Wall clock time and date at job start Wed Apr 1 2020 04:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34855 * 125.96079 * 2 1 4 4 N 1.36308 * 106.68480 * 180.02562 * 3 2 1 5 5 C 1.35421 * 107.40149 * 359.94824 * 4 3 2 6 6 N 1.30087 * 108.62796 * 0.06718 * 5 4 3 7 7 C 1.51048 * 123.98053 * 180.10813 * 5 4 3 8 8 C 1.53397 * 108.21154 * 15.94092 * 7 5 4 9 9 H 1.09001 * 109.55204 * 71.13048 * 8 7 5 10 10 C 1.50700 * 109.51021 * 191.25284 * 8 7 5 11 11 O 1.21280 * 120.00145 * 97.72077 * 10 8 7 12 12 N 1.34781 * 119.99726 * 277.44808 * 10 8 7 13 13 C 1.46924 * 120.62721 * 175.59786 * 12 10 8 14 14 C 1.53629 * 108.54444 * 126.36533 * 13 12 10 15 15 C 1.53039 * 109.23773 * 54.85438 * 14 13 12 16 16 C 1.53006 * 109.44472 * 178.49683 * 15 14 13 17 17 N 1.46497 * 109.46245 * 58.53307 * 15 14 13 18 18 C 1.36942 * 119.99716 * 59.93044 * 17 15 14 19 19 H 1.07992 * 120.00702 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99390 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00429 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99777 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47052 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47079 * 119.99948 * 22 20 18 25 25 H 1.48498 * 109.47309 * 240.00477 * 22 20 18 26 26 C 1.53039 * 109.53928 * 298.50877 * 15 14 13 27 27 C 1.46921 * 120.63009 * 355.87364 * 12 10 8 28 28 C 1.53151 * 109.23852 * 311.18047 * 8 7 5 29 29 C 1.46479 * 127.77384 * 179.91456 * 4 3 2 30 30 H 1.09001 * 109.46859 * 90.00751 * 1 2 3 31 31 H 1.08997 * 109.46957 * 210.00239 * 1 2 3 32 32 H 1.08997 * 109.47498 * 330.00100 * 1 2 3 33 33 H 1.07998 * 126.65756 * 0.03538 * 3 2 1 34 34 H 1.08997 * 109.71458 * 256.26039 * 7 5 4 35 35 H 1.08999 * 109.71543 * 135.61798 * 7 5 4 36 36 H 1.09001 * 109.58524 * 246.19596 * 13 12 10 37 37 H 1.09006 * 109.59124 * 6.62382 * 13 12 10 38 38 H 1.08996 * 109.63238 * 294.86495 * 14 13 12 39 39 H 1.09001 * 109.42845 * 174.71975 * 14 13 12 40 40 H 1.09007 * 109.46672 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47287 * 300.06096 * 16 15 14 42 42 H 1.09001 * 109.47098 * 60.06372 * 16 15 14 43 43 H 0.96999 * 120.00397 * 239.92991 * 17 15 14 44 44 H 0.96996 * 120.00342 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.49714 * 301.41957 * 26 15 14 46 46 H 1.09000 * 109.49763 * 181.31743 * 26 15 14 47 47 H 1.09001 * 109.59026 * 353.37303 * 27 12 10 48 48 H 1.08998 * 109.58683 * 113.66163 * 27 12 10 49 49 H 1.09002 * 109.46512 * 189.49791 * 28 8 7 50 50 H 1.08998 * 109.46621 * 309.48341 * 28 8 7 51 51 H 1.08997 * 109.58569 * 77.36142 * 29 4 3 52 52 H 1.09001 * 109.69685 * 317.01383 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5856 0.6416 -0.0006 5 6 3.5413 -0.7119 0.0002 6 7 2.2957 -1.0869 -0.0002 7 6 4.7656 -1.5967 0.0023 8 6 5.9743 -0.7416 0.4034 9 1 5.9069 -0.4883 1.4615 10 6 7.2434 -1.5141 0.1507 11 8 7.8747 -1.3268 -0.8678 12 7 7.6797 -2.4091 1.0591 13 6 8.8609 -3.2387 0.7849 14 6 9.8551 -3.0715 1.9441 15 6 9.1510 -3.3974 3.2633 16 6 10.1470 -3.2687 4.4176 17 7 8.6340 -4.7672 3.2152 18 6 9.4933 -5.8172 3.0291 19 1 10.5519 -5.6354 2.9174 20 6 9.0034 -7.1152 2.9841 21 7 7.7131 -7.3368 3.1198 22 14 10.1753 -8.5475 2.7295 23 1 11.5634 -8.0350 2.6050 24 1 10.0906 -9.4688 3.8911 25 1 9.8035 -9.2771 1.4908 26 6 7.9916 -2.4221 3.4791 27 6 6.9795 -2.5780 2.3397 28 6 5.9828 0.5429 -0.4305 29 6 4.8148 1.4383 -0.0025 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.9763 2.1222 0.0005 34 1 4.9221 -2.0102 -0.9939 35 1 4.6332 -2.4059 0.7204 36 1 8.5625 -4.2839 0.7038 37 1 9.3260 -2.9159 -0.1466 38 1 10.2184 -2.0442 1.9697 39 1 10.6950 -3.7516 1.8023 40 1 9.6460 -3.5011 5.3574 41 1 10.9729 -3.9632 4.2640 42 1 10.5314 -2.2493 4.4539 43 1 7.6831 -4.9306 3.3152 44 1 7.3708 -8.2439 3.0887 45 1 8.3725 -1.4008 3.4903 46 1 7.5052 -2.6399 4.4300 47 1 6.2029 -1.8191 2.4344 48 1 6.5287 -3.5695 2.3817 49 1 6.9227 1.0720 -0.2731 50 1 5.8799 0.2914 -1.4860 51 1 5.0001 1.8267 0.9989 52 1 4.7142 2.2672 -0.7031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717298219.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:32 Heat of formation + Delta-G solvation = 32.231584 kcal Electronic energy + Delta-G solvation = -31778.367213 eV Core-core repulsion = 27778.636761 eV Total energy + Delta-G solvation = -3999.730452 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.51802 -40.26567 -38.12563 -36.42248 -34.61287 -33.50734 -32.32355 -31.72714 -30.76259 -29.32970 -28.94181 -27.93793 -27.14737 -24.40643 -24.01663 -23.61628 -22.87124 -22.05610 -20.56125 -19.65542 -19.11287 -18.11755 -17.18377 -17.10080 -16.91928 -16.17955 -15.50812 -15.38609 -14.79133 -14.44346 -14.32351 -14.12709 -13.97170 -13.88510 -13.72494 -13.64104 -13.39026 -13.20498 -12.99018 -12.55259 -12.50985 -12.45547 -12.22616 -12.04755 -11.86571 -11.59432 -11.40007 -11.35399 -11.31240 -11.23493 -10.92146 -10.82778 -10.69974 -10.31811 -10.14803 -10.02089 -9.80230 -9.64401 -9.61850 -9.44294 -8.95720 -8.31694 -8.27225 -6.98856 -5.79697 -3.08066 1.88313 2.57555 2.66963 2.97189 3.15402 3.41242 3.47464 3.49541 4.03626 4.19631 4.30033 4.31932 4.56252 4.70052 4.77706 4.84352 4.85639 4.99649 5.10001 5.15131 5.21171 5.27380 5.36402 5.45675 5.46874 5.54887 5.57058 5.61385 5.63625 5.68449 5.75300 5.80023 5.83006 5.89868 5.92109 6.01354 6.15822 6.18125 6.25034 6.32575 6.41396 6.47825 6.61285 6.66631 6.71702 6.85872 7.00194 7.01828 7.02557 7.67495 7.70027 8.02188 8.30684 8.38518 9.50567 10.06113 10.41311 11.42817 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.002752 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.404180 B =10170.224602 C =11001.050411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.005 4.005 3 C -0.058 4.058 4 N -0.456 5.456 5 C 0.218 3.782 6 N -0.483 5.483 7 C -0.022 4.022 8 C -0.113 4.113 9 H 0.101 0.899 10 C 0.520 3.480 11 O -0.549 6.549 12 N -0.593 5.593 13 C 0.120 3.880 14 C -0.133 4.133 15 C 0.198 3.802 16 C -0.150 4.150 17 N -0.716 5.716 18 C -0.232 4.232 19 H 0.071 0.929 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.901 3.099 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.292 1.292 26 C -0.130 4.130 27 C 0.106 3.894 28 C -0.115 4.115 29 C 0.105 3.895 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.172 0.828 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.086 0.914 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 20.720 -3.530 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.190 4.190 4 N -0.139 5.139 5 C -0.044 4.044 6 N -0.202 5.202 7 C -0.061 4.061 8 C -0.135 4.135 9 H 0.119 0.881 10 C 0.306 3.694 11 O -0.428 6.428 12 N -0.325 5.325 13 C -0.001 4.001 14 C -0.173 4.173 15 C 0.106 3.894 16 C -0.210 4.210 17 N -0.359 5.359 18 C -0.363 4.363 19 H 0.089 0.911 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.732 3.268 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.168 4.168 27 C -0.017 4.017 28 C -0.153 4.153 29 C -0.018 4.018 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.190 0.810 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.114 0.886 50 H 0.104 0.896 51 H 0.104 0.896 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.548 19.983 -4.081 21.748 hybrid contribution 0.622 -0.072 0.098 0.633 sum -6.926 19.912 -3.983 21.455 Atomic orbital electron populations 1.19996 0.87749 1.02522 1.02004 1.20809 0.96469 0.88317 1.07800 1.22261 0.82876 1.00286 1.13626 1.45370 1.06513 1.07431 1.54629 1.23089 0.94648 0.81446 1.05236 1.69973 0.99628 1.30339 1.20279 1.20077 0.85693 0.95512 1.04843 1.21452 0.93817 0.95961 1.02274 0.88130 1.20119 0.85867 0.79902 0.83467 1.90674 1.58078 1.66464 1.27541 1.48122 1.29717 1.37704 1.16924 1.21714 0.84844 0.95479 0.98087 1.22373 0.98641 0.99805 0.96499 1.19529 0.91459 0.86098 0.92299 1.22225 1.00291 0.99100 0.99351 1.42492 1.07327 0.99125 1.86909 1.19143 0.90459 0.85596 1.41089 0.91146 1.24688 0.95768 0.97260 1.03030 1.69644 1.11133 1.19936 1.57261 0.86214 0.80041 0.83195 0.77310 1.20669 1.22030 1.21965 1.22086 0.97228 0.99512 0.97994 1.21844 0.94502 1.02766 0.82595 1.21724 0.97730 0.94417 1.01410 1.22030 0.82072 0.94354 1.03309 0.91630 0.91179 0.91548 0.81036 0.88563 0.87750 0.89334 0.90489 0.93445 0.90748 0.93152 0.92503 0.94655 0.78188 0.93597 0.91914 0.90634 0.90733 0.89815 0.88623 0.89591 0.89584 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.42 36.01 0.38 -0.20 16 2 C 0.00 -0.06 7.10 -82.72 -0.59 -0.64 16 3 C -0.06 -0.58 11.55 -16.76 -0.19 -0.77 16 4 N -0.46 -4.74 3.13 -113.75 -0.36 -5.10 16 5 C 0.22 2.80 7.65 -155.24 -1.19 1.62 16 6 N -0.48 -7.10 11.24 -6.88 -0.08 -7.17 16 7 C -0.02 -0.26 5.60 -27.51 -0.15 -0.42 16 8 C -0.11 -1.22 1.71 -91.49 -0.16 -1.37 16 9 H 0.10 0.95 6.19 -51.93 -0.32 0.63 16 10 C 0.52 7.46 6.80 -10.98 -0.07 7.38 16 11 O -0.55 -9.57 15.64 5.56 0.09 -9.48 16 12 N -0.59 -8.91 2.97 -172.50 -0.51 -9.43 16 13 C 0.12 2.09 6.21 -3.48 -0.02 2.07 16 14 C -0.13 -2.25 4.72 -26.38 -0.12 -2.38 16 15 C 0.20 3.45 0.74 -131.78 -0.10 3.35 16 16 C -0.15 -2.54 8.44 37.16 0.31 -2.22 16 17 N -0.72 -15.76 4.13 -47.19 -0.19 -15.95 16 18 C -0.23 -5.84 8.68 -15.06 -0.13 -5.97 16 19 H 0.07 1.76 6.70 -52.49 -0.35 1.41 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 22 Si 0.90 21.71 29.55 -169.99 -5.02 16.68 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 C -0.13 -1.84 4.96 -26.61 -0.13 -1.97 16 27 C 0.11 1.45 5.82 -3.71 -0.02 1.43 16 28 C -0.11 -1.03 4.60 -26.52 -0.12 -1.15 16 29 C 0.10 0.75 6.98 -3.92 -0.03 0.73 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 35 H 0.10 1.27 7.94 -51.93 -0.41 0.85 16 36 H 0.09 1.80 7.74 -51.93 -0.40 1.40 16 37 H 0.08 1.36 7.00 -51.93 -0.36 0.99 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.36 7.31 -51.93 -0.38 0.98 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.04 7.27 -51.93 -0.38 0.67 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.38 9.07 6.47 -40.82 -0.26 8.81 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.07 0.81 5.41 -51.93 -0.28 0.53 16 48 H 0.08 1.34 6.95 -51.93 -0.36 0.98 16 49 H 0.10 0.80 8.12 -51.93 -0.42 0.38 16 50 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 51 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 52 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 399.62 15.07 6.02 6.02 Total: -1.00 -31.97 399.62 -10.33 -42.30 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.56 Total: 8.99 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.44 Total: -0.93 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -0.42 Total: -63.59 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.97 -10.33 -42.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717298219.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.535 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds