Wall clock time and date at job start Wed Apr 1 2020 04:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34849 * 125.96123 * 2 1 4 4 N 1.36322 * 106.68810 * 179.75176 * 3 2 1 5 5 C 1.35425 * 107.39313 * 0.19714 * 4 3 2 6 6 N 1.30089 * 108.63259 * 0.05497 * 5 4 3 7 7 C 1.51041 * 123.98075 * 180.10568 * 5 4 3 8 8 C 1.53405 * 108.20180 * 15.98290 * 7 5 4 9 9 H 1.09001 * 109.51009 * 71.12481 * 8 7 5 10 10 C 1.50702 * 109.51019 * 191.22061 * 8 7 5 11 11 O 1.21281 * 119.99656 * 91.65267 * 10 8 7 12 12 N 1.34773 * 119.99886 * 271.64785 * 10 8 7 13 13 C 1.47024 * 125.64664 * 185.70134 * 12 10 8 14 14 C 1.54321 * 107.27275 * 178.90454 * 13 12 10 15 15 C 1.55160 * 102.94053 * 337.80949 * 14 13 12 16 16 H 1.09000 * 111.00239 * 277.42264 * 15 14 13 17 17 C 1.53004 * 111.00411 * 153.61360 * 15 14 13 18 18 N 1.46500 * 109.46882 * 66.44962 * 17 15 14 19 19 C 1.46496 * 120.00111 * 269.99867 * 18 17 15 20 20 C 1.36942 * 119.99786 * 90.00332 * 18 17 15 21 21 H 1.08001 * 119.99814 * 21.35281 * 20 18 17 22 22 C 1.38811 * 119.99801 * 201.35002 * 20 18 17 23 23 N 1.31619 * 120.00108 * 12.98960 * 22 20 18 24 24 Si 1.86792 * 119.99880 * 192.98428 * 22 20 18 25 25 H 1.48500 * 109.47624 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47089 * 120.00522 * 24 22 20 27 27 H 1.48505 * 109.47468 * 240.00152 * 24 22 20 28 28 C 1.47419 * 125.64865 * 5.39620 * 12 10 8 29 29 C 1.53151 * 109.23373 * 311.14639 * 8 7 5 30 30 C 1.46465 * 127.77945 * 180.16787 * 4 3 2 31 31 H 1.08994 * 109.47244 * 90.00174 * 1 2 3 32 32 H 1.09003 * 109.46785 * 210.00496 * 1 2 3 33 33 H 1.08994 * 109.46984 * 329.99727 * 1 2 3 34 34 H 1.07993 * 126.65835 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.71817 * 135.65869 * 7 5 4 36 36 H 1.09001 * 109.72165 * 256.30645 * 7 5 4 37 37 H 1.09001 * 109.88225 * 298.32360 * 13 12 10 38 38 H 1.09005 * 109.88179 * 59.48512 * 13 12 10 39 39 H 1.09007 * 110.71932 * 96.16572 * 14 13 12 40 40 H 1.08999 * 110.72338 * 219.26487 * 14 13 12 41 41 H 1.08996 * 109.46702 * 186.44864 * 17 15 14 42 42 H 1.08997 * 109.46634 * 306.45310 * 17 15 14 43 43 H 1.09002 * 109.47338 * 95.15939 * 19 18 17 44 44 H 1.09006 * 109.47145 * 215.16294 * 19 18 17 45 45 H 1.08999 * 109.47235 * 335.15341 * 19 18 17 46 46 H 0.96993 * 120.00287 * 179.97438 * 23 22 20 47 47 H 1.09004 * 110.36612 * 322.99839 * 28 12 10 48 48 H 1.08996 * 110.36968 * 85.32636 * 28 12 10 49 49 H 1.09000 * 109.46940 * 189.49333 * 29 8 7 50 50 H 1.08999 * 109.46557 * 309.48708 * 29 8 7 51 51 H 1.09007 * 109.58179 * 316.90634 * 30 4 3 52 52 H 1.09004 * 109.58575 * 77.31622 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5858 0.6415 0.0057 5 6 3.5413 -0.7120 0.0045 6 7 2.2957 -1.0870 -0.0027 7 6 4.7654 -1.5968 0.0119 8 6 5.9719 -0.7424 0.4215 9 1 5.8977 -0.4913 1.4796 10 6 7.2424 -1.5146 0.1753 11 8 7.8208 -1.4081 -0.8853 12 7 7.7357 -2.3235 1.1338 13 6 9.0188 -3.0389 1.0745 14 6 9.1731 -3.8138 2.4000 15 6 8.2338 -3.0427 3.3647 16 1 8.7308 -2.1631 3.7738 17 6 7.7296 -3.9548 4.4850 18 7 8.8530 -4.3426 5.3416 19 6 9.6229 -5.5513 5.0375 20 6 9.1833 -3.5753 6.4267 21 1 8.4522 -2.9082 6.8590 22 6 10.4577 -3.6551 6.9711 23 7 11.4198 -4.2612 6.3081 24 14 10.8074 -2.9023 8.6444 25 1 9.5670 -2.2846 9.1784 26 1 11.2733 -3.9609 9.5759 27 1 11.8599 -1.8633 8.5097 28 6 7.0811 -2.6325 2.4181 29 6 5.9854 0.5433 -0.4106 30 6 4.8148 1.4381 0.0113 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5138 34 1 1.9764 2.1221 0.0004 35 1 4.6289 -2.4074 0.7276 36 1 4.9277 -2.0085 -0.9843 37 1 9.0165 -3.7353 0.2360 38 1 9.8360 -2.3259 0.9646 39 1 8.8431 -4.8463 2.2838 40 1 10.2046 -3.7772 2.7504 41 1 6.9862 -3.4235 5.0791 42 1 7.2783 -4.8472 4.0514 43 1 10.5028 -5.2841 4.4523 44 1 9.9355 -6.0265 5.9674 45 1 9.0031 -6.2429 4.4668 46 1 12.3104 -4.3167 6.6883 47 1 6.5680 -1.7516 2.8040 48 1 6.3802 -3.4585 2.2976 49 1 6.9243 1.0722 -0.2468 50 1 5.8888 0.2932 -1.4671 51 1 4.7167 2.2663 -0.6906 52 1 4.9943 1.8259 1.0141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713750812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:03 Heat of formation + Delta-G solvation = 25.621774 kcal Electronic energy + Delta-G solvation = -30911.433878 eV Core-core repulsion = 26911.416804 eV Total energy + Delta-G solvation = -4000.017074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.33390 -41.31682 -39.16094 -37.37977 -37.00132 -34.45892 -33.77775 -32.49534 -32.06015 -30.68892 -29.84190 -28.17512 -27.90643 -27.02773 -25.34423 -24.56201 -23.39253 -22.74472 -21.38211 -21.13557 -20.32557 -19.91939 -18.63906 -18.24051 -17.78153 -17.45379 -16.99065 -16.62714 -16.28676 -15.78165 -15.44412 -15.34570 -15.16291 -15.03738 -14.86697 -14.65784 -14.54769 -14.26338 -14.01270 -13.86134 -13.63961 -13.37743 -13.23662 -13.18049 -13.07196 -12.85082 -12.78896 -12.63643 -12.58007 -12.42688 -12.22651 -12.18903 -12.10268 -11.92645 -11.71930 -11.58315 -11.30880 -10.97888 -10.87748 -10.59524 -10.46629 -9.71010 -9.11986 -8.73723 -7.78155 -5.23508 1.08415 1.44415 1.46655 1.49623 1.58099 1.83191 1.89599 2.09024 2.53954 3.08565 3.34490 3.40987 3.45542 3.52227 3.55321 3.75886 3.89081 4.01204 4.05445 4.09829 4.12671 4.23084 4.31890 4.34872 4.43027 4.46719 4.51492 4.59678 4.61449 4.68097 4.72487 4.80601 4.84896 4.91817 4.93173 4.95827 4.99394 5.04667 5.05568 5.10893 5.18656 5.26385 5.34948 5.39018 5.42233 5.52816 5.69863 5.82493 5.89884 6.23549 6.37632 6.46926 7.01924 7.16502 7.21112 7.94860 8.36632 9.24987 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.002342 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.658623 B =11951.619183 C =12689.386964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.038 4.038 3 C -0.045 4.045 4 N -0.455 5.455 5 C 0.197 3.803 6 N -0.523 5.523 7 C -0.013 4.013 8 C -0.097 4.097 9 H 0.115 0.885 10 C 0.535 3.465 11 O -0.579 6.579 12 N -0.611 5.611 13 C 0.113 3.887 14 C -0.106 4.106 15 C -0.110 4.110 16 H 0.055 0.945 17 C 0.160 3.840 18 N -0.615 5.615 19 C 0.179 3.821 20 C -0.251 4.251 21 H 0.073 0.927 22 C -0.055 4.055 23 N -0.937 5.937 24 Si 0.960 3.040 25 H -0.266 1.266 26 H -0.296 1.296 27 H -0.297 1.297 28 C 0.108 3.892 29 C -0.113 4.113 30 C 0.106 3.894 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.208 0.792 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.009 0.991 44 H 0.009 0.991 45 H 0.029 0.971 46 H 0.244 0.756 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.073 0.927 51 H 0.120 0.880 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.558 11.843 -13.611 25.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.166 4.166 3 C -0.178 4.178 4 N -0.138 5.138 5 C -0.066 4.066 6 N -0.244 5.244 7 C -0.052 4.052 8 C -0.119 4.119 9 H 0.133 0.867 10 C 0.325 3.675 11 O -0.459 6.459 12 N -0.344 5.344 13 C -0.010 4.010 14 C -0.144 4.144 15 C -0.132 4.132 16 H 0.074 0.926 17 C 0.033 3.967 18 N -0.337 5.337 19 C 0.034 3.966 20 C -0.382 4.382 21 H 0.090 0.910 22 C -0.250 4.250 23 N -0.585 5.585 24 Si 0.790 3.210 25 H -0.190 1.190 26 H -0.223 1.223 27 H -0.224 1.224 28 C -0.014 4.014 29 C -0.151 4.151 30 C -0.015 4.015 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.225 0.775 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.120 0.880 50 H 0.092 0.908 51 H 0.138 0.862 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.281 11.207 -14.166 24.999 hybrid contribution 1.400 0.855 0.946 1.894 sum -15.881 12.063 -13.221 23.927 Atomic orbital electron populations 1.20045 0.86202 1.03154 1.02522 1.21371 0.97830 0.88462 1.08961 1.22842 0.82288 1.01474 1.11195 1.45569 1.07598 1.07005 1.53581 1.23104 0.94395 0.82617 1.06483 1.69888 1.00771 1.32199 1.21546 1.19951 0.85687 0.95559 1.04049 1.21358 0.91014 0.95869 1.03681 0.86689 1.20401 0.86322 0.78600 0.82197 1.90689 1.62643 1.66409 1.26129 1.48664 1.21215 1.45739 1.18738 1.21897 0.85371 0.95186 0.98538 1.22432 1.00296 0.99013 0.92627 1.22881 0.95548 0.99158 0.95566 0.92612 1.20923 0.89290 0.96279 0.90160 1.44160 1.35250 1.25332 1.28974 1.20556 0.92925 0.86249 0.96899 1.19554 0.94754 1.19244 1.04648 0.90953 1.25669 0.95614 1.01602 1.02105 1.70224 1.01069 1.49248 1.37913 0.85299 0.77720 0.77302 0.80712 1.18994 1.22308 1.22431 1.22512 0.95453 1.02046 0.81393 1.21714 0.99149 0.93917 1.00346 1.22242 0.79916 0.93972 1.05359 0.91115 0.92296 0.89196 0.77533 0.87706 0.89633 0.91315 0.92839 0.90400 0.92526 0.92627 0.91820 0.97306 0.97241 0.95254 0.94621 0.88825 0.89076 0.87981 0.90822 0.86206 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.42 71.24 0.74 -0.16 16 2 C -0.04 -0.79 7.10 41.41 0.29 -0.50 16 3 C -0.04 -0.71 11.55 83.22 0.96 0.25 16 4 N -0.45 -7.66 3.13 -513.82 -1.61 -9.27 16 5 C 0.20 4.34 7.65 138.23 1.06 5.40 16 6 N -0.52 -13.74 11.24 -175.68 -1.98 -15.71 16 7 C -0.01 -0.25 5.63 30.09 0.17 -0.09 16 8 C -0.10 -1.73 2.06 -11.35 -0.02 -1.76 16 9 H 0.12 1.73 6.62 -2.39 -0.02 1.72 16 10 C 0.54 13.40 6.89 87.66 0.60 14.00 16 11 O -0.58 -18.59 16.65 -3.03 -0.05 -18.64 16 12 N -0.61 -15.45 3.33 -812.23 -2.70 -18.15 16 13 C 0.11 3.19 6.87 86.73 0.60 3.78 16 14 C -0.11 -3.28 5.39 31.78 0.17 -3.11 16 15 C -0.11 -3.37 3.27 -9.47 -0.03 -3.40 16 16 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 17 C 0.16 5.47 5.22 86.38 0.45 5.92 16 18 N -0.61 -28.21 2.85 -726.93 -2.07 -30.28 16 19 C 0.18 8.29 8.18 127.77 1.04 9.34 16 20 C -0.25 -12.98 9.68 84.03 0.81 -12.17 16 21 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 22 C -0.06 -2.98 5.10 84.86 0.43 -2.55 16 23 N -0.94 -53.82 10.61 21.65 0.23 -53.59 16 24 Si 0.96 43.99 29.57 68.60 2.03 46.02 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 28 C 0.11 2.42 6.21 86.78 0.54 2.96 16 29 C -0.11 -1.65 4.68 30.73 0.14 -1.51 16 30 C 0.11 1.08 6.98 86.47 0.60 1.69 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.21 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.09 1.81 8.11 -2.39 -0.02 1.79 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.08 2.28 8.01 -2.38 -0.02 2.26 16 40 H 0.06 2.14 7.76 -2.39 -0.02 2.13 16 41 H 0.06 1.82 8.03 -2.39 -0.02 1.80 16 42 H 0.06 1.91 7.82 -2.39 -0.02 1.89 16 43 H 0.01 0.44 6.90 -2.39 -0.02 0.42 16 44 H 0.01 0.46 7.23 -2.38 -0.02 0.45 16 45 H 0.03 1.14 7.83 -2.39 -0.02 1.12 16 46 H 0.24 13.81 8.31 -92.71 -0.77 13.03 16 47 H 0.09 1.73 6.72 -2.39 -0.02 1.71 16 48 H 0.09 1.74 8.03 -2.39 -0.02 1.72 16 49 H 0.10 1.39 8.12 -2.39 -0.02 1.37 16 50 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 51 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 52 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -72.28 408.36 3.31 -68.97 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.89 Total: 12.56 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 8.57 Total: 18.10 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -8.13 Total: -127.00 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.05 Total: -18.64 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.28 3.31 -68.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713750812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.595 kcal (2) G-P(sol) polarization free energy of solvation -72.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds