Wall clock time and date at job start Wed Apr 1 2020 04:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35046 * 125.97948 * 2 1 4 4 N 1.36308 * 106.67213 * 179.97438 * 3 2 1 5 5 C 1.35482 * 107.38446 * 0.11291 * 4 3 2 6 6 N 1.30088 * 108.67738 * 359.93154 * 5 4 3 7 7 C 1.51044 * 123.93431 * 179.90494 * 5 4 3 8 8 C 1.53395 * 108.24119 * 344.05891 * 7 5 4 9 9 H 1.09001 * 109.50883 * 288.90433 * 8 7 5 10 10 C 1.50701 * 109.51144 * 168.76167 * 8 7 5 11 11 O 1.21283 * 119.99604 * 267.17985 * 10 8 7 12 12 N 1.34777 * 120.00093 * 87.17921 * 10 8 7 13 13 C 1.47021 * 125.65023 * 4.90026 * 12 10 8 14 14 C 1.54321 * 107.27349 * 181.02700 * 13 12 10 15 15 C 1.55160 * 102.94253 * 22.19199 * 14 13 12 16 16 H 1.08994 * 111.00373 * 82.57569 * 15 14 13 17 17 C 1.53006 * 111.00299 * 206.39202 * 15 14 13 18 18 N 1.46502 * 109.46570 * 293.54138 * 17 15 14 19 19 C 1.46498 * 119.99760 * 90.00495 * 18 17 15 20 20 C 1.36935 * 120.00029 * 270.00187 * 18 17 15 21 21 H 1.07996 * 119.99893 * 23.74968 * 20 18 17 22 22 C 1.38811 * 119.99524 * 203.75642 * 20 18 17 23 23 N 1.31618 * 120.00681 * 11.35354 * 22 20 18 24 24 Si 1.86806 * 119.99669 * 191.35990 * 22 20 18 25 25 H 1.48493 * 109.47281 * 89.99635 * 24 22 20 26 26 H 1.48501 * 109.46780 * 209.99548 * 24 22 20 27 27 H 1.48504 * 109.46937 * 329.99258 * 24 22 20 28 28 C 1.47422 * 125.64732 * 184.59446 * 12 10 8 29 29 C 1.53148 * 109.23650 * 48.83156 * 8 7 5 30 30 C 1.46481 * 127.77317 * 180.19012 * 4 3 2 31 31 H 1.09003 * 109.47117 * 269.90655 * 1 2 3 32 32 H 1.09009 * 109.47113 * 29.90150 * 1 2 3 33 33 H 1.08998 * 109.47377 * 149.90258 * 1 2 3 34 34 H 1.07997 * 126.66697 * 0.09854 * 3 2 1 35 35 H 1.08998 * 109.71654 * 224.35206 * 7 5 4 36 36 H 1.09005 * 109.71541 * 103.75724 * 7 5 4 37 37 H 1.09001 * 109.87921 * 300.44316 * 13 12 10 38 38 H 1.08998 * 109.87934 * 61.44783 * 13 12 10 39 39 H 1.08995 * 110.72212 * 140.55644 * 14 13 12 40 40 H 1.09000 * 110.71767 * 263.83295 * 14 13 12 41 41 H 1.08997 * 109.47134 * 53.54147 * 17 15 14 42 42 H 1.08998 * 109.46735 * 173.55029 * 17 15 14 43 43 H 1.09004 * 109.47139 * 95.17026 * 19 18 17 44 44 H 1.08997 * 109.47245 * 215.17598 * 19 18 17 45 45 H 1.09002 * 109.47246 * 335.17939 * 19 18 17 46 46 H 0.97001 * 120.00730 * 180.02562 * 23 22 20 47 47 H 1.09000 * 110.36658 * 274.74549 * 28 12 10 48 48 H 1.09001 * 110.36760 * 37.06915 * 28 12 10 49 49 H 1.08992 * 109.46786 * 50.53577 * 29 8 7 50 50 H 1.09005 * 109.46267 * 170.51867 * 29 8 7 51 51 H 1.09000 * 109.58282 * 43.04865 * 30 4 3 52 52 H 1.08998 * 109.57942 * 282.63008 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3003 1.0928 0.0000 4 7 3.5868 0.6421 0.0006 5 6 3.5413 -0.7119 -0.0016 6 7 2.2956 -1.0869 -0.0020 7 6 4.7655 -1.5967 -0.0039 8 6 5.9749 -0.7419 -0.4034 9 1 5.9074 -0.4875 -1.4611 10 6 7.2434 -1.5154 -0.1508 11 8 7.8264 -1.3956 0.9059 12 7 7.7299 -2.3403 -1.0992 13 6 7.1850 -2.5029 -2.4550 14 6 8.0455 -3.5657 -3.1702 15 6 8.6763 -4.3530 -1.9913 16 1 7.9870 -5.1073 -1.6120 17 6 10.0059 -4.9874 -2.4046 18 7 9.7606 -6.0223 -3.4121 19 6 9.7651 -5.6748 -4.8353 20 6 9.5274 -7.3145 -3.0236 21 1 9.1472 -7.5205 -2.0340 22 6 9.7797 -8.3595 -3.9017 23 7 10.4465 -8.1376 -5.0146 24 14 9.1728 -10.0809 -3.5040 25 1 7.8105 -10.2673 -4.0647 26 1 10.0946 -11.0808 -4.1003 27 1 9.1310 -10.2629 -2.0307 28 6 8.9004 -3.2242 -0.9509 29 6 5.9837 0.5417 0.4319 30 6 4.8164 1.4382 0.0047 31 1 -0.3633 -0.0017 1.0277 32 1 -0.3634 0.8909 -0.5123 33 1 -0.3634 -0.8891 -0.5153 34 1 1.9782 2.1236 0.0015 35 1 4.6333 -2.4055 -0.7224 36 1 4.9212 -2.0115 0.9920 37 1 6.1497 -2.8396 -2.4004 38 1 7.2389 -1.5560 -2.9921 39 1 7.4225 -4.2192 -3.7808 40 1 8.8187 -3.0923 -3.7753 41 1 10.6596 -4.2216 -2.8220 42 1 10.4814 -5.4353 -1.5320 43 1 10.7520 -5.8714 -5.2542 44 1 9.0218 -6.2762 -5.3585 45 1 9.5250 -4.6180 -4.9519 46 1 10.6225 -8.8678 -5.6284 47 1 9.8180 -2.6787 -1.1712 48 1 8.9372 -3.6392 0.0563 49 1 5.8804 0.2891 1.4871 50 1 6.9239 1.0705 0.2754 51 1 4.7142 2.2647 0.7079 52 1 5.0024 1.8281 -0.9961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713750815.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:16 Heat of formation + Delta-G solvation = 42.853088 kcal Electronic energy + Delta-G solvation = -30673.380017 eV Core-core repulsion = 26674.110149 eV Total energy + Delta-G solvation = -3999.269869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.62388 -40.29362 -38.01571 -36.51217 -35.38727 -33.69801 -32.27277 -31.81513 -30.45696 -29.41188 -29.13199 -27.59681 -26.07919 -25.57031 -24.38260 -23.58599 -22.45335 -21.23418 -20.66165 -19.85019 -19.53691 -19.00581 -17.35447 -17.15397 -16.57245 -16.27241 -16.19272 -15.40174 -15.03549 -14.74482 -14.53689 -14.35258 -14.19901 -13.89883 -13.62879 -13.57501 -13.31422 -13.16475 -13.10111 -12.82497 -12.60024 -12.53026 -12.25699 -12.06532 -11.99042 -11.96838 -11.63068 -11.48585 -11.35862 -11.04624 -10.87668 -10.76659 -10.46556 -10.38676 -10.15612 -10.04333 -9.93163 -9.83780 -9.83213 -9.77019 -8.66101 -8.54849 -8.42920 -6.74095 -5.72496 -3.20862 1.75700 2.40651 2.45580 2.83381 2.86559 3.38158 3.44985 3.45822 3.87707 4.04978 4.14301 4.15195 4.47429 4.57652 4.61606 4.70269 4.76710 4.80053 4.87145 4.96906 5.02919 5.07328 5.13160 5.27665 5.31359 5.34317 5.43754 5.45942 5.47797 5.52363 5.63660 5.65450 5.70216 5.79623 5.84720 5.90909 6.03921 6.05429 6.16653 6.19929 6.38874 6.47733 6.54894 6.71020 6.73919 6.85961 6.89015 7.35815 7.46732 7.72952 7.80668 7.89172 8.02521 8.39878 9.23833 9.86664 10.35360 11.31716 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.002181 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.664944 B =12837.036459 C =13829.792980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.004 4.004 3 C -0.056 4.056 4 N -0.456 5.456 5 C 0.216 3.784 6 N -0.483 5.483 7 C -0.020 4.020 8 C -0.107 4.107 9 H 0.098 0.902 10 C 0.535 3.465 11 O -0.541 6.541 12 N -0.611 5.611 13 C 0.096 3.904 14 C -0.116 4.116 15 C -0.117 4.117 16 H 0.083 0.917 17 C 0.162 3.838 18 N -0.599 5.599 19 C 0.162 3.838 20 C -0.254 4.254 21 H 0.067 0.933 22 C 0.002 3.998 23 N -0.908 5.908 24 Si 0.904 3.096 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.109 3.891 29 C -0.116 4.116 30 C 0.105 3.895 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.174 0.826 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.050 0.950 43 H 0.029 0.971 44 H 0.039 0.961 45 H 0.000 1.000 46 H 0.252 0.748 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.096 0.904 51 H 0.095 0.905 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.244 22.787 7.176 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.189 4.189 4 N -0.140 5.140 5 C -0.047 4.047 6 N -0.202 5.202 7 C -0.059 4.059 8 C -0.130 4.130 9 H 0.116 0.884 10 C 0.322 3.678 11 O -0.419 6.419 12 N -0.344 5.344 13 C -0.027 4.027 14 C -0.154 4.154 15 C -0.140 4.140 16 H 0.101 0.899 17 C 0.034 3.966 18 N -0.322 5.322 19 C 0.017 3.983 20 C -0.384 4.384 21 H 0.085 0.915 22 C -0.196 4.196 23 N -0.553 5.553 24 Si 0.734 3.266 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.205 1.205 28 C -0.013 4.013 29 C -0.154 4.154 30 C -0.017 4.017 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.191 0.809 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.058 0.942 45 H 0.019 0.981 46 H 0.062 0.938 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.106 0.894 50 H 0.114 0.886 51 H 0.113 0.887 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.042 22.070 7.631 26.747 hybrid contribution -0.110 -0.034 -0.037 0.121 sum -13.152 22.036 7.594 26.762 Atomic orbital electron populations 1.20002 0.87656 1.02569 1.02077 1.20867 0.96487 0.88242 1.07770 1.22335 0.82805 1.00335 1.13411 1.45378 1.06560 1.07413 1.54599 1.23047 0.94601 0.81463 1.05550 1.69963 0.99602 1.30404 1.20230 1.20028 0.85742 0.95469 1.04709 1.21378 0.93364 0.95872 1.02340 0.88415 1.19848 0.85487 0.79324 0.83115 1.90714 1.60618 1.65094 1.25426 1.48612 1.31030 1.41252 1.13540 1.22216 0.98478 0.99732 0.82248 1.22618 0.98945 0.95958 0.97831 1.23260 1.02018 0.95308 0.93365 0.89852 1.20607 0.91414 0.91321 0.93245 1.43833 1.82917 1.04405 1.00995 1.20843 1.00374 0.92901 0.84142 1.19177 1.36822 0.82318 1.00073 0.91473 1.25047 0.98816 0.97891 0.97860 1.70057 1.42004 1.31011 1.12270 0.86268 0.78105 0.84413 0.77829 1.21521 1.21779 1.20478 1.22436 0.87529 0.90648 1.00717 1.21744 0.97916 0.94301 1.01480 1.22032 0.81952 0.94337 1.03402 0.91562 0.91476 0.91175 0.80925 0.87993 0.88512 0.91497 0.91828 0.89655 0.90812 0.94356 0.93138 0.95292 0.94229 0.98142 0.93782 0.91457 0.90686 0.89407 0.88601 0.88709 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.00 0.38 -0.14 16 2 C 0.00 -0.05 7.10 -82.65 -0.59 -0.64 16 3 C -0.06 -0.50 11.56 -16.70 -0.19 -0.70 16 4 N -0.46 -4.22 3.14 -113.68 -0.36 -4.58 16 5 C 0.22 2.49 7.65 -155.19 -1.19 1.30 16 6 N -0.48 -6.50 11.24 -6.83 -0.08 -6.58 16 7 C -0.02 -0.21 5.62 -27.51 -0.15 -0.36 16 8 C -0.11 -0.98 2.13 -91.49 -0.19 -1.18 16 9 H 0.10 0.77 7.22 -51.93 -0.37 0.40 16 10 C 0.53 6.68 6.90 -10.99 -0.08 6.60 16 11 O -0.54 -8.56 16.59 5.55 0.09 -8.47 16 12 N -0.61 -7.67 3.32 -170.38 -0.57 -8.24 16 13 C 0.10 1.05 6.08 -3.07 -0.02 1.03 16 14 C -0.12 -1.56 5.02 -24.90 -0.13 -1.69 16 15 C -0.12 -1.83 3.31 -88.34 -0.29 -2.12 16 16 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 17 C 0.16 3.06 5.17 -4.04 -0.02 3.04 16 18 N -0.60 -14.18 2.84 -181.12 -0.51 -14.69 16 19 C 0.16 3.76 8.59 59.85 0.51 4.27 16 20 C -0.25 -6.75 9.65 -15.06 -0.15 -6.89 16 21 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 22 C 0.00 0.06 5.13 -17.43 -0.09 -0.03 16 23 N -0.91 -26.07 10.66 55.49 0.59 -25.47 16 24 Si 0.90 21.65 29.57 -169.99 -5.03 16.62 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.11 1.52 6.36 -2.41 -0.02 1.50 16 29 C -0.12 -0.88 4.66 -26.52 -0.12 -1.01 16 30 C 0.10 0.63 6.98 -3.92 -0.03 0.61 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.10 1.04 7.78 -51.93 -0.40 0.63 16 36 H 0.10 1.06 8.11 -51.93 -0.42 0.64 16 37 H 0.07 0.68 7.78 -51.93 -0.40 0.28 16 38 H 0.06 0.58 7.99 -51.93 -0.41 0.16 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.07 0.99 7.15 -51.93 -0.37 0.62 16 41 H 0.04 0.68 8.04 -51.93 -0.42 0.26 16 42 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 43 H 0.03 0.74 7.33 -51.93 -0.38 0.36 16 44 H 0.04 1.00 7.35 -51.93 -0.38 0.61 16 45 H 0.00 0.00 6.16 -51.93 -0.32 -0.32 16 46 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 48 H 0.07 1.10 8.08 -51.93 -0.42 0.69 16 49 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 50 H 0.10 0.66 8.12 -51.93 -0.42 0.24 16 51 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 407.53 15.07 6.14 6.14 Total: -1.00 -33.43 407.53 -10.99 -44.42 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -8.92 Total: -2.76 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.36 Total: 3.60 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.92 Total: -59.56 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.43 -10.99 -44.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713750815.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.276 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds