Wall clock time and date at job start Wed Apr 1 2020 04:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34854 * 125.95960 * 2 1 4 4 N 1.36321 * 106.68682 * 179.97438 * 3 2 1 5 5 C 1.35422 * 107.39664 * 0.05379 * 4 3 2 6 6 N 1.30092 * 108.63230 * 359.93136 * 5 4 3 7 7 C 1.51069 * 123.99691 * 179.84101 * 5 4 3 8 8 C 1.53397 * 108.19808 * 344.14549 * 7 5 4 9 9 H 1.09000 * 109.51624 * 288.80039 * 8 7 5 10 10 C 1.50702 * 109.51090 * 168.70026 * 8 7 5 11 11 O 1.21274 * 120.00127 * 240.09931 * 10 8 7 12 12 N 1.34774 * 119.99861 * 60.09412 * 10 8 7 13 13 C 1.46500 * 120.00196 * 185.20949 * 12 10 8 14 14 C 1.52999 * 109.47388 * 174.51934 * 13 12 10 15 15 C 1.52992 * 109.47075 * 54.51561 * 13 12 10 16 16 N 1.46502 * 109.47491 * 60.00344 * 15 13 12 17 17 C 1.36927 * 120.00294 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99855 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00061 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00109 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00240 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47381 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.46959 * 60.00248 * 21 19 17 24 24 H 1.48508 * 109.47234 * 300.00346 * 21 19 17 25 25 C 1.53002 * 109.46759 * 294.51883 * 13 12 10 26 26 C 1.53001 * 117.50231 * 2.31975 * 25 13 12 27 27 C 1.53005 * 117.49686 * 293.66238 * 25 13 12 28 28 C 1.53149 * 109.27595 * 48.75093 * 8 7 5 29 29 C 1.46472 * 127.77866 * 180.08323 * 4 3 2 30 30 H 1.09002 * 109.47115 * 90.00004 * 1 2 3 31 31 H 1.08995 * 109.46738 * 209.99859 * 1 2 3 32 32 H 1.08998 * 109.46847 * 329.99780 * 1 2 3 33 33 H 1.07991 * 126.66065 * 359.94444 * 3 2 1 34 34 H 1.08998 * 109.76148 * 224.45244 * 7 5 4 35 35 H 1.08993 * 109.68278 * 103.80088 * 7 5 4 36 36 H 0.97007 * 119.99688 * 5.20950 * 12 10 8 37 37 H 1.08997 * 109.46887 * 299.99787 * 14 13 12 38 38 H 1.09000 * 109.47128 * 59.99305 * 14 13 12 39 39 H 1.09000 * 109.47253 * 179.97438 * 14 13 12 40 40 H 1.09006 * 109.47235 * 300.00106 * 15 13 12 41 41 H 1.09003 * 109.46915 * 180.02562 * 15 13 12 42 42 H 0.96996 * 119.99298 * 359.97438 * 16 15 13 43 43 H 0.97006 * 119.99836 * 359.97438 * 20 19 17 44 44 H 1.08995 * 115.55398 * 147.99665 * 25 13 12 45 45 H 1.08995 * 117.49672 * 0.02562 * 26 25 13 46 46 H 1.09001 * 117.49646 * 145.02005 * 26 25 13 47 47 H 1.09003 * 117.50103 * 214.97717 * 27 25 13 48 48 H 1.09000 * 117.49873 * 359.97438 * 27 25 13 49 49 H 1.08998 * 109.47169 * 50.54650 * 28 8 7 50 50 H 1.09000 * 109.46673 * 170.53207 * 28 8 7 51 51 H 1.08996 * 109.58269 * 43.05629 * 29 4 3 52 52 H 1.08999 * 109.69982 * 282.70895 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5858 0.6416 0.0006 5 6 3.5414 -0.7119 -0.0003 6 7 2.2957 -1.0870 0.0001 7 6 4.7656 -1.5971 -0.0035 8 6 5.9744 -0.7417 -0.4035 9 1 5.9070 -0.4883 -1.4615 10 6 7.2434 -1.5142 -0.1508 11 8 8.0743 -1.0804 0.6187 12 7 7.4549 -2.6872 -0.7799 13 6 8.6327 -3.4935 -0.4499 14 6 8.5643 -4.8263 -1.1981 15 6 8.6653 -3.7556 1.0571 16 7 7.4532 -4.4766 1.4537 17 6 7.2607 -4.8232 2.7644 18 1 8.0027 -4.5654 3.5057 19 6 6.1121 -5.5059 3.1403 20 7 5.2081 -5.8205 2.2368 21 14 5.8497 -5.9794 4.9281 22 1 4.5562 -6.6956 5.0659 23 1 5.8294 -4.7540 5.7668 24 1 6.9554 -6.8654 5.3730 25 6 9.8985 -2.7405 -0.8640 26 6 9.7256 -1.3417 -1.4594 27 6 10.1275 -2.5127 -2.3596 28 6 5.9829 0.5428 0.4304 29 6 4.8149 1.4382 0.0025 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9764 2.1222 -0.0008 34 1 4.6336 -2.4059 -0.7222 35 1 4.9217 -2.0113 0.9925 36 1 6.8272 -2.9975 -1.4512 37 1 7.6625 -5.3627 -0.9030 38 1 8.5410 -4.6395 -2.2717 39 1 9.4408 -5.4260 -0.9529 40 1 8.7140 -2.8061 1.5901 41 1 9.5419 -4.3552 1.3026 42 1 6.7871 -4.7085 0.7879 43 1 5.3445 -5.5750 1.3083 44 1 10.7757 -2.9176 -0.2419 45 1 8.7100 -0.9578 -1.5557 46 1 10.4892 -0.5988 -1.2291 47 1 11.1555 -2.5396 -2.7212 48 1 9.3766 -2.8997 -3.0484 49 1 5.8801 0.2914 1.4860 50 1 6.9227 1.0720 0.2729 51 1 4.7128 2.2658 0.7044 52 1 5.0013 1.8286 -0.9980 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715114681.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:56 Heat of formation + Delta-G solvation = 44.267272 kcal Electronic energy + Delta-G solvation = -32403.974902 eV Core-core repulsion = 28404.766357 eV Total energy + Delta-G solvation = -3999.208545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.35963 -41.76710 -38.99768 -37.13591 -36.84262 -35.13907 -34.42091 -33.00864 -32.45802 -31.11406 -29.86076 -28.18186 -27.47065 -25.57612 -25.14153 -24.22404 -23.12192 -23.06968 -21.80365 -21.12323 -20.32646 -20.14123 -19.40319 -18.12045 -17.83825 -17.49732 -17.13680 -16.85966 -15.99892 -15.90427 -15.73855 -15.41773 -15.29354 -15.13983 -14.92007 -14.75676 -14.67700 -14.43043 -13.89464 -13.75763 -13.63369 -13.42756 -13.39077 -13.14097 -12.81489 -12.80335 -12.65566 -12.62962 -12.42537 -12.28831 -12.17104 -12.15197 -12.04194 -11.92467 -11.39073 -11.23782 -11.05570 -10.94511 -10.90294 -10.49959 -10.42237 -9.95803 -9.14316 -9.02467 -8.36848 -5.28664 1.04939 1.52699 1.62033 1.62433 1.79147 1.83622 2.06739 2.17858 2.67949 2.94388 3.16941 3.40584 3.46319 3.49298 3.54519 3.59853 3.91999 3.94074 3.99987 4.03491 4.07672 4.10042 4.21659 4.25876 4.32382 4.35279 4.42801 4.46635 4.51784 4.60037 4.72428 4.79062 4.80955 4.82234 4.84378 4.89873 4.90964 5.01450 5.04932 5.06629 5.13754 5.15492 5.25895 5.26686 5.30368 5.35689 5.57079 5.67553 5.88081 6.22050 6.53128 6.60599 7.12849 7.17237 7.32997 8.03415 8.16052 9.14821 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007281 B = 0.004735 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3844.791697 B = 5911.533313 C = 8737.856288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.042 4.042 3 C -0.041 4.041 4 N -0.452 5.452 5 C 0.194 3.806 6 N -0.531 5.531 7 C -0.012 4.012 8 C -0.097 4.097 9 H 0.132 0.868 10 C 0.528 3.472 11 O -0.551 6.551 12 N -0.709 5.709 13 C 0.210 3.790 14 C -0.141 4.141 15 C 0.150 3.850 16 N -0.739 5.739 17 C -0.330 4.330 18 H 0.052 0.948 19 C -0.096 4.096 20 N -0.968 5.968 21 Si 1.119 2.881 22 H -0.290 1.290 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.164 4.164 26 C -0.158 4.158 27 C -0.154 4.154 28 C -0.111 4.111 29 C 0.107 3.893 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.216 0.784 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.407 0.593 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.024 0.976 41 H 0.011 0.989 42 H 0.364 0.636 43 H 0.245 0.755 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.106 0.894 48 H 0.104 0.896 49 H 0.049 0.951 50 H 0.114 0.886 51 H 0.117 0.883 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 17.850 -14.146 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.170 4.170 3 C -0.175 4.175 4 N -0.135 5.135 5 C -0.069 4.069 6 N -0.251 5.251 7 C -0.051 4.051 8 C -0.119 4.119 9 H 0.150 0.850 10 C 0.315 3.685 11 O -0.429 6.429 12 N -0.361 5.361 13 C 0.123 3.877 14 C -0.198 4.198 15 C 0.023 3.977 16 N -0.384 5.384 17 C -0.462 4.462 18 H 0.070 0.930 19 C -0.289 4.289 20 N -0.616 5.616 21 Si 0.945 3.055 22 H -0.216 1.216 23 H -0.214 1.214 24 H -0.202 1.202 25 C -0.184 4.184 26 C -0.196 4.196 27 C -0.191 4.191 28 C -0.149 4.149 29 C -0.014 4.014 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.232 0.768 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.242 0.758 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.042 0.958 41 H 0.029 0.971 42 H 0.197 0.803 43 H 0.055 0.945 44 H 0.114 0.886 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.124 0.876 48 H 0.122 0.878 49 H 0.068 0.932 50 H 0.132 0.868 51 H 0.135 0.865 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.128 16.768 -12.347 20.854 hybrid contribution 0.821 0.748 -0.825 1.383 sum 1.948 17.515 -13.172 22.002 Atomic orbital electron populations 1.20053 0.86103 1.02941 1.02735 1.21453 0.97983 0.88416 1.09168 1.22886 0.82127 1.01443 1.10996 1.45602 1.07853 1.06585 1.53450 1.23011 0.94219 0.82874 1.06773 1.69929 1.01171 1.32696 1.21325 1.19868 0.87181 0.95555 1.02527 1.21398 0.90894 0.95630 1.03957 0.84996 1.20348 0.87393 0.81305 0.79497 1.90678 1.46916 1.68948 1.36312 1.45966 1.26643 1.20908 1.42559 1.19828 0.84343 0.90536 0.92965 1.21927 1.02522 0.94529 1.00829 1.21032 0.88375 0.94234 0.94079 1.42283 1.21594 1.68728 1.05798 1.20244 1.05593 1.33371 0.87004 0.93024 1.26924 0.93124 0.99464 1.09340 1.71001 1.37038 1.51482 1.02085 0.82737 0.75970 0.76245 0.70577 1.21621 1.21376 1.20232 1.22357 0.97801 1.00655 0.97608 1.22903 1.02237 0.90951 1.03463 1.23080 1.03214 1.01515 0.91303 1.21668 0.99648 0.94400 0.99180 1.22296 0.79665 0.93724 1.05705 0.90576 0.93035 0.88860 0.76767 0.88556 0.92922 0.75776 0.93674 0.89132 0.91059 0.95793 0.97075 0.80259 0.94470 0.88567 0.89279 0.89475 0.87572 0.87766 0.93191 0.86757 0.86484 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.30 10.42 71.24 0.74 -0.56 16 2 C -0.04 -1.19 7.10 41.41 0.29 -0.90 16 3 C -0.04 -0.91 11.55 83.22 0.96 0.06 16 4 N -0.45 -10.76 3.13 -513.79 -1.61 -12.37 16 5 C 0.19 6.25 7.65 138.24 1.06 7.31 16 6 N -0.53 -19.55 11.24 -175.65 -1.98 -21.53 16 7 C -0.01 -0.38 5.52 30.10 0.17 -0.21 16 8 C -0.10 -2.33 2.54 -11.36 -0.03 -2.36 16 9 H 0.13 2.25 8.12 -2.39 -0.02 2.23 16 10 C 0.53 15.79 4.40 87.66 0.39 16.17 16 11 O -0.55 -20.14 11.77 -3.01 -0.04 -20.18 16 12 N -0.71 -19.78 4.07 -422.94 -1.72 -21.51 16 13 C 0.21 6.49 0.55 3.60 0.00 6.49 16 14 C -0.14 -3.90 8.18 71.98 0.59 -3.31 16 15 C 0.15 6.52 4.83 86.38 0.42 6.93 16 16 N -0.74 -38.06 5.17 -343.46 -1.78 -39.84 16 17 C -0.33 -19.58 9.99 84.03 0.84 -18.74 16 18 H 0.05 3.10 7.83 -2.91 -0.02 3.07 16 19 C -0.10 -5.81 5.50 84.86 0.47 -5.34 16 20 N -0.97 -61.80 13.70 21.65 0.30 -61.50 16 21 Si 1.12 55.13 29.92 68.60 2.05 57.18 16 22 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 25 C -0.16 -4.38 4.81 -10.79 -0.05 -4.43 16 26 C -0.16 -3.71 8.28 30.62 0.25 -3.46 16 27 C -0.15 -2.95 9.68 30.62 0.30 -2.65 16 28 C -0.11 -2.39 4.67 30.73 0.14 -2.24 16 29 C 0.11 1.64 6.98 86.47 0.60 2.24 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.22 2.62 8.06 -2.92 -0.02 2.60 16 34 H 0.10 2.96 8.09 -2.39 -0.02 2.95 16 35 H 0.05 2.21 8.11 -2.39 -0.02 2.19 16 36 H 0.41 9.44 8.41 -92.70 -0.78 8.66 16 37 H 0.04 1.48 6.86 -2.39 -0.02 1.47 16 38 H 0.09 1.84 6.92 -2.39 -0.02 1.83 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.02 1.18 5.96 -2.38 -0.01 1.17 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.36 18.78 5.18 -92.71 -0.48 18.30 16 43 H 0.24 15.41 6.78 -92.70 -0.63 14.79 16 44 H 0.10 2.75 8.06 -2.39 -0.02 2.73 16 45 H 0.09 2.11 5.12 -2.39 -0.01 2.10 16 46 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.10 1.73 7.21 -2.39 -0.02 1.71 16 49 H 0.05 1.43 8.12 -2.39 -0.02 1.41 16 50 H 0.11 2.14 7.79 -2.39 -0.02 2.12 16 51 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -83.58 402.88 2.19 -81.39 By element: Atomic # 1 Polarization: 43.52 SS G_CDS: -0.18 Total: 43.34 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 7.14 Total: -5.00 kcal Atomic # 7 Polarization: -149.96 SS G_CDS: -6.79 Total: -156.75 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.04 Total: -20.18 kcal Atomic # 14 Polarization: 55.13 SS G_CDS: 2.05 Total: 57.18 kcal Total: -83.58 2.19 -81.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715114681.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.662 kcal (2) G-P(sol) polarization free energy of solvation -83.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds