Wall clock time and date at job start Wed Apr 1 2020 04:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34854 * 125.95960 * 2 1 4 4 N 1.36321 * 106.68682 * 179.97438 * 3 2 1 5 5 C 1.35422 * 107.39664 * 0.05379 * 4 3 2 6 6 N 1.30092 * 108.63230 * 359.93136 * 5 4 3 7 7 C 1.51069 * 123.99691 * 179.84101 * 5 4 3 8 8 C 1.53397 * 108.19808 * 344.14549 * 7 5 4 9 9 H 1.09000 * 109.51624 * 288.80039 * 8 7 5 10 10 C 1.50702 * 109.51090 * 168.70026 * 8 7 5 11 11 O 1.21274 * 120.00127 * 240.09931 * 10 8 7 12 12 N 1.34774 * 119.99861 * 60.09412 * 10 8 7 13 13 C 1.46500 * 120.00196 * 185.20949 * 12 10 8 14 14 C 1.52999 * 109.47388 * 174.51934 * 13 12 10 15 15 C 1.52992 * 109.47075 * 54.51561 * 13 12 10 16 16 N 1.46502 * 109.47491 * 60.00344 * 15 13 12 17 17 C 1.36927 * 120.00294 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99855 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00061 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00109 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00240 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47381 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.46959 * 60.00248 * 21 19 17 24 24 H 1.48508 * 109.47234 * 300.00346 * 21 19 17 25 25 C 1.53002 * 109.46759 * 294.51883 * 13 12 10 26 26 C 1.53001 * 117.50231 * 2.31975 * 25 13 12 27 27 C 1.53005 * 117.49686 * 293.66238 * 25 13 12 28 28 C 1.53149 * 109.27595 * 48.75093 * 8 7 5 29 29 C 1.46472 * 127.77866 * 180.08323 * 4 3 2 30 30 H 1.09002 * 109.47115 * 90.00004 * 1 2 3 31 31 H 1.08995 * 109.46738 * 209.99859 * 1 2 3 32 32 H 1.08998 * 109.46847 * 329.99780 * 1 2 3 33 33 H 1.07991 * 126.66065 * 359.94444 * 3 2 1 34 34 H 1.08998 * 109.76148 * 224.45244 * 7 5 4 35 35 H 1.08993 * 109.68278 * 103.80088 * 7 5 4 36 36 H 0.97007 * 119.99688 * 5.20950 * 12 10 8 37 37 H 1.08997 * 109.46887 * 299.99787 * 14 13 12 38 38 H 1.09000 * 109.47128 * 59.99305 * 14 13 12 39 39 H 1.09000 * 109.47253 * 179.97438 * 14 13 12 40 40 H 1.09006 * 109.47235 * 300.00106 * 15 13 12 41 41 H 1.09003 * 109.46915 * 180.02562 * 15 13 12 42 42 H 0.96996 * 119.99298 * 359.97438 * 16 15 13 43 43 H 0.97006 * 119.99836 * 359.97438 * 20 19 17 44 44 H 1.08995 * 115.55398 * 147.99665 * 25 13 12 45 45 H 1.08995 * 117.49672 * 0.02562 * 26 25 13 46 46 H 1.09001 * 117.49646 * 145.02005 * 26 25 13 47 47 H 1.09003 * 117.50103 * 214.97717 * 27 25 13 48 48 H 1.09000 * 117.49873 * 359.97438 * 27 25 13 49 49 H 1.08998 * 109.47169 * 50.54650 * 28 8 7 50 50 H 1.09000 * 109.46673 * 170.53207 * 28 8 7 51 51 H 1.08996 * 109.58269 * 43.05629 * 29 4 3 52 52 H 1.08999 * 109.69982 * 282.70895 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5858 0.6416 0.0006 5 6 3.5414 -0.7119 -0.0003 6 7 2.2957 -1.0870 0.0001 7 6 4.7656 -1.5971 -0.0035 8 6 5.9744 -0.7417 -0.4035 9 1 5.9070 -0.4883 -1.4615 10 6 7.2434 -1.5142 -0.1508 11 8 8.0743 -1.0804 0.6187 12 7 7.4549 -2.6872 -0.7799 13 6 8.6327 -3.4935 -0.4499 14 6 8.5643 -4.8263 -1.1981 15 6 8.6653 -3.7556 1.0571 16 7 7.4532 -4.4766 1.4537 17 6 7.2607 -4.8232 2.7644 18 1 8.0027 -4.5654 3.5057 19 6 6.1121 -5.5059 3.1403 20 7 5.2081 -5.8205 2.2368 21 14 5.8497 -5.9794 4.9281 22 1 4.5562 -6.6956 5.0659 23 1 5.8294 -4.7540 5.7668 24 1 6.9554 -6.8654 5.3730 25 6 9.8985 -2.7405 -0.8640 26 6 9.7256 -1.3417 -1.4594 27 6 10.1275 -2.5127 -2.3596 28 6 5.9829 0.5428 0.4304 29 6 4.8149 1.4382 0.0025 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9764 2.1222 -0.0008 34 1 4.6336 -2.4059 -0.7222 35 1 4.9217 -2.0113 0.9925 36 1 6.8272 -2.9975 -1.4512 37 1 7.6625 -5.3627 -0.9030 38 1 8.5410 -4.6395 -2.2717 39 1 9.4408 -5.4260 -0.9529 40 1 8.7140 -2.8061 1.5901 41 1 9.5419 -4.3552 1.3026 42 1 6.7871 -4.7085 0.7879 43 1 5.3445 -5.5750 1.3083 44 1 10.7757 -2.9176 -0.2419 45 1 8.7100 -0.9578 -1.5557 46 1 10.4892 -0.5988 -1.2291 47 1 11.1555 -2.5396 -2.7212 48 1 9.3766 -2.8997 -3.0484 49 1 5.8801 0.2914 1.4860 50 1 6.9227 1.0720 0.2729 51 1 4.7128 2.2658 0.7044 52 1 5.0013 1.8286 -0.9980 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715114681.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:57 Heat of formation + Delta-G solvation = 67.331858 kcal Electronic energy + Delta-G solvation = -32402.974746 eV Core-core repulsion = 28404.766357 eV Total energy + Delta-G solvation = -3998.208389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.31428 -40.55000 -37.84007 -36.05303 -35.15716 -33.72280 -33.18723 -31.53295 -31.32525 -29.49563 -28.77987 -27.19935 -25.87978 -24.14960 -23.62361 -23.11682 -22.17284 -21.55613 -20.70023 -20.04147 -19.10820 -19.04677 -17.35496 -16.94719 -16.87388 -16.14671 -15.88236 -15.67569 -14.89580 -14.37173 -14.32368 -14.16249 -13.95472 -13.83906 -13.67285 -13.58569 -13.37702 -12.94710 -12.82439 -12.50937 -12.41108 -12.29950 -12.17855 -12.01989 -11.82695 -11.65580 -11.34014 -11.24002 -11.16256 -11.11171 -10.92509 -10.65748 -10.43625 -10.23303 -9.96410 -9.91309 -9.78749 -9.44758 -9.31460 -9.14640 -8.75475 -8.64232 -8.11714 -6.87155 -6.00470 -2.99080 2.07418 2.76153 2.83584 3.18845 3.31962 3.57302 3.60949 3.78416 3.95464 4.21310 4.38732 4.49591 4.54219 4.68283 4.83646 4.87803 4.96477 5.01937 5.04859 5.08355 5.09692 5.24598 5.29893 5.35640 5.36987 5.50004 5.63195 5.65827 5.69200 5.70396 5.72025 5.73450 5.85131 5.87048 5.94174 5.96900 6.07816 6.09018 6.13335 6.16498 6.21463 6.30107 6.37262 6.50185 6.52631 6.84726 6.86213 7.06751 7.22224 7.77071 7.90989 8.24452 8.50854 8.84674 9.32255 10.18365 10.34338 11.47475 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007281 B = 0.004735 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3844.791697 B = 5911.533313 C = 8737.856288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.004 4.004 3 C -0.062 4.062 4 N -0.458 5.458 5 C 0.223 3.777 6 N -0.480 5.480 7 C -0.023 4.023 8 C -0.111 4.111 9 H 0.096 0.904 10 C 0.531 3.469 11 O -0.518 6.518 12 N -0.715 5.715 13 C 0.199 3.801 14 C -0.147 4.147 15 C 0.149 3.851 16 N -0.736 5.736 17 C -0.324 4.324 18 H 0.061 0.939 19 C -0.044 4.044 20 N -0.942 5.942 21 Si 1.076 2.924 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.297 1.297 25 C -0.142 4.142 26 C -0.156 4.156 27 C -0.186 4.186 28 C -0.115 4.115 29 C 0.106 3.894 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.171 0.829 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.395 0.605 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.021 0.979 42 H 0.365 0.635 43 H 0.253 0.747 44 H 0.107 0.893 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.099 0.901 51 H 0.091 0.909 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 15.338 -12.120 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.134 4.134 3 C -0.195 4.195 4 N -0.142 5.142 5 C -0.040 4.040 6 N -0.199 5.199 7 C -0.062 4.062 8 C -0.133 4.133 9 H 0.114 0.886 10 C 0.317 3.683 11 O -0.394 6.394 12 N -0.366 5.366 13 C 0.113 3.887 14 C -0.205 4.205 15 C 0.021 3.979 16 N -0.382 5.382 17 C -0.456 4.456 18 H 0.079 0.921 19 C -0.242 4.242 20 N -0.588 5.588 21 Si 0.907 3.093 22 H -0.211 1.211 23 H -0.225 1.225 24 H -0.224 1.224 25 C -0.162 4.162 26 C -0.193 4.193 27 C -0.223 4.223 28 C -0.153 4.153 29 C -0.017 4.017 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.188 0.812 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.229 0.771 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.039 0.961 42 H 0.198 0.802 43 H 0.064 0.936 44 H 0.125 0.875 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.104 0.896 50 H 0.117 0.883 51 H 0.110 0.890 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.759 14.241 -10.288 17.585 hybrid contribution 0.892 1.480 -1.496 2.286 sum 1.651 15.721 -11.784 19.716 Atomic orbital electron populations 1.19990 0.87868 1.02523 1.01854 1.20812 0.96451 0.88366 1.07747 1.22220 0.82981 1.00165 1.14127 1.45382 1.06421 1.07438 1.54909 1.23163 0.94773 0.81322 1.04738 1.70019 0.99674 1.30149 1.20066 1.20132 0.85491 0.94925 1.05691 1.21436 0.93975 0.96137 1.01737 0.88631 1.19877 0.86972 0.81215 0.80245 1.90692 1.45562 1.68055 1.35064 1.46016 1.26762 1.21352 1.42486 1.20091 0.82687 0.89157 0.96745 1.21978 1.03885 0.95767 0.98851 1.21003 0.90486 0.96485 0.89970 1.42234 1.20396 1.68612 1.06989 1.19977 1.06001 1.34158 0.85429 0.92132 1.25640 0.93142 0.99078 1.06325 1.70912 1.36027 1.49841 1.02047 0.83293 0.75799 0.75901 0.74278 1.21069 1.22477 1.22423 1.22510 0.99219 0.99299 0.95124 1.22886 1.02132 0.91214 1.03104 1.22994 1.01763 1.04166 0.93417 1.21713 0.97703 0.94399 1.01481 1.22002 0.82262 0.94431 1.02956 0.91719 0.91126 0.91652 0.81171 0.88335 0.87586 0.77138 0.91145 0.92751 0.90958 0.93163 0.96119 0.80168 0.93630 0.87521 0.89147 0.89613 0.89389 0.89210 0.89645 0.88267 0.89020 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.42 36.01 0.38 -0.35 16 2 C 0.00 -0.07 7.10 -82.71 -0.59 -0.65 16 3 C -0.06 -0.77 11.55 -16.76 -0.19 -0.97 16 4 N -0.46 -5.90 3.13 -113.75 -0.36 -6.25 16 5 C 0.22 3.54 7.65 -155.23 -1.19 2.35 16 6 N -0.48 -8.59 11.24 -6.87 -0.08 -8.66 16 7 C -0.02 -0.35 5.52 -27.50 -0.15 -0.50 16 8 C -0.11 -1.36 2.54 -91.49 -0.23 -1.59 16 9 H 0.10 0.95 8.12 -51.93 -0.42 0.52 16 10 C 0.53 7.87 4.40 -10.99 -0.05 7.82 16 11 O -0.52 -9.25 11.77 5.56 0.07 -9.18 16 12 N -0.71 -9.97 4.07 -47.61 -0.19 -10.16 16 13 C 0.20 3.07 0.55 -131.82 -0.07 2.99 16 14 C -0.15 -2.09 8.18 37.16 0.30 -1.78 16 15 C 0.15 3.08 4.83 -4.04 -0.02 3.06 16 16 N -0.74 -18.09 5.17 -59.91 -0.31 -18.40 16 17 C -0.32 -9.26 9.99 -15.06 -0.15 -9.41 16 18 H 0.06 1.75 7.83 -52.48 -0.41 1.34 16 19 C -0.04 -1.30 5.50 -17.43 -0.10 -1.40 16 20 N -0.94 -29.05 13.70 55.49 0.76 -28.29 16 21 Si 1.08 26.78 29.92 -169.99 -5.09 21.69 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 23 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 25 C -0.14 -1.96 4.81 -90.62 -0.44 -2.39 16 26 C -0.16 -1.98 8.28 -26.69 -0.22 -2.20 16 27 C -0.19 -2.08 9.68 -26.69 -0.26 -2.34 16 28 C -0.11 -1.30 4.67 -26.52 -0.12 -1.42 16 29 C 0.11 0.99 6.98 -3.92 -0.03 0.96 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.10 1.42 8.09 -51.93 -0.42 1.00 16 35 H 0.11 2.01 8.11 -51.93 -0.42 1.59 16 36 H 0.39 4.69 8.41 -40.82 -0.34 4.35 16 37 H 0.07 1.14 6.86 -51.93 -0.36 0.79 16 38 H 0.05 0.62 6.92 -51.93 -0.36 0.26 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.17 5.96 -51.93 -0.31 0.86 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.36 8.93 5.18 -40.82 -0.21 8.72 16 43 H 0.25 7.59 6.78 -40.82 -0.28 7.31 16 44 H 0.11 1.52 8.06 -51.93 -0.42 1.10 16 45 H 0.09 1.17 5.12 -51.93 -0.27 0.90 16 46 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.09 0.94 7.21 -51.93 -0.37 0.57 16 49 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 50 H 0.10 1.02 7.79 -51.93 -0.40 0.62 16 51 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -35.81 402.88 -10.69 -46.50 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -8.44 Total: 14.50 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -3.13 Total: -7.81 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -0.18 Total: -71.77 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -5.09 Total: 21.69 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.81 -10.69 -46.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715114681.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.829 kcal (2) G-P(sol) polarization free energy of solvation -35.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds