Wall clock time and date at job start Wed Apr 1 2020 04:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34849 * 125.96123 * 2 1 4 4 N 1.36322 * 106.68810 * 179.75176 * 3 2 1 5 5 C 1.35425 * 107.39313 * 0.19714 * 4 3 2 6 6 N 1.30089 * 108.63259 * 0.05497 * 5 4 3 7 7 C 1.51041 * 123.98075 * 180.10568 * 5 4 3 8 8 C 1.53405 * 108.20180 * 15.98290 * 7 5 4 9 9 H 1.09001 * 109.51009 * 71.12481 * 8 7 5 10 10 C 1.50702 * 109.51019 * 191.22061 * 8 7 5 11 11 O 1.21281 * 119.99656 * 91.65267 * 10 8 7 12 12 N 1.34773 * 119.99886 * 271.64785 * 10 8 7 13 13 C 1.47024 * 125.64664 * 185.70134 * 12 10 8 14 14 C 1.54321 * 107.27275 * 178.90454 * 13 12 10 15 15 C 1.55160 * 102.94053 * 337.80949 * 14 13 12 16 16 H 1.09000 * 111.00239 * 277.42264 * 15 14 13 17 17 C 1.53004 * 111.00411 * 153.61360 * 15 14 13 18 18 N 1.46500 * 109.46882 * 66.44962 * 17 15 14 19 19 C 1.46496 * 120.00111 * 269.99867 * 18 17 15 20 20 C 1.36942 * 119.99786 * 90.00332 * 18 17 15 21 21 H 1.08001 * 119.99814 * 21.35281 * 20 18 17 22 22 C 1.38811 * 119.99801 * 201.35002 * 20 18 17 23 23 N 1.31619 * 120.00108 * 12.98960 * 22 20 18 24 24 Si 1.86792 * 119.99880 * 192.98428 * 22 20 18 25 25 H 1.48500 * 109.47624 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47089 * 120.00522 * 24 22 20 27 27 H 1.48505 * 109.47468 * 240.00152 * 24 22 20 28 28 C 1.47419 * 125.64865 * 5.39620 * 12 10 8 29 29 C 1.53151 * 109.23373 * 311.14639 * 8 7 5 30 30 C 1.46465 * 127.77945 * 180.16787 * 4 3 2 31 31 H 1.08994 * 109.47244 * 90.00174 * 1 2 3 32 32 H 1.09003 * 109.46785 * 210.00496 * 1 2 3 33 33 H 1.08994 * 109.46984 * 329.99727 * 1 2 3 34 34 H 1.07993 * 126.65835 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.71817 * 135.65869 * 7 5 4 36 36 H 1.09001 * 109.72165 * 256.30645 * 7 5 4 37 37 H 1.09001 * 109.88225 * 298.32360 * 13 12 10 38 38 H 1.09005 * 109.88179 * 59.48512 * 13 12 10 39 39 H 1.09007 * 110.71932 * 96.16572 * 14 13 12 40 40 H 1.08999 * 110.72338 * 219.26487 * 14 13 12 41 41 H 1.08996 * 109.46702 * 186.44864 * 17 15 14 42 42 H 1.08997 * 109.46634 * 306.45310 * 17 15 14 43 43 H 1.09002 * 109.47338 * 95.15939 * 19 18 17 44 44 H 1.09006 * 109.47145 * 215.16294 * 19 18 17 45 45 H 1.08999 * 109.47235 * 335.15341 * 19 18 17 46 46 H 0.96993 * 120.00287 * 179.97438 * 23 22 20 47 47 H 1.09004 * 110.36612 * 322.99839 * 28 12 10 48 48 H 1.08996 * 110.36968 * 85.32636 * 28 12 10 49 49 H 1.09000 * 109.46940 * 189.49333 * 29 8 7 50 50 H 1.08999 * 109.46557 * 309.48708 * 29 8 7 51 51 H 1.09007 * 109.58179 * 316.90634 * 30 4 3 52 52 H 1.09004 * 109.58575 * 77.31622 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5858 0.6415 0.0057 5 6 3.5413 -0.7120 0.0045 6 7 2.2957 -1.0870 -0.0027 7 6 4.7654 -1.5968 0.0119 8 6 5.9719 -0.7424 0.4215 9 1 5.8977 -0.4913 1.4796 10 6 7.2424 -1.5146 0.1753 11 8 7.8208 -1.4081 -0.8853 12 7 7.7357 -2.3235 1.1338 13 6 9.0188 -3.0389 1.0745 14 6 9.1731 -3.8138 2.4000 15 6 8.2338 -3.0427 3.3647 16 1 8.7308 -2.1631 3.7738 17 6 7.7296 -3.9548 4.4850 18 7 8.8530 -4.3426 5.3416 19 6 9.6229 -5.5513 5.0375 20 6 9.1833 -3.5753 6.4267 21 1 8.4522 -2.9082 6.8590 22 6 10.4577 -3.6551 6.9711 23 7 11.4198 -4.2612 6.3081 24 14 10.8074 -2.9023 8.6444 25 1 9.5670 -2.2846 9.1784 26 1 11.2733 -3.9609 9.5759 27 1 11.8599 -1.8633 8.5097 28 6 7.0811 -2.6325 2.4181 29 6 5.9854 0.5433 -0.4106 30 6 4.8148 1.4381 0.0113 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5138 34 1 1.9764 2.1221 0.0004 35 1 4.6289 -2.4074 0.7276 36 1 4.9277 -2.0085 -0.9843 37 1 9.0165 -3.7353 0.2360 38 1 9.8360 -2.3259 0.9646 39 1 8.8431 -4.8463 2.2838 40 1 10.2046 -3.7772 2.7504 41 1 6.9862 -3.4235 5.0791 42 1 7.2783 -4.8472 4.0514 43 1 10.5028 -5.2841 4.4523 44 1 9.9355 -6.0265 5.9674 45 1 9.0031 -6.2429 4.4668 46 1 12.3104 -4.3167 6.6883 47 1 6.5680 -1.7516 2.8040 48 1 6.3802 -3.4585 2.2976 49 1 6.9243 1.0722 -0.2468 50 1 5.8888 0.2932 -1.4671 51 1 4.7167 2.2663 -0.6906 52 1 4.9943 1.8259 1.0141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713750812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:05 Heat of formation + Delta-G solvation = 43.194166 kcal Electronic energy + Delta-G solvation = -30910.671882 eV Core-core repulsion = 26911.416804 eV Total energy + Delta-G solvation = -3999.255078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.59245 -40.23382 -37.95090 -36.48216 -35.37122 -33.64718 -32.18314 -31.79209 -30.55546 -29.47118 -28.99228 -27.42369 -26.07692 -25.48768 -24.48046 -23.69762 -22.21004 -21.22794 -20.60569 -19.77264 -19.47814 -18.97616 -17.29557 -17.09128 -16.65026 -16.36818 -16.06822 -15.33015 -14.94953 -14.60519 -14.49830 -14.30233 -14.06302 -13.98222 -13.65511 -13.48820 -13.33433 -13.19475 -13.05575 -12.74723 -12.62244 -12.49789 -12.17461 -12.04470 -11.95812 -11.69836 -11.62221 -11.46184 -11.35894 -11.04759 -10.84775 -10.74354 -10.51950 -10.24351 -10.12012 -10.04663 -9.93315 -9.87858 -9.75879 -9.72023 -8.60877 -8.56540 -8.39452 -6.82106 -5.77054 -3.21809 1.80856 2.47295 2.51354 2.87488 2.92662 3.34037 3.42054 3.43294 3.92171 4.11252 4.20156 4.22400 4.45052 4.63649 4.67023 4.76306 4.81141 4.88303 4.94863 5.01753 5.12747 5.14047 5.26363 5.34003 5.37115 5.42518 5.44644 5.49651 5.50682 5.61296 5.66519 5.68556 5.73402 5.82125 5.82967 5.96192 6.10238 6.12924 6.22940 6.29047 6.47657 6.58034 6.58941 6.66429 6.75519 6.91296 6.93651 7.35324 7.53564 7.69384 7.77739 7.92896 8.08765 8.34957 9.19551 9.83047 10.30987 11.27818 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.002342 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.658623 B =11951.619183 C =12689.386964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.005 4.005 3 C -0.055 4.055 4 N -0.455 5.455 5 C 0.216 3.784 6 N -0.484 5.484 7 C -0.020 4.020 8 C -0.109 4.109 9 H 0.100 0.900 10 C 0.535 3.465 11 O -0.545 6.545 12 N -0.610 5.610 13 C 0.107 3.893 14 C -0.114 4.114 15 C -0.116 4.116 16 H 0.084 0.916 17 C 0.163 3.837 18 N -0.599 5.599 19 C 0.164 3.836 20 C -0.253 4.253 21 H 0.069 0.931 22 C 0.001 3.999 23 N -0.907 5.907 24 Si 0.902 3.098 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.097 3.903 29 C -0.116 4.116 30 C 0.104 3.896 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.173 0.827 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.031 0.969 44 H 0.041 0.959 45 H -0.004 1.004 46 H 0.251 0.749 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.096 0.904 50 H 0.087 0.913 51 H 0.095 0.905 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.244 9.920 -13.485 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.188 4.188 4 N -0.139 5.139 5 C -0.046 4.046 6 N -0.203 5.203 7 C -0.059 4.059 8 C -0.131 4.131 9 H 0.119 0.881 10 C 0.322 3.678 11 O -0.423 6.423 12 N -0.342 5.342 13 C -0.015 4.015 14 C -0.152 4.152 15 C -0.138 4.138 16 H 0.102 0.898 17 C 0.035 3.965 18 N -0.321 5.321 19 C 0.019 3.981 20 C -0.383 4.383 21 H 0.086 0.914 22 C -0.197 4.197 23 N -0.552 5.552 24 Si 0.733 3.267 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.218 1.218 28 C -0.026 4.026 29 C -0.154 4.154 30 C -0.018 4.018 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.190 0.810 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.015 0.985 46 H 0.062 0.938 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.114 0.886 50 H 0.105 0.895 51 H 0.113 0.887 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.928 9.266 -14.038 22.490 hybrid contribution 0.738 1.460 0.971 1.902 sum -14.190 10.726 -13.068 22.072 Atomic orbital electron populations 1.19997 0.87688 1.02573 1.02011 1.20804 0.96476 0.88287 1.07832 1.22288 0.82807 1.00371 1.13343 1.45365 1.06576 1.07423 1.54506 1.23033 0.94601 0.81515 1.05495 1.69951 0.99591 1.30415 1.20376 1.20035 0.85833 0.95517 1.04501 1.21397 0.93300 0.95833 1.02563 0.88138 1.19853 0.85740 0.79181 0.83013 1.90701 1.61378 1.65446 1.24743 1.48624 1.21593 1.45763 1.18267 1.22056 0.84853 0.95369 0.99217 1.22593 1.02219 0.98326 0.92049 1.23178 0.94367 1.00754 0.95538 0.89765 1.20745 0.90875 0.94838 0.90086 1.43946 1.34418 1.25416 1.28309 1.20830 0.92944 0.85724 0.98587 1.19238 0.94956 1.20047 1.04032 0.91356 1.24984 0.95382 1.00231 0.99091 1.70065 1.01101 1.47335 1.36702 0.86220 0.77836 0.78464 0.84218 1.20377 1.21650 1.21830 1.22571 0.96910 1.00263 0.82883 1.21737 0.97936 0.94316 1.01399 1.22041 0.81899 0.94311 1.03534 0.91621 0.91195 0.91480 0.80955 0.88000 0.88615 0.91839 0.91753 0.91245 0.89224 0.93524 0.94104 0.95039 0.94026 0.98527 0.93827 0.91064 0.91151 0.88594 0.89476 0.88713 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.42 36.01 0.38 -0.15 16 2 C 0.00 -0.06 7.10 -82.72 -0.59 -0.64 16 3 C -0.06 -0.52 11.55 -16.76 -0.19 -0.72 16 4 N -0.46 -4.47 3.13 -113.76 -0.36 -4.82 16 5 C 0.22 2.55 7.65 -155.24 -1.19 1.37 16 6 N -0.48 -6.56 11.24 -6.88 -0.08 -6.64 16 7 C -0.02 -0.20 5.63 -27.51 -0.15 -0.36 16 8 C -0.11 -1.09 2.06 -91.48 -0.19 -1.28 16 9 H 0.10 0.93 6.62 -51.93 -0.34 0.58 16 10 C 0.53 7.08 6.89 -10.99 -0.08 7.00 16 11 O -0.54 -8.93 16.65 5.56 0.09 -8.83 16 12 N -0.61 -8.20 3.33 -170.66 -0.57 -8.77 16 13 C 0.11 1.54 6.87 -3.06 -0.02 1.52 16 14 C -0.11 -1.78 5.39 -24.90 -0.13 -1.92 16 15 C -0.12 -1.86 3.27 -88.58 -0.29 -2.15 16 16 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 17 C 0.16 2.95 5.22 -4.04 -0.02 2.92 16 18 N -0.60 -13.88 2.85 -181.12 -0.52 -14.40 16 19 C 0.16 3.77 8.18 59.84 0.49 4.26 16 20 C -0.25 -6.56 9.68 -15.06 -0.15 -6.71 16 21 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 22 C 0.00 0.04 5.10 -17.43 -0.09 -0.05 16 23 N -0.91 -25.32 10.61 55.49 0.59 -24.73 16 24 Si 0.90 21.20 29.57 -169.99 -5.03 16.17 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 C 0.10 1.21 6.21 -2.65 -0.02 1.19 16 29 C -0.12 -0.98 4.68 -26.52 -0.12 -1.10 16 30 C 0.10 0.72 6.98 -3.93 -0.03 0.69 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.03 8.11 -51.93 -0.42 0.61 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.05 8.01 -51.93 -0.42 0.64 16 40 H 0.09 1.64 7.76 -51.93 -0.40 1.23 16 41 H 0.05 0.82 8.03 -51.93 -0.42 0.41 16 42 H 0.04 0.68 7.82 -51.93 -0.41 0.27 16 43 H 0.03 0.77 6.90 -51.93 -0.36 0.42 16 44 H 0.04 1.06 7.23 -51.93 -0.38 0.68 16 45 H 0.00 -0.08 7.83 -51.93 -0.41 -0.48 16 46 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.07 0.79 6.72 -51.93 -0.35 0.44 16 48 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 49 H 0.10 0.77 8.12 -51.93 -0.42 0.35 16 50 H 0.09 0.83 8.10 -51.93 -0.42 0.40 16 51 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 408.36 15.07 6.15 6.15 Total: -1.00 -32.45 408.36 -11.03 -43.48 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -8.93 Total: -1.49 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -2.39 Total: 3.89 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.93 Total: -59.36 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.45 -11.03 -43.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713750812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.670 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds