Wall clock time and date at job start Wed Apr 1 2020 04:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34854 * 125.96692 * 2 1 4 4 N 1.36312 * 106.68893 * 179.97438 * 3 2 1 5 5 C 1.35422 * 107.39905 * 0.04254 * 4 3 2 6 6 N 1.30089 * 108.62762 * 359.94013 * 5 4 3 7 7 C 1.51039 * 123.97969 * 179.86843 * 5 4 3 8 8 C 1.53398 * 108.20595 * 344.01264 * 7 5 4 9 9 H 1.08995 * 109.55008 * 288.89769 * 8 7 5 10 10 C 1.50699 * 109.50907 * 168.77748 * 8 7 5 11 11 O 1.21288 * 120.00089 * 240.24120 * 10 8 7 12 12 N 1.34772 * 120.00274 * 59.96965 * 10 8 7 13 13 C 1.46495 * 120.00231 * 175.27752 * 12 10 8 14 14 C 1.52998 * 109.47100 * 304.27404 * 13 12 10 15 15 C 1.53001 * 109.47558 * 64.28133 * 13 12 10 16 16 N 1.46497 * 109.47060 * 59.99747 * 15 13 12 17 17 C 1.36940 * 119.99735 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00293 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99814 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00202 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00255 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46586 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47436 * 119.99210 * 21 19 17 24 24 H 1.48494 * 109.46977 * 239.99919 * 21 19 17 25 25 C 1.53008 * 109.47025 * 184.27849 * 13 12 10 26 26 C 1.52997 * 117.49644 * 132.69751 * 25 13 12 27 27 C 1.53001 * 117.49651 * 64.03757 * 25 13 12 28 28 C 1.53159 * 109.23344 * 48.85101 * 8 7 5 29 29 C 1.46477 * 127.77361 * 180.02562 * 4 3 2 30 30 H 1.08995 * 109.47412 * 269.99824 * 1 2 3 31 31 H 1.08998 * 109.47043 * 30.00051 * 1 2 3 32 32 H 1.09000 * 109.47081 * 149.99819 * 1 2 3 33 33 H 1.08000 * 126.65308 * 359.97129 * 3 2 1 34 34 H 1.09008 * 109.71561 * 224.33849 * 7 5 4 35 35 H 1.08997 * 109.71864 * 103.69797 * 7 5 4 36 36 H 0.97005 * 119.99517 * 355.27019 * 12 10 8 37 37 H 1.09004 * 109.46923 * 60.00776 * 14 13 12 38 38 H 1.09005 * 109.47258 * 179.97438 * 14 13 12 39 39 H 1.08994 * 109.47763 * 300.00385 * 14 13 12 40 40 H 1.08997 * 109.47302 * 180.02562 * 15 13 12 41 41 H 1.09005 * 109.46623 * 299.99915 * 15 13 12 42 42 H 0.96999 * 120.00170 * 359.97438 * 16 15 13 43 43 H 0.97002 * 120.00135 * 179.97438 * 20 19 17 44 44 H 1.08998 * 115.55116 * 278.36176 * 25 13 12 45 45 H 1.09001 * 117.50461 * 359.97438 * 26 25 13 46 46 H 1.09003 * 117.50252 * 145.02069 * 26 25 13 47 47 H 1.08998 * 117.49536 * 214.97965 * 27 25 13 48 48 H 1.08994 * 117.49910 * 359.97438 * 27 25 13 49 49 H 1.09002 * 109.46206 * 50.52504 * 28 8 7 50 50 H 1.09001 * 109.46179 * 170.50329 * 28 8 7 51 51 H 1.08996 * 109.57853 * 43.12452 * 29 4 3 52 52 H 1.08991 * 109.69401 * 282.78082 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6414 0.0006 5 6 3.5413 -0.7121 0.0000 6 7 2.2956 -1.0870 0.0003 7 6 4.7654 -1.5968 -0.0026 8 6 5.9738 -0.7421 -0.4055 9 1 5.9051 -0.4891 -1.4635 10 6 7.2430 -1.5146 -0.1541 11 8 8.0742 -1.0814 0.6157 12 7 7.4521 -2.6895 -0.7803 13 6 8.7284 -3.3898 -0.6168 14 6 9.8755 -2.4590 -1.0151 15 6 8.8963 -3.8098 0.8448 16 7 7.7979 -4.7011 1.2260 17 6 7.7367 -5.2074 2.4969 18 1 8.4983 -4.9500 3.2181 19 6 6.6963 -6.0523 2.8580 20 7 5.7683 -6.3665 1.9790 21 14 6.6130 -6.7436 4.5914 22 1 7.7671 -6.2423 5.3801 23 1 5.3471 -6.3116 5.2364 24 1 6.6591 -8.2268 4.5355 25 6 8.7465 -4.6322 -1.5097 26 6 9.9924 -4.8690 -2.3655 27 6 8.6865 -4.4155 -3.0231 28 6 5.9833 0.5428 0.4281 29 6 4.8149 1.4381 0.0013 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.9764 2.1221 -0.0004 34 1 4.6323 -2.4067 -0.7199 35 1 4.9228 -2.0097 0.9938 36 1 6.7573 -3.0715 -1.3392 37 1 9.8627 -1.5739 -0.3789 38 1 10.8252 -2.9799 -0.8930 39 1 9.7560 -2.1598 -2.0563 40 1 9.8461 -4.3304 0.9665 41 1 8.8834 -2.9246 1.4809 42 1 7.1136 -4.9320 0.5784 43 1 5.0415 -6.9573 2.2312 44 1 8.2391 -5.5085 -1.1062 45 1 10.7990 -4.1395 -2.2929 46 1 10.3044 -5.9011 -2.5255 47 1 8.1400 -5.1494 -3.6153 48 1 8.6338 -3.3879 -3.3826 49 1 5.8819 0.2915 1.4839 50 1 6.9231 1.0717 0.2693 51 1 4.7134 2.2656 0.7034 52 1 5.0002 1.8285 -0.9992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715114682.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:00 Heat of formation + Delta-G solvation = 36.918676 kcal Electronic energy + Delta-G solvation = -31887.215337 eV Core-core repulsion = 27887.688133 eV Total energy + Delta-G solvation = -3999.527204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.32643 -41.47523 -39.32165 -37.26382 -36.34094 -35.04292 -34.39409 -32.94539 -32.44193 -31.18880 -29.80445 -28.13051 -27.55962 -25.47612 -24.92585 -24.22651 -23.64417 -23.10043 -21.55842 -20.86549 -20.13778 -20.04929 -19.22637 -18.33315 -17.78385 -17.00076 -16.88871 -16.71089 -16.27321 -16.14548 -15.65782 -15.29773 -15.17689 -15.02267 -14.95716 -14.68892 -14.62742 -14.21576 -13.88736 -13.72306 -13.65770 -13.48543 -13.21159 -13.09499 -13.05114 -12.84573 -12.76517 -12.60440 -12.42212 -12.27796 -12.17151 -12.11831 -12.02556 -11.97070 -11.74257 -11.23026 -11.06590 -10.91519 -10.88166 -10.47626 -10.45542 -9.90392 -9.11888 -8.93142 -7.95220 -5.20646 1.07920 1.42031 1.43263 1.52605 1.66611 1.86637 2.08960 2.16697 2.54154 3.02746 3.20839 3.38098 3.50581 3.54289 3.59582 3.65775 3.91989 3.98161 4.03689 4.07714 4.15091 4.19600 4.26039 4.27083 4.34985 4.45865 4.49125 4.50997 4.61577 4.72401 4.77633 4.80880 4.86637 4.90454 4.90818 4.93441 5.01985 5.03680 5.04618 5.09525 5.15811 5.17370 5.31760 5.34262 5.38735 5.45912 5.49697 5.72709 5.90221 6.24914 6.27247 6.68320 7.19397 7.34657 7.35678 8.11313 8.38472 9.27585 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007834 B = 0.003967 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3573.455902 B = 7056.548550 C = 9212.278975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.042 4.042 3 C -0.042 4.042 4 N -0.453 5.453 5 C 0.196 3.804 6 N -0.531 5.531 7 C -0.016 4.016 8 C -0.095 4.095 9 H 0.133 0.867 10 C 0.524 3.476 11 O -0.563 6.563 12 N -0.703 5.703 13 C 0.212 3.788 14 C -0.154 4.154 15 C 0.146 3.854 16 N -0.728 5.728 17 C -0.241 4.241 18 H 0.063 0.937 19 C -0.067 4.067 20 N -0.961 5.961 21 Si 0.962 3.038 22 H -0.271 1.271 23 H -0.296 1.296 24 H -0.289 1.289 25 C -0.177 4.177 26 C -0.164 4.164 27 C -0.155 4.155 28 C -0.111 4.111 29 C 0.107 3.893 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.215 0.785 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.406 0.594 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.015 0.985 41 H 0.019 0.981 42 H 0.377 0.623 43 H 0.250 0.750 44 H 0.083 0.917 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.053 0.947 50 H 0.114 0.886 51 H 0.117 0.883 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.408 18.931 -14.057 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.170 4.170 3 C -0.175 4.175 4 N -0.135 5.135 5 C -0.067 4.067 6 N -0.252 5.252 7 C -0.056 4.056 8 C -0.117 4.117 9 H 0.150 0.850 10 C 0.311 3.689 11 O -0.442 6.442 12 N -0.353 5.353 13 C 0.126 3.874 14 C -0.212 4.212 15 C 0.019 3.981 16 N -0.371 5.371 17 C -0.373 4.373 18 H 0.081 0.919 19 C -0.260 4.260 20 N -0.612 5.612 21 Si 0.792 3.208 22 H -0.196 1.196 23 H -0.224 1.224 24 H -0.216 1.216 25 C -0.196 4.196 26 C -0.201 4.201 27 C -0.191 4.191 28 C -0.149 4.149 29 C -0.014 4.014 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.231 0.769 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.241 0.759 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.033 0.967 41 H 0.037 0.963 42 H 0.210 0.790 43 H 0.059 0.941 44 H 0.101 0.899 45 H 0.132 0.868 46 H 0.114 0.886 47 H 0.119 0.881 48 H 0.129 0.871 49 H 0.072 0.928 50 H 0.132 0.868 51 H 0.135 0.865 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.143 18.534 -13.344 22.839 hybrid contribution -0.616 -0.705 1.176 1.503 sum -0.473 17.830 -12.168 21.592 Atomic orbital electron populations 1.20047 0.86172 1.03242 1.02378 1.21432 0.97933 0.88455 1.09222 1.22876 0.82184 1.01429 1.11026 1.45610 1.07831 1.06659 1.53424 1.23022 0.94215 0.82833 1.06615 1.69917 1.01158 1.32637 1.21441 1.19936 0.87073 0.95627 1.02940 1.21377 0.90706 0.95555 1.04030 0.84965 1.20546 0.87888 0.81319 0.79149 1.90632 1.47691 1.70125 1.35767 1.45955 1.17660 1.21436 1.50206 1.19826 0.84293 0.90478 0.92838 1.22192 0.96973 0.99721 1.02274 1.21102 0.90419 0.92200 0.94412 1.42295 1.28300 1.55644 1.10875 1.19548 1.06513 1.21117 0.90130 0.91909 1.25364 0.97667 1.01728 1.01211 1.69779 1.15163 1.41253 1.35002 0.85231 0.77091 0.77785 0.80663 1.19605 1.22393 1.21618 1.22264 1.05940 0.98302 0.93081 1.23183 0.91721 1.03180 1.01990 1.23026 1.00373 1.03377 0.92366 1.21681 0.99559 0.94344 0.99351 1.22294 0.79678 0.93754 1.05668 0.91497 0.88553 0.92533 0.76884 0.88430 0.92218 0.75899 0.91879 0.90717 0.90256 0.96686 0.96276 0.78968 0.94143 0.89873 0.86795 0.88573 0.88096 0.87145 0.92796 0.86820 0.86468 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.23 10.42 71.24 0.74 -0.48 16 2 C -0.04 -1.14 7.10 41.41 0.29 -0.84 16 3 C -0.04 -0.87 11.55 83.22 0.96 0.09 16 4 N -0.45 -10.16 3.13 -513.83 -1.61 -11.77 16 5 C 0.20 5.98 7.65 138.23 1.06 7.03 16 6 N -0.53 -18.61 11.24 -175.69 -1.98 -20.59 16 7 C -0.02 -0.49 5.43 30.09 0.16 -0.33 16 8 C -0.10 -2.20 2.56 -11.35 -0.03 -2.23 16 9 H 0.13 2.19 8.12 -2.39 -0.02 2.17 16 10 C 0.52 15.75 6.54 87.66 0.57 16.32 16 11 O -0.56 -20.53 12.07 -3.06 -0.04 -20.56 16 12 N -0.70 -20.51 4.65 -422.92 -1.97 -22.48 16 13 C 0.21 6.65 0.54 3.61 0.00 6.66 16 14 C -0.15 -3.98 6.97 71.98 0.50 -3.48 16 15 C 0.15 6.32 5.03 86.38 0.43 6.76 16 16 N -0.73 -37.81 5.04 -343.45 -1.73 -39.54 16 17 C -0.24 -14.13 9.99 84.03 0.84 -13.29 16 18 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 19 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 20 N -0.96 -59.80 13.06 21.65 0.28 -59.52 16 21 Si 0.96 48.45 29.55 68.60 2.03 50.48 16 22 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 23 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 24 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 25 C -0.18 -5.14 4.84 -10.79 -0.05 -5.19 16 26 C -0.16 -3.64 9.64 30.62 0.30 -3.34 16 27 C -0.15 -3.17 9.82 30.62 0.30 -2.87 16 28 C -0.11 -2.24 4.67 30.73 0.14 -2.10 16 29 C 0.11 1.51 6.98 86.47 0.60 2.11 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.10 2.88 7.85 -2.38 -0.02 2.87 16 35 H 0.06 2.30 8.11 -2.39 -0.02 2.28 16 36 H 0.41 10.67 8.04 -92.70 -0.75 9.93 16 37 H 0.06 1.89 6.04 -2.38 -0.01 1.88 16 38 H 0.07 1.79 6.79 -2.38 -0.02 1.78 16 39 H 0.08 1.63 6.99 -2.39 -0.02 1.61 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.02 0.93 6.32 -2.38 -0.02 0.92 16 42 H 0.38 20.17 6.62 -92.71 -0.61 19.56 16 43 H 0.25 15.16 8.31 -92.71 -0.77 14.38 16 44 H 0.08 3.12 7.08 -2.39 -0.02 3.10 16 45 H 0.11 2.20 5.88 -2.39 -0.01 2.19 16 46 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.11 1.88 7.35 -2.39 -0.02 1.86 16 49 H 0.05 1.42 8.12 -2.39 -0.02 1.40 16 50 H 0.11 2.00 7.79 -2.39 -0.02 1.99 16 51 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -80.41 405.73 1.87 -78.54 By element: Atomic # 1 Polarization: 44.55 SS G_CDS: -0.42 Total: 44.13 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 7.30 Total: 1.31 kcal Atomic # 7 Polarization: -146.90 SS G_CDS: -7.00 Total: -153.90 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.04 Total: -20.56 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -80.41 1.87 -78.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715114682.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.459 kcal (2) G-P(sol) polarization free energy of solvation -80.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds