Wall clock time and date at job start Wed Apr 1 2020 04:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34854 * 125.96692 * 2 1 4 4 N 1.36312 * 106.68893 * 179.97438 * 3 2 1 5 5 C 1.35422 * 107.39905 * 0.04254 * 4 3 2 6 6 N 1.30089 * 108.62762 * 359.94013 * 5 4 3 7 7 C 1.51039 * 123.97969 * 179.86843 * 5 4 3 8 8 C 1.53398 * 108.20595 * 344.01264 * 7 5 4 9 9 H 1.08995 * 109.55008 * 288.89769 * 8 7 5 10 10 C 1.50699 * 109.50907 * 168.77748 * 8 7 5 11 11 O 1.21288 * 120.00089 * 240.24120 * 10 8 7 12 12 N 1.34772 * 120.00274 * 59.96965 * 10 8 7 13 13 C 1.46495 * 120.00231 * 175.27752 * 12 10 8 14 14 C 1.52998 * 109.47100 * 304.27404 * 13 12 10 15 15 C 1.53001 * 109.47558 * 64.28133 * 13 12 10 16 16 N 1.46497 * 109.47060 * 59.99747 * 15 13 12 17 17 C 1.36940 * 119.99735 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00293 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99814 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00202 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00255 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46586 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47436 * 119.99210 * 21 19 17 24 24 H 1.48494 * 109.46977 * 239.99919 * 21 19 17 25 25 C 1.53008 * 109.47025 * 184.27849 * 13 12 10 26 26 C 1.52997 * 117.49644 * 132.69751 * 25 13 12 27 27 C 1.53001 * 117.49651 * 64.03757 * 25 13 12 28 28 C 1.53159 * 109.23344 * 48.85101 * 8 7 5 29 29 C 1.46477 * 127.77361 * 180.02562 * 4 3 2 30 30 H 1.08995 * 109.47412 * 269.99824 * 1 2 3 31 31 H 1.08998 * 109.47043 * 30.00051 * 1 2 3 32 32 H 1.09000 * 109.47081 * 149.99819 * 1 2 3 33 33 H 1.08000 * 126.65308 * 359.97129 * 3 2 1 34 34 H 1.09008 * 109.71561 * 224.33849 * 7 5 4 35 35 H 1.08997 * 109.71864 * 103.69797 * 7 5 4 36 36 H 0.97005 * 119.99517 * 355.27019 * 12 10 8 37 37 H 1.09004 * 109.46923 * 60.00776 * 14 13 12 38 38 H 1.09005 * 109.47258 * 179.97438 * 14 13 12 39 39 H 1.08994 * 109.47763 * 300.00385 * 14 13 12 40 40 H 1.08997 * 109.47302 * 180.02562 * 15 13 12 41 41 H 1.09005 * 109.46623 * 299.99915 * 15 13 12 42 42 H 0.96999 * 120.00170 * 359.97438 * 16 15 13 43 43 H 0.97002 * 120.00135 * 179.97438 * 20 19 17 44 44 H 1.08998 * 115.55116 * 278.36176 * 25 13 12 45 45 H 1.09001 * 117.50461 * 359.97438 * 26 25 13 46 46 H 1.09003 * 117.50252 * 145.02069 * 26 25 13 47 47 H 1.08998 * 117.49536 * 214.97965 * 27 25 13 48 48 H 1.08994 * 117.49910 * 359.97438 * 27 25 13 49 49 H 1.09002 * 109.46206 * 50.52504 * 28 8 7 50 50 H 1.09001 * 109.46179 * 170.50329 * 28 8 7 51 51 H 1.08996 * 109.57853 * 43.12452 * 29 4 3 52 52 H 1.08991 * 109.69401 * 282.78082 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6414 0.0006 5 6 3.5413 -0.7121 0.0000 6 7 2.2956 -1.0870 0.0003 7 6 4.7654 -1.5968 -0.0026 8 6 5.9738 -0.7421 -0.4055 9 1 5.9051 -0.4891 -1.4635 10 6 7.2430 -1.5146 -0.1541 11 8 8.0742 -1.0814 0.6157 12 7 7.4521 -2.6895 -0.7803 13 6 8.7284 -3.3898 -0.6168 14 6 9.8755 -2.4590 -1.0151 15 6 8.8963 -3.8098 0.8448 16 7 7.7979 -4.7011 1.2260 17 6 7.7367 -5.2074 2.4969 18 1 8.4983 -4.9500 3.2181 19 6 6.6963 -6.0523 2.8580 20 7 5.7683 -6.3665 1.9790 21 14 6.6130 -6.7436 4.5914 22 1 7.7671 -6.2423 5.3801 23 1 5.3471 -6.3116 5.2364 24 1 6.6591 -8.2268 4.5355 25 6 8.7465 -4.6322 -1.5097 26 6 9.9924 -4.8690 -2.3655 27 6 8.6865 -4.4155 -3.0231 28 6 5.9833 0.5428 0.4281 29 6 4.8149 1.4381 0.0013 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.9764 2.1221 -0.0004 34 1 4.6323 -2.4067 -0.7199 35 1 4.9228 -2.0097 0.9938 36 1 6.7573 -3.0715 -1.3392 37 1 9.8627 -1.5739 -0.3789 38 1 10.8252 -2.9799 -0.8930 39 1 9.7560 -2.1598 -2.0563 40 1 9.8461 -4.3304 0.9665 41 1 8.8834 -2.9246 1.4809 42 1 7.1136 -4.9320 0.5784 43 1 5.0415 -6.9573 2.2312 44 1 8.2391 -5.5085 -1.1062 45 1 10.7990 -4.1395 -2.2929 46 1 10.3044 -5.9011 -2.5255 47 1 8.1400 -5.1494 -3.6153 48 1 8.6338 -3.3879 -3.3826 49 1 5.8819 0.2915 1.4839 50 1 6.9231 1.0717 0.2693 51 1 4.7134 2.2656 0.7034 52 1 5.0002 1.8285 -0.9992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715114682.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:01 Heat of formation + Delta-G solvation = 58.949729 kcal Electronic energy + Delta-G solvation = -31886.259998 eV Core-core repulsion = 27887.688133 eV Total energy + Delta-G solvation = -3998.571866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.33831 -40.25022 -38.17330 -36.25151 -34.64226 -33.65698 -33.20228 -31.55519 -31.11408 -29.73695 -28.77983 -27.19590 -25.86740 -24.23984 -23.79721 -22.76259 -22.28559 -22.04851 -20.53798 -19.78344 -19.07691 -18.81074 -17.22282 -17.12680 -16.87550 -15.90149 -15.74457 -15.21755 -15.09482 -14.52444 -14.44865 -14.16606 -14.03078 -13.74159 -13.69280 -13.60452 -13.18068 -12.95663 -12.71752 -12.52579 -12.37374 -12.29265 -12.08603 -11.93213 -11.85096 -11.65779 -11.41761 -11.25126 -11.16253 -11.04659 -10.80663 -10.78674 -10.71193 -10.18857 -10.02840 -9.83279 -9.81757 -9.63339 -9.47822 -9.31177 -8.75459 -8.60172 -8.14799 -6.80403 -5.69655 -2.96005 2.04626 2.73897 2.87376 3.15251 3.28609 3.48353 3.54613 3.56366 4.05465 4.21178 4.38267 4.49423 4.55481 4.65945 4.79106 4.86711 4.98270 5.01704 5.08419 5.10651 5.17990 5.22538 5.28367 5.33801 5.37251 5.46558 5.65644 5.66096 5.66923 5.69978 5.73383 5.79551 5.82302 5.94777 5.96938 6.04146 6.05219 6.09665 6.21682 6.25281 6.29120 6.34632 6.42779 6.56823 6.69178 6.82736 6.91031 7.11657 7.19437 7.78800 7.87056 8.20804 8.49744 8.54331 9.61468 10.18997 10.54809 11.53313 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007834 B = 0.003967 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3573.455902 B = 7056.548550 C = 9212.278975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.005 4.005 3 C -0.062 4.062 4 N -0.458 5.458 5 C 0.223 3.777 6 N -0.482 5.482 7 C -0.026 4.026 8 C -0.109 4.109 9 H 0.098 0.902 10 C 0.529 3.471 11 O -0.532 6.532 12 N -0.706 5.706 13 C 0.202 3.798 14 C -0.164 4.164 15 C 0.145 3.855 16 N -0.725 5.725 17 C -0.232 4.232 18 H 0.068 0.932 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.902 3.098 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.150 4.150 26 C -0.173 4.173 27 C -0.183 4.183 28 C -0.115 4.115 29 C 0.105 3.895 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.171 0.829 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.399 0.601 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.022 0.978 41 H 0.044 0.956 42 H 0.382 0.618 43 H 0.253 0.747 44 H 0.123 0.877 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.099 0.901 51 H 0.091 0.909 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 16.275 -12.104 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.134 4.134 3 C -0.195 4.195 4 N -0.141 5.141 5 C -0.040 4.040 6 N -0.201 5.201 7 C -0.065 4.065 8 C -0.132 4.132 9 H 0.116 0.884 10 C 0.315 3.685 11 O -0.408 6.408 12 N -0.356 5.356 13 C 0.117 3.883 14 C -0.222 4.222 15 C 0.017 3.983 16 N -0.370 5.370 17 C -0.363 4.363 18 H 0.086 0.914 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.733 3.267 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.168 4.168 26 C -0.210 4.210 27 C -0.220 4.220 28 C -0.153 4.153 29 C -0.017 4.017 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.188 0.812 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.233 0.767 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.040 0.960 41 H 0.062 0.938 42 H 0.216 0.784 43 H 0.063 0.937 44 H 0.141 0.859 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.111 0.889 48 H 0.109 0.891 49 H 0.103 0.897 50 H 0.118 0.882 51 H 0.110 0.890 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.299 15.864 -11.377 19.524 hybrid contribution -0.506 0.111 0.527 0.739 sum -0.805 15.975 -10.850 19.328 Atomic orbital electron populations 1.19986 0.87881 1.02330 1.02028 1.20805 0.96434 0.88385 1.07805 1.22223 0.82996 1.00175 1.14066 1.45391 1.06441 1.07468 1.54824 1.23177 0.94770 0.81351 1.04711 1.70005 0.99701 1.30181 1.20206 1.20167 0.85559 0.95085 1.05657 1.21421 0.93865 0.95990 1.01882 0.88374 1.19991 0.87303 0.81304 0.79945 1.90645 1.46311 1.69308 1.34580 1.45925 1.17694 1.21634 1.50308 1.20035 0.82873 0.89282 0.96147 1.22280 0.97731 1.01086 1.01111 1.21046 0.92133 0.94251 0.90869 1.42226 1.27421 1.55316 1.12009 1.19247 1.06839 1.21424 0.88825 0.91417 1.24655 0.97685 1.00868 0.97672 1.69640 1.14684 1.40493 1.33408 0.86186 0.77244 0.78537 0.84689 1.20689 1.21977 1.22007 1.22578 1.03061 1.00134 0.91060 1.23056 0.91719 1.02358 1.03889 1.22943 1.01496 1.02046 0.95486 1.21719 0.97694 0.94487 1.01412 1.22013 0.82228 0.94424 1.03019 0.91616 0.91678 0.91241 0.81171 0.88035 0.87698 0.76704 0.90204 0.91587 0.93029 0.96034 0.93826 0.78410 0.93683 0.85943 0.88319 0.88908 0.88941 0.89091 0.89702 0.88225 0.89036 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.42 36.01 0.38 -0.31 16 2 C -0.01 -0.07 7.10 -82.72 -0.59 -0.66 16 3 C -0.06 -0.73 11.55 -16.76 -0.19 -0.92 16 4 N -0.46 -5.60 3.13 -113.76 -0.36 -5.95 16 5 C 0.22 3.35 7.65 -155.24 -1.19 2.17 16 6 N -0.48 -8.21 11.24 -6.88 -0.08 -8.29 16 7 C -0.03 -0.36 5.43 -27.51 -0.15 -0.51 16 8 C -0.11 -1.30 2.56 -91.48 -0.23 -1.53 16 9 H 0.10 0.95 8.12 -51.93 -0.42 0.52 16 10 C 0.53 7.87 6.54 -10.99 -0.07 7.80 16 11 O -0.53 -9.48 12.07 5.55 0.07 -9.41 16 12 N -0.71 -10.21 4.65 -47.61 -0.22 -10.43 16 13 C 0.20 3.16 0.54 -131.82 -0.07 3.09 16 14 C -0.16 -2.25 6.97 37.16 0.26 -1.99 16 15 C 0.15 3.01 5.03 -4.04 -0.02 2.99 16 16 N -0.73 -17.93 5.04 -59.91 -0.30 -18.24 16 17 C -0.23 -6.55 9.99 -15.06 -0.15 -6.70 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 21 Si 0.90 22.96 29.55 -169.99 -5.02 17.94 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 C -0.15 -2.19 4.84 -90.62 -0.44 -2.63 16 26 C -0.17 -2.10 9.64 -26.69 -0.26 -2.36 16 27 C -0.18 -2.10 9.82 -26.69 -0.26 -2.36 16 28 C -0.12 -1.23 4.67 -26.51 -0.12 -1.35 16 29 C 0.11 0.92 6.98 -3.92 -0.03 0.90 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.10 1.39 7.85 -51.92 -0.41 0.99 16 35 H 0.10 1.81 8.11 -51.93 -0.42 1.39 16 36 H 0.40 5.20 8.04 -40.82 -0.33 4.87 16 37 H 0.08 1.23 6.04 -51.93 -0.31 0.92 16 38 H 0.07 0.85 6.79 -51.93 -0.35 0.50 16 39 H 0.05 0.62 6.99 -51.93 -0.36 0.25 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 1.01 6.32 -51.93 -0.33 0.68 16 42 H 0.38 9.67 6.62 -40.82 -0.27 9.40 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.12 2.19 7.08 -51.93 -0.37 1.82 16 45 H 0.10 1.11 5.88 -51.93 -0.31 0.80 16 46 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.09 0.96 7.35 -51.93 -0.38 0.58 16 49 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 50 H 0.10 0.98 7.79 -51.93 -0.40 0.57 16 51 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 405.73 15.07 6.11 6.11 Total: -1.00 -34.61 405.73 -10.75 -45.36 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -8.44 Total: 15.05 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -3.24 Total: -4.86 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -0.23 Total: -70.19 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.61 -10.75 -45.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715114682.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.309 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds