Wall clock time and date at job start Wed Apr 1 2020 04:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34851 * 125.96351 * 2 1 4 4 N 1.36308 * 106.68903 * 180.02562 * 3 2 1 5 5 C 1.35426 * 107.39957 * 359.93712 * 4 3 2 6 6 N 1.30082 * 108.62490 * 0.08627 * 5 4 3 7 7 C 1.51048 * 123.97883 * 180.12381 * 5 4 3 8 8 C 1.53393 * 108.21289 * 15.93854 * 7 5 4 9 9 H 1.09007 * 109.51018 * 71.16372 * 8 7 5 10 10 C 1.50695 * 109.51059 * 191.25164 * 8 7 5 11 11 O 1.21285 * 119.99991 * 93.18213 * 10 8 7 12 12 N 1.34783 * 120.00430 * 273.18884 * 10 8 7 13 13 C 1.47021 * 125.64277 * 3.25456 * 12 10 8 14 14 C 1.54372 * 107.28621 * 181.12383 * 13 12 10 15 15 C 1.55160 * 102.91938 * 22.14443 * 14 13 12 16 16 H 1.09003 * 111.00763 * 82.63304 * 15 14 13 17 17 C 1.53000 * 111.00642 * 206.44897 * 15 14 13 18 18 N 1.46498 * 109.47096 * 290.41984 * 17 15 14 19 19 C 1.46510 * 119.99588 * 269.99859 * 18 17 15 20 20 C 1.36931 * 120.00392 * 89.99740 * 18 17 15 21 21 H 1.08003 * 120.00363 * 218.66741 * 20 18 17 22 22 C 1.38810 * 119.99936 * 38.66195 * 20 18 17 23 23 N 1.31621 * 119.99989 * 25.95555 * 22 20 18 24 24 Si 1.86807 * 120.00087 * 205.95735 * 22 20 18 25 25 H 1.48500 * 109.47104 * 59.99886 * 24 22 20 26 26 H 1.48503 * 109.46647 * 299.99923 * 24 22 20 27 27 H 1.48500 * 109.47031 * 180.02562 * 24 22 20 28 28 C 1.47424 * 125.64954 * 183.29926 * 12 10 8 29 29 C 1.53149 * 109.24346 * 311.18259 * 8 7 5 30 30 C 1.46477 * 127.77810 * 179.88474 * 4 3 2 31 31 H 1.09004 * 109.46594 * 269.99551 * 1 2 3 32 32 H 1.08999 * 109.47415 * 29.99175 * 1 2 3 33 33 H 1.08995 * 109.47701 * 149.99813 * 1 2 3 34 34 H 1.08000 * 126.65728 * 0.06616 * 3 2 1 35 35 H 1.09001 * 109.71304 * 256.25687 * 7 5 4 36 36 H 1.08998 * 109.74951 * 135.64031 * 7 5 4 37 37 H 1.08992 * 109.88358 * 300.51468 * 13 12 10 38 38 H 1.09002 * 109.88162 * 61.52481 * 13 12 10 39 39 H 1.08995 * 110.71407 * 263.79737 * 14 13 12 40 40 H 1.09004 * 110.75499 * 140.50550 * 14 13 12 41 41 H 1.08999 * 109.47229 * 170.41495 * 17 15 14 42 42 H 1.09003 * 109.46932 * 50.41662 * 17 15 14 43 43 H 1.08998 * 109.46442 * 264.99948 * 19 18 17 44 44 H 1.08998 * 109.47215 * 24.99694 * 19 18 17 45 45 H 1.08998 * 109.46984 * 145.00119 * 19 18 17 46 46 H 0.96994 * 119.99713 * 4.68074 * 23 22 20 47 47 H 1.08997 * 110.36593 * 36.99642 * 28 12 10 48 48 H 1.09006 * 110.36566 * 274.67282 * 28 12 10 49 49 H 1.08993 * 109.46741 * 189.49153 * 29 8 7 50 50 H 1.09000 * 109.46415 * 309.47973 * 29 8 7 51 51 H 1.08995 * 109.58184 * 316.96881 * 30 4 3 52 52 H 1.09002 * 109.58346 * 77.23872 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6415 -0.0006 5 6 3.5413 -0.7120 0.0005 6 7 2.2957 -1.0869 -0.0002 7 6 4.7656 -1.5967 0.0030 8 6 5.9742 -0.7416 0.4041 9 1 5.9063 -0.4889 1.4623 10 6 7.2432 -1.5141 0.1518 11 8 7.8306 -1.3881 -0.9018 12 7 7.7256 -2.3452 1.0970 13 6 7.0825 -2.6430 2.3850 14 6 8.0072 -3.6180 3.1449 15 6 9.3887 -3.3734 2.4823 16 1 9.8820 -2.5039 2.9168 17 6 10.2764 -4.6148 2.5904 18 7 10.6725 -4.8117 3.9870 19 6 11.8988 -4.1915 4.4951 20 6 9.8966 -5.5754 4.8176 21 1 9.7538 -5.2796 5.8465 22 6 9.2936 -6.7297 4.3373 23 7 9.8229 -7.3737 3.3187 24 14 7.7307 -7.3690 5.1363 25 1 6.6658 -6.3390 5.0348 26 1 7.9936 -7.6701 6.5665 27 1 7.2909 -8.6065 4.4431 28 6 8.9858 -3.1054 1.0107 29 6 5.9829 0.5428 -0.4299 30 6 4.8148 1.4382 -0.0031 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3634 -0.8899 -0.5138 34 1 1.9763 2.1222 0.0010 35 1 4.9222 -2.0105 -0.9932 36 1 4.6335 -2.4063 0.7207 37 1 6.9605 -1.7249 2.9596 38 1 6.1103 -3.1061 2.2157 39 1 7.6856 -4.6489 2.9968 40 1 8.0396 -3.3718 4.2062 41 1 11.1665 -4.4797 1.9759 42 1 9.7240 -5.4878 2.2429 43 1 12.7196 -4.9060 4.4334 44 1 12.1364 -3.3125 3.8960 45 1 11.7525 -3.8949 5.5336 46 1 10.6698 -7.0813 2.9473 47 1 9.7519 -2.5141 0.5092 48 1 8.8260 -4.0461 0.4838 49 1 6.9227 1.0719 -0.2724 50 1 5.8803 0.2911 -1.4855 51 1 4.7124 2.2656 -0.7052 52 1 4.9990 1.8289 0.9976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713750813.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:08 Heat of formation + Delta-G solvation = 37.993365 kcal Electronic energy + Delta-G solvation = -31139.461789 eV Core-core repulsion = 27139.981187 eV Total energy + Delta-G solvation = -3999.480602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.59041 -40.18729 -37.92202 -36.45968 -35.57020 -33.63857 -31.88678 -31.72697 -30.95375 -29.30055 -29.06325 -27.59035 -26.01291 -25.31386 -24.36849 -23.48847 -22.31311 -21.31793 -20.61195 -19.65848 -19.46483 -18.87052 -17.37649 -17.25914 -17.12151 -16.22511 -15.87182 -15.37594 -14.88394 -14.47930 -14.34902 -14.13352 -14.10184 -13.95056 -13.66919 -13.49235 -13.44875 -13.23989 -13.18754 -12.81037 -12.70136 -12.48975 -12.25747 -12.07764 -11.95586 -11.89026 -11.52662 -11.43289 -11.28703 -11.22079 -10.89364 -10.76006 -10.45929 -10.25274 -10.10791 -10.08875 -9.96151 -9.78789 -9.72053 -9.38216 -8.52934 -8.40066 -8.39073 -6.82653 -6.08759 -3.43153 1.80812 2.48803 2.52879 2.88927 2.96592 3.44119 3.46143 3.64920 3.93720 4.11371 4.20510 4.23363 4.52597 4.64247 4.67437 4.75751 4.83825 4.92157 5.01181 5.01244 5.07532 5.12818 5.26242 5.32760 5.37622 5.41158 5.48857 5.50704 5.51408 5.64439 5.68854 5.72606 5.75977 5.83600 5.88335 6.01992 6.10344 6.23691 6.28626 6.33178 6.41392 6.57874 6.59335 6.65478 6.68314 6.74082 6.90221 6.93842 7.20692 7.59181 7.93904 8.06593 8.12696 8.54155 9.08624 9.76672 10.24477 11.10591 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.002621 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.894266 B =10682.159256 C =12010.646774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.004 4.004 3 C -0.056 4.056 4 N -0.456 5.456 5 C 0.217 3.783 6 N -0.483 5.483 7 C -0.021 4.021 8 C -0.108 4.108 9 H 0.098 0.902 10 C 0.534 3.466 11 O -0.544 6.544 12 N -0.609 5.609 13 C 0.092 3.908 14 C -0.104 4.104 15 C -0.110 4.110 16 H 0.067 0.933 17 C 0.150 3.850 18 N -0.599 5.599 19 C 0.124 3.876 20 C -0.351 4.351 21 H 0.048 0.952 22 C -0.014 4.014 23 N -0.902 5.902 24 Si 1.054 2.946 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.285 1.285 28 C 0.109 3.891 29 C -0.116 4.116 30 C 0.105 3.895 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.173 0.827 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.030 0.970 42 H 0.081 0.919 43 H 0.003 0.997 44 H 0.026 0.974 45 H 0.031 0.969 46 H 0.269 0.731 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.095 0.905 50 H 0.087 0.913 51 H 0.094 0.906 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.973 19.147 -5.916 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.189 4.189 4 N -0.140 5.140 5 C -0.045 4.045 6 N -0.203 5.203 7 C -0.061 4.061 8 C -0.130 4.130 9 H 0.116 0.884 10 C 0.321 3.679 11 O -0.422 6.422 12 N -0.341 5.341 13 C -0.031 4.031 14 C -0.142 4.142 15 C -0.131 4.131 16 H 0.086 0.914 17 C 0.023 3.977 18 N -0.322 5.322 19 C -0.022 4.022 20 C -0.480 4.480 21 H 0.066 0.934 22 C -0.218 4.218 23 N -0.540 5.540 24 Si 0.883 3.117 25 H -0.216 1.216 26 H -0.219 1.219 27 H -0.210 1.210 28 C -0.013 4.013 29 C -0.154 4.154 30 C -0.017 4.017 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.190 0.810 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.049 0.951 42 H 0.099 0.901 43 H 0.021 0.979 44 H 0.044 0.956 45 H 0.049 0.951 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.114 0.886 50 H 0.106 0.894 51 H 0.113 0.887 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.986 17.374 -6.594 22.671 hybrid contribution 1.489 2.210 0.368 2.690 sum -11.497 19.584 -6.226 23.547 Atomic orbital electron populations 1.19999 0.87683 1.02495 1.02103 1.20811 0.96488 0.88282 1.07776 1.22277 0.82818 1.00344 1.13478 1.45369 1.06558 1.07423 1.54601 1.23042 0.94605 0.81477 1.05400 1.69958 0.99602 1.30401 1.20309 1.20052 0.85787 0.95530 1.04699 1.21373 0.93394 0.95829 1.02363 0.88361 1.19837 0.85727 0.79283 0.83023 1.90704 1.60664 1.65918 1.24920 1.48620 1.23763 1.43758 1.18004 1.22330 0.97341 0.99489 0.83894 1.22501 0.93139 0.99034 0.99512 1.23022 0.97128 1.01173 0.91822 0.91441 1.20844 0.95286 0.95176 0.86433 1.43757 1.22580 1.57725 1.08123 1.21076 0.89105 0.94774 0.97214 1.19727 1.28461 1.04448 0.95403 0.93436 1.25882 1.04162 0.92170 0.99619 1.70790 1.19401 1.37012 1.26807 0.83697 0.76202 0.76361 0.75442 1.21561 1.21875 1.21023 1.22397 0.84749 0.95483 0.98717 1.21727 0.97867 0.94309 1.01447 1.22024 0.81985 0.94313 1.03403 0.91519 0.91529 0.91219 0.80961 0.88503 0.87953 0.91997 0.91535 0.89881 0.89786 0.95149 0.90144 0.97906 0.95552 0.95079 0.91974 0.91107 0.91154 0.88623 0.89431 0.88746 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.42 36.01 0.38 -0.17 16 2 C 0.00 -0.05 7.10 -82.72 -0.59 -0.64 16 3 C -0.06 -0.54 11.55 -16.76 -0.19 -0.74 16 4 N -0.46 -4.57 3.13 -113.77 -0.36 -4.93 16 5 C 0.22 2.68 7.65 -155.24 -1.19 1.49 16 6 N -0.48 -6.81 11.24 -6.88 -0.08 -6.89 16 7 C -0.02 -0.24 5.63 -27.51 -0.15 -0.40 16 8 C -0.11 -1.12 2.05 -91.49 -0.19 -1.31 16 9 H 0.10 0.92 7.18 -51.93 -0.37 0.55 16 10 C 0.53 7.44 6.91 -10.99 -0.08 7.37 16 11 O -0.54 -9.29 16.57 5.55 0.09 -9.19 16 12 N -0.61 -8.83 3.33 -170.49 -0.57 -9.40 16 13 C 0.09 1.24 6.27 -3.04 -0.02 1.22 16 14 C -0.10 -1.77 5.57 -24.87 -0.14 -1.91 16 15 C -0.11 -1.91 3.27 -88.47 -0.29 -2.20 16 16 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 17 C 0.15 3.15 4.35 -4.04 -0.02 3.14 16 18 N -0.60 -13.98 2.55 -181.12 -0.46 -14.45 16 19 C 0.12 2.55 10.69 59.85 0.64 3.19 16 20 C -0.35 -9.07 8.58 -15.06 -0.13 -9.20 16 21 H 0.05 1.27 7.95 -52.48 -0.42 0.85 16 22 C -0.01 -0.38 4.81 -17.43 -0.08 -0.46 16 23 N -0.90 -25.54 12.32 55.49 0.68 -24.86 16 24 Si 1.05 23.79 29.99 -169.99 -5.10 18.69 16 25 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.11 1.76 6.36 -2.53 -0.02 1.74 16 29 C -0.12 -0.99 4.66 -26.53 -0.12 -1.12 16 30 C 0.10 0.72 6.98 -3.93 -0.03 0.70 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.10 1.14 8.11 -51.93 -0.42 0.72 16 36 H 0.10 1.14 7.44 -51.93 -0.39 0.75 16 37 H 0.06 0.72 7.71 -51.93 -0.40 0.32 16 38 H 0.07 0.83 7.44 -51.93 -0.39 0.44 16 39 H 0.08 1.63 7.96 -51.93 -0.41 1.22 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 42 H 0.08 1.93 5.53 -51.93 -0.29 1.64 16 43 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.03 0.47 8.03 -51.93 -0.42 0.05 16 45 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 46 H 0.27 7.76 7.26 -40.82 -0.30 7.47 16 47 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 48 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 49 H 0.10 0.76 8.11 -51.93 -0.42 0.34 16 50 H 0.09 0.86 8.11 -51.93 -0.42 0.44 16 51 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 409.59 15.07 6.17 6.17 Total: -1.00 -32.23 409.59 -10.74 -42.98 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.92 Total: 1.17 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -2.22 Total: 0.70 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.78 Total: -60.52 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.10 Total: 18.69 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.23 -10.74 -42.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713750813.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.971 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds