Wall clock time and date at job start Wed Apr 1 2020 04:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34863 * 125.96245 * 2 1 4 4 N 1.36314 * 106.68746 * 180.02562 * 3 2 1 5 5 C 1.35426 * 107.39917 * 359.96192 * 4 3 2 6 6 N 1.30094 * 108.62648 * 0.05508 * 5 4 3 7 7 C 1.51034 * 123.98046 * 180.08919 * 5 4 3 8 8 C 1.53405 * 108.20581 * 15.99509 * 7 5 4 9 9 H 1.08998 * 109.55038 * 71.09670 * 8 7 5 10 10 C 1.50704 * 109.50854 * 191.22192 * 8 7 5 11 11 O 1.21282 * 119.99915 * 119.75994 * 10 8 7 12 12 N 1.34773 * 119.99964 * 299.75815 * 10 8 7 13 13 C 1.46499 * 119.99954 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.47317 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47511 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47306 * 179.97438 * 15 14 13 17 17 C 1.36929 * 119.99956 * 270.00237 * 16 15 14 18 18 H 1.08005 * 120.00489 * 140.53210 * 17 16 15 19 19 C 1.38813 * 120.00074 * 320.53337 * 17 16 15 20 20 N 1.31620 * 119.99945 * 340.28935 * 19 17 16 21 21 Si 1.86808 * 119.99988 * 160.28714 * 19 17 16 22 22 H 1.48493 * 109.46904 * 60.00250 * 21 19 17 23 23 H 1.48503 * 109.46886 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47197 * 300.00099 * 21 19 17 25 25 C 1.46503 * 119.99937 * 90.00130 * 16 15 14 26 26 C 1.52996 * 117.49983 * 183.28790 * 25 16 15 27 27 C 1.52996 * 60.00054 * 252.51184 * 26 25 16 28 28 C 1.53155 * 109.23398 * 311.14814 * 8 7 5 29 29 C 1.46464 * 127.77336 * 179.97438 * 4 3 2 30 30 H 1.09006 * 109.47349 * 269.97534 * 1 2 3 31 31 H 1.09003 * 109.47161 * 29.97710 * 1 2 3 32 32 H 1.09005 * 109.46958 * 149.97873 * 1 2 3 33 33 H 1.07992 * 126.65320 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.72037 * 256.31441 * 7 5 4 35 35 H 1.09006 * 109.71551 * 135.66258 * 7 5 4 36 36 H 0.97005 * 119.99774 * 359.97438 * 12 10 8 37 37 H 1.08992 * 109.47586 * 59.99218 * 13 12 10 38 38 H 1.09004 * 109.46680 * 299.98964 * 13 12 10 39 39 H 1.09006 * 109.47283 * 59.99100 * 14 13 12 40 40 H 1.09000 * 109.46938 * 299.99359 * 14 13 12 41 41 H 1.09000 * 109.47057 * 299.99972 * 15 14 13 42 42 H 1.09000 * 109.46619 * 59.99516 * 15 14 13 43 43 H 0.97002 * 119.99834 * 175.01184 * 20 19 17 44 44 H 1.09001 * 115.55087 * 328.99805 * 25 16 15 45 45 H 1.09004 * 117.49425 * 0.02562 * 26 25 16 46 46 H 1.08999 * 117.50061 * 145.02272 * 26 25 16 47 47 H 1.08995 * 117.50019 * 252.50969 * 27 26 25 48 48 H 1.09003 * 117.50366 * 107.48614 * 27 26 25 49 49 H 1.09000 * 109.46288 * 189.48868 * 28 8 7 50 50 H 1.08997 * 109.46398 * 309.47804 * 28 8 7 51 51 H 1.08999 * 109.58588 * 77.32844 * 29 4 3 52 52 H 1.09001 * 109.70161 * 316.98509 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0916 0.0000 4 7 3.5857 0.6416 -0.0006 5 6 3.5413 -0.7119 -0.0001 6 7 2.2956 -1.0869 -0.0004 7 6 4.7655 -1.5966 0.0015 8 6 5.9741 -0.7418 0.4039 9 1 5.9060 -0.4890 1.4619 10 6 7.2432 -1.5143 0.1515 11 8 8.0739 -1.0809 -0.6187 12 7 7.4551 -2.6867 0.7816 13 6 8.6891 -3.4373 0.5366 14 6 8.6794 -4.7205 1.3698 15 6 9.9679 -5.5048 1.1135 16 7 9.9589 -6.7332 1.9118 17 6 10.4826 -6.7314 3.1769 18 1 9.9922 -7.2833 3.9653 19 6 11.6438 -6.0201 3.4465 20 7 12.4487 -5.6772 2.4631 21 14 12.0640 -5.5495 5.2048 22 1 12.1968 -6.7784 6.0277 23 1 13.3462 -4.8006 5.2238 24 1 10.9834 -4.6960 5.7605 25 6 9.3895 -7.9635 1.3564 26 6 9.3396 -9.1924 2.2664 27 6 10.3423 -9.1354 1.1122 28 6 5.9831 0.5432 -0.4294 29 6 4.8147 1.4383 -0.0013 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.9763 2.1222 -0.0004 34 1 4.9223 -2.0092 -0.9951 35 1 4.6329 -2.4066 0.7189 36 1 6.7909 -3.0331 1.3978 37 1 9.5474 -2.8277 0.8189 38 1 8.7559 -3.6912 -0.5213 39 1 7.8210 -5.3303 1.0879 40 1 8.6128 -4.4663 2.4276 41 1 10.0342 -5.7590 0.0556 42 1 10.8264 -4.8951 1.3952 43 1 13.2216 -5.1189 2.6414 44 1 8.5701 -7.8256 0.6509 45 1 9.7300 -9.0853 3.2784 46 1 8.4872 -9.8633 2.1598 47 1 10.1496 -9.7687 0.2463 48 1 11.3928 -8.9910 1.3647 49 1 6.9228 1.0722 -0.2710 50 1 5.8809 0.2921 -1.4851 51 1 4.9993 1.8262 1.0004 52 1 4.7146 2.2677 -0.7015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707479998.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:50 Heat of formation + Delta-G solvation = 54.892792 kcal Electronic energy + Delta-G solvation = -29864.540280 eV Core-core repulsion = 25865.792493 eV Total energy + Delta-G solvation = -3998.747788 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.63552 -39.96984 -37.18404 -36.67215 -35.31952 -33.82695 -33.44199 -31.82087 -31.59381 -29.70927 -29.00638 -27.53260 -25.48427 -24.43054 -23.80015 -22.68316 -21.42828 -21.03388 -20.80343 -20.10686 -19.61726 -19.38332 -17.23232 -17.12018 -16.47274 -16.16900 -15.71944 -15.63419 -15.29457 -14.72568 -14.56971 -14.51396 -14.39614 -14.10579 -13.90740 -13.79981 -13.46696 -13.17044 -12.78948 -12.66635 -12.55140 -12.27953 -12.11815 -11.99902 -11.92265 -11.63841 -11.51755 -11.46139 -11.03041 -10.83321 -10.78119 -10.67492 -10.24200 -10.17198 -10.14554 -9.81782 -9.76869 -9.64581 -9.57988 -9.25931 -8.94459 -8.50145 -8.44565 -6.55646 -5.81485 -3.48757 1.75929 2.46103 2.53283 2.83202 3.11702 3.31919 3.38666 3.39615 3.87409 4.10038 4.19888 4.24402 4.40691 4.61764 4.71188 4.74261 4.80348 4.93964 4.96356 5.03480 5.08641 5.15648 5.29731 5.30088 5.36098 5.46584 5.48943 5.60424 5.62784 5.69121 5.72964 5.78168 5.91857 5.97258 6.05693 6.12178 6.26993 6.31816 6.35172 6.50445 6.54085 6.63892 6.65134 6.71731 6.89151 7.03666 7.07854 7.24414 7.52496 7.59319 7.76239 7.88018 8.18812 8.46699 9.12345 9.73209 10.32149 11.13088 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.002027 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.145236 B =13807.998674 C =14555.056469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.005 4.005 3 C -0.056 4.056 4 N -0.455 5.455 5 C 0.214 3.786 6 N -0.484 5.484 7 C -0.024 4.024 8 C -0.113 4.113 9 H 0.104 0.896 10 C 0.517 3.483 11 O -0.539 6.539 12 N -0.721 5.721 13 C 0.120 3.880 14 C -0.146 4.146 15 C 0.154 3.846 16 N -0.551 5.551 17 C -0.261 4.261 18 H 0.063 0.937 19 C 0.015 3.985 20 N -0.882 5.882 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.120 3.880 26 C -0.196 4.196 27 C -0.222 4.222 28 C -0.115 4.115 29 C 0.103 3.897 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.173 0.827 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.400 0.600 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.095 0.905 43 H 0.256 0.744 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.083 0.917 51 H 0.087 0.913 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.508 14.464 -5.140 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.189 4.189 4 N -0.139 5.139 5 C -0.049 4.049 6 N -0.203 5.203 7 C -0.063 4.063 8 C -0.135 4.135 9 H 0.122 0.878 10 C 0.302 3.698 11 O -0.416 6.416 12 N -0.372 5.372 13 C -0.003 4.003 14 C -0.187 4.187 15 C 0.028 3.972 16 N -0.267 5.267 17 C -0.391 4.391 18 H 0.080 0.920 19 C -0.186 4.186 20 N -0.523 5.523 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.012 3.988 26 C -0.234 4.234 27 C -0.263 4.263 28 C -0.153 4.153 29 C -0.019 4.019 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.190 0.810 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.234 0.766 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.113 0.887 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.110 0.890 49 H 0.121 0.879 50 H 0.101 0.899 51 H 0.105 0.895 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.811 14.129 -5.688 23.435 hybrid contribution 0.275 0.979 1.294 1.646 sum -17.536 15.107 -4.394 23.559 Atomic orbital electron populations 1.20002 0.87687 1.02518 1.02093 1.20811 0.96489 0.88293 1.07829 1.22297 0.82849 1.00371 1.13335 1.45381 1.06596 1.07434 1.54446 1.23061 0.94646 0.81553 1.05613 1.69955 0.99620 1.30424 1.20329 1.20129 0.86037 0.95507 1.04616 1.21459 0.93356 0.96060 1.02670 0.87758 1.20197 0.87536 0.81415 0.80662 1.90720 1.46388 1.68485 1.36056 1.46197 1.22875 1.21921 1.46178 1.21494 0.85402 0.93111 1.00312 1.22469 1.02210 0.94223 0.99783 1.20753 0.95364 0.88290 0.92822 1.43326 1.67279 1.02090 1.14046 1.18970 1.03130 1.31504 0.85458 0.91968 1.25256 0.94270 1.01948 0.97139 1.70050 1.13584 1.37311 1.31384 0.86495 0.77356 0.78593 0.85083 1.20636 1.21568 1.20836 1.21235 0.96500 0.83326 0.97787 1.23012 1.01053 1.02107 0.97252 1.23344 0.98162 1.06186 0.98565 1.21729 0.98092 0.94518 1.00992 1.22061 0.81929 0.94421 1.03464 0.91535 0.91509 0.91223 0.80965 0.88578 0.87966 0.76563 0.91398 0.91788 0.93009 0.91514 0.95275 0.88721 0.93439 0.89672 0.88529 0.90862 0.91317 0.89010 0.87940 0.89855 0.89482 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.00 0.38 -0.12 16 2 C -0.01 -0.05 7.10 -82.72 -0.59 -0.64 16 3 C -0.06 -0.50 11.55 -16.76 -0.19 -0.69 16 4 N -0.46 -4.15 3.13 -113.75 -0.36 -4.51 16 5 C 0.21 2.35 7.65 -155.24 -1.19 1.17 16 6 N -0.48 -6.26 11.24 -6.88 -0.08 -6.34 16 7 C -0.02 -0.22 5.47 -27.51 -0.15 -0.37 16 8 C -0.11 -0.99 2.55 -91.48 -0.23 -1.22 16 9 H 0.10 0.79 8.12 -51.93 -0.42 0.36 16 10 C 0.52 6.35 7.13 -10.99 -0.08 6.28 16 11 O -0.54 -8.67 15.83 5.56 0.09 -8.59 16 12 N -0.72 -8.80 5.46 -60.30 -0.33 -9.13 16 13 C 0.12 1.83 5.67 -4.04 -0.02 1.81 16 14 C -0.15 -2.51 5.65 -26.73 -0.15 -2.66 16 15 C 0.15 3.33 5.33 -4.04 -0.02 3.31 16 16 N -0.55 -12.95 2.75 -165.66 -0.46 -13.41 16 17 C -0.26 -6.74 8.47 -15.06 -0.13 -6.86 16 18 H 0.06 1.62 6.75 -52.48 -0.35 1.27 16 19 C 0.01 0.40 4.98 -17.43 -0.09 0.31 16 20 N -0.88 -24.43 11.50 55.49 0.64 -23.79 16 21 Si 0.90 20.83 29.60 -169.99 -5.03 15.80 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.12 2.51 6.56 -67.93 -0.45 2.07 16 26 C -0.20 -3.83 9.80 -26.74 -0.26 -4.09 16 27 C -0.22 -4.51 10.36 -26.73 -0.28 -4.79 16 28 C -0.12 -0.90 4.67 -26.51 -0.12 -1.02 16 29 C 0.10 0.64 6.98 -3.92 -0.03 0.62 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.10 0.91 8.11 -51.93 -0.42 0.48 16 35 H 0.10 0.84 7.95 -51.93 -0.41 0.43 16 36 H 0.40 3.97 8.20 -40.82 -0.33 3.64 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 42 H 0.10 2.34 5.59 -51.93 -0.29 2.05 16 43 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 44 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.10 2.06 6.46 -51.93 -0.34 1.72 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 49 H 0.10 0.81 7.79 -51.93 -0.40 0.40 16 50 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 51 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 418.56 15.07 6.31 6.31 Total: -1.00 -32.40 418.56 -11.69 -44.08 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -8.87 Total: 6.50 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -3.60 Total: -6.92 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.58 Total: -57.18 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.40 -11.69 -44.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707479998.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.975 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds