532 -15.08162 -14.99371 -14.92526 -14.64842 -14.55129 -14.07231 -13.89215 -13.75962 -13.58427 -13.42774 -13.27037 -13.14681 -12.84795 -12.77587 -12.75753 -12.61750 -12.30314 -12.20317 -12.18553 -12.02223 -11.89735 -11.71292 -11.55808 -11.37465 -10.92824 -10.92051 -10.76973 -10.46160 -9.67832 -9.12108 -9.00214 -7.95975 -5.24558 1.08696 1.46410 1.47247 1.49654 1.55736 1.83670 1.89573 2.08939 2.55705 3.09118 3.37194 3.39801 3.46313 3.53492 3.70727 3.76993 3.88379 3.95011 3.99876 4.06735 4.09982 4.22840 4.30055 4.34781 4.41247 4.42435 4.48857 4.51807 4.55643 4.60618 4.70995 4.72389 4.77773 4.80491 4.86600 4.88717 4.93005 4.96836 5.04766 5.05072 5.18622 5.19185 5.24124 5.39236 5.40502 5.44943 5.49418 5.51362 5.89704 6.23853 6.26093 6.36785 7.07100 7.16459 7.32774 8.08254 8.32338 9.27258 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.001872 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.456761 B =14956.342767 C =15147.480899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.037 4.037 3 C -0.046 4.046 4 N -0.455 5.455 5 C 0.197 3.803 6 N -0.523 5.523 7 C -0.013 4.013 8 C -0.101 4.101 9 H 0.124 0.876 10 C 0.521 3.479 11 O -0.579 6.579 12 N -0.603 5.603 13 C 0.103 3.897 14 C -0.128 4.128 15 C -0.108 4.108 16 C -0.092 4.092 17 H 0.052 0.948 18 C 0.157 3.843 19 N -0.741 5.741 20 C -0.249 4.249 21 H 0.074 0.926 22 C -0.074 4.074 23 N -0.968 5.968 24 Si 0.974 3.026 25 H -0.280 1.280 26 H -0.294 1.294 27 H -0.277 1.277 28 C 0.126 3.874 29 C -0.114 4.114 30 C 0.106 3.894 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.206 0.794 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.028 0.972 44 H 0.013 0.987 45 H 0.375 0.625 46 H 0.251 0.749 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.069 0.931 51 H 0.116 0.884 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.177 11.462 -7.100 31.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.165 4.165 3 C -0.179 4.179 4 N -0.137 5.137 5 C -0.066 4.066 6 N -0.244 5.244 7 C -0.052 4.052 8 C -0.122 4.122 9 H 0.142 0.858 10 C 0.310 3.690 11 O -0.458 6.458 12 N -0.334 5.334 13 C -0.018 4.018 14 C -0.166 4.166 15 C -0.146 4.146 16 C -0.112 4.112 17 H 0.071 0.929 18 C 0.030 3.970 19 N -0.384 5.384 20 C -0.380 4.380 21 H 0.092 0.908 22 C -0.266 4.266 23 N -0.619 5.619 24 Si 0.803 3.197 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.203 1.203 28 C 0.003 3.997 29 C -0.152 4.152 30 C -0.015 4.015 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.223 0.777 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.031 0.969 45 H 0.207 0.793 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.103 0.897 49 H 0.118 0.882 50 H 0.088 0.912 51 H 0.134 0.866 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -27.883 10.731 -7.697 30.852 hybrid contribution 1.708 0.396 0.312 1.781 sum -26.174 11.127 -7.384 29.384 Atomic orbital electron populations 1.20046 0.86267 1.03175 1.02473 1.21350 0.97784 0.88474 1.08940 1.22836 0.82353 1.01467 1.11252 1.45565 1.07525 1.07062 1.53570 1.23144 0.94437 0.82573 1.06445 1.69890 1.00764 1.32128 1.21572 1.19980 0.85483 0.95531 1.04245 1.21410 0.91110 0.95788 1.03901 0.85805 1.20768 0.86528 0.79156 0.82565 1.90705 1.59148 1.66867 1.29105 1.48197 1.28999 1.37863 1.18375 1.22106 0.94621 1.04426 0.80692 1.21903 0.95971 0.99388 0.99349 1.21465 0.97250 0.99959 0.95910 1.21465 0.94607 0.98832 0.96267 0.92925 1.20734 0.88685 0.96621 0.90919 1.42509 1.19254 1.43903 1.32755 1.19609 0.96148 1.12994 1.09284 0.90806 1.25555 1.02229 1.00857 0.98003 1.69802 1.36969 1.36907 1.18200 0.85208 0.79368 0.78376 0.76776 1.20612 1.22020 1.20276 1.21429 0.85361 0.95324 0.97566 1.21695 0.99030 0.94235 1.00286 1.22223 0.79945 0.93921 1.05389 0.91252 0.92217 0.89207 0.77673 0.89848 0.87157 0.89110 0.87174 0.88456 0.92216 0.91199 0.93608 0.95453 0.96912 0.79299 0.93980 0.90787 0.89736 0.88178 0.91207 0.86581 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.80 10.42 71.24 0.74 -0.05 16 2 C -0.04 -0.69 7.10 41.41 0.29 -0.40 16 3 C -0.05 -0.64 11.55 83.22 0.96 0.32 16 4 N -0.45 -6.64 3.13 -513.88 -1.61 -8.25 16 5 C 0.20 3.80 7.65 138.23 1.06 4.85 16 6 N -0.52 -12.38 11.24 -175.68 -1.98 -14.36 16 7 C -0.01 -0.21 5.59 30.09 0.17 -0.04 16 8 C -0.10 -1.47 1.71 -11.36 -0.02 -1.48 16 9 H 0.12 1.28 6.20 -2.39 -0.01 1.26 16 10 C 0.52 11.64 6.80 87.66 0.60 12.23 16 11 O -0.58 -17.88 15.64 -3.05 -0.05 -17.92 16 12 N -0.60 -12.84 2.97 -818.92 -2.43 -15.28 16 13 C 0.10 1.54 6.07 86.36 0.52 2.06 16 14 C -0.13 -2.45 6.08 30.67 0.19 -2.26 16 15 C -0.11 -3.01 5.06 30.62 0.15 -2.85 16 16 C -0.09 -2.91 2.37 -10.71 -0.03 -2.93 16 17 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 18 C 0.16 6.33 5.66 86.38 0.49 6.82 16 19 N -0.74 -37.97 5.32 -343.45 -1.83 -39.80 16 20 C -0.25 -14.06 9.99 84.03 0.84 -13.23 16 21 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 23 N -0.97 -59.29 13.06 21.65 0.28 -59.01 16 24 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 28 C 0.13 3.35 5.73 86.36 0.49 3.84 16 29 C -0.11 -1.49 4.60 30.72 0.14 -1.35 16 30 C 0.11 0.89 6.98 86.46 0.60 1.50 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.21 1.30 8.06 -2.91 -0.02 1.27 16 35 H 0.08 1.54 8.11 -2.38 -0.02 1.52 16 36 H 0.11 1.52 7.90 -2.39 -0.02 1.51 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.11 1.07 5.41 -2.39 -0.01 1.05 16 39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 1.59 7.16 -2.39 -0.02 1.58 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.37 20.28 6.85 -92.70 -0.64 19.65 16 46 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.07 2.26 7.00 -2.39 -0.02 2.25 16 48 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.10 1.30 8.12 -2.39 -0.02 1.28 16 50 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 51 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 52 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 Total: -1.00 -77.84 406.00 2.37 -75.47 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.28 Total: 27.53 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 7.67 Total: 3.20 kcal Atomic # 7 Polarization: -129.13 SS G_CDS: -7.56 Total: -136.69 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.05 Total: -17.92 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -77.84 2.37 -75.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690409395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.761 kcal (2) G-P(sol) polarization free energy of solvation -77.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds