Wall clock time and date at job start Wed Apr 1 2020 04:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34855 * 125.96079 * 2 1 4 4 N 1.36308 * 106.68480 * 180.02562 * 3 2 1 5 5 C 1.35421 * 107.40149 * 359.94824 * 4 3 2 6 6 N 1.30087 * 108.62796 * 0.06718 * 5 4 3 7 7 C 1.51048 * 123.98053 * 180.10813 * 5 4 3 8 8 C 1.53397 * 108.21154 * 15.94092 * 7 5 4 9 9 H 1.09001 * 109.55204 * 71.13048 * 8 7 5 10 10 C 1.50700 * 109.51021 * 191.25284 * 8 7 5 11 11 O 1.21280 * 120.00145 * 97.72077 * 10 8 7 12 12 N 1.34781 * 119.99726 * 277.44808 * 10 8 7 13 13 C 1.46924 * 120.62721 * 175.59786 * 12 10 8 14 14 C 1.53629 * 108.54444 * 126.36533 * 13 12 10 15 15 C 1.53039 * 109.23773 * 54.85438 * 14 13 12 16 16 C 1.53006 * 109.44472 * 178.49683 * 15 14 13 17 17 N 1.46497 * 109.46245 * 58.53307 * 15 14 13 18 18 C 1.36942 * 119.99716 * 59.93044 * 17 15 14 19 19 H 1.07992 * 120.00702 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99390 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00429 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99777 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47052 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47079 * 119.99948 * 22 20 18 25 25 H 1.48498 * 109.47309 * 240.00477 * 22 20 18 26 26 C 1.53039 * 109.53928 * 298.50877 * 15 14 13 27 27 C 1.46921 * 120.63009 * 355.87364 * 12 10 8 28 28 C 1.53151 * 109.23852 * 311.18047 * 8 7 5 29 29 C 1.46479 * 127.77384 * 179.91456 * 4 3 2 30 30 H 1.09001 * 109.46859 * 90.00751 * 1 2 3 31 31 H 1.08997 * 109.46957 * 210.00239 * 1 2 3 32 32 H 1.08997 * 109.47498 * 330.00100 * 1 2 3 33 33 H 1.07998 * 126.65756 * 0.03538 * 3 2 1 34 34 H 1.08997 * 109.71458 * 256.26039 * 7 5 4 35 35 H 1.08999 * 109.71543 * 135.61798 * 7 5 4 36 36 H 1.09001 * 109.58524 * 246.19596 * 13 12 10 37 37 H 1.09006 * 109.59124 * 6.62382 * 13 12 10 38 38 H 1.08996 * 109.63238 * 294.86495 * 14 13 12 39 39 H 1.09001 * 109.42845 * 174.71975 * 14 13 12 40 40 H 1.09007 * 109.46672 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47287 * 300.06096 * 16 15 14 42 42 H 1.09001 * 109.47098 * 60.06372 * 16 15 14 43 43 H 0.96999 * 120.00397 * 239.92991 * 17 15 14 44 44 H 0.96996 * 120.00342 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.49714 * 301.41957 * 26 15 14 46 46 H 1.09000 * 109.49763 * 181.31743 * 26 15 14 47 47 H 1.09001 * 109.59026 * 353.37303 * 27 12 10 48 48 H 1.08998 * 109.58683 * 113.66163 * 27 12 10 49 49 H 1.09002 * 109.46512 * 189.49791 * 28 8 7 50 50 H 1.08998 * 109.46621 * 309.48341 * 28 8 7 51 51 H 1.08997 * 109.58569 * 77.36142 * 29 4 3 52 52 H 1.09001 * 109.69685 * 317.01383 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5856 0.6416 -0.0006 5 6 3.5413 -0.7119 0.0002 6 7 2.2957 -1.0869 -0.0002 7 6 4.7656 -1.5967 0.0023 8 6 5.9743 -0.7416 0.4034 9 1 5.9069 -0.4883 1.4615 10 6 7.2434 -1.5141 0.1507 11 8 7.8747 -1.3268 -0.8678 12 7 7.6797 -2.4091 1.0591 13 6 8.8609 -3.2387 0.7849 14 6 9.8551 -3.0715 1.9441 15 6 9.1510 -3.3974 3.2633 16 6 10.1470 -3.2687 4.4176 17 7 8.6340 -4.7672 3.2152 18 6 9.4933 -5.8172 3.0291 19 1 10.5519 -5.6354 2.9174 20 6 9.0034 -7.1152 2.9841 21 7 7.7131 -7.3368 3.1198 22 14 10.1753 -8.5475 2.7295 23 1 11.5634 -8.0350 2.6050 24 1 10.0906 -9.4688 3.8911 25 1 9.8035 -9.2771 1.4908 26 6 7.9916 -2.4221 3.4791 27 6 6.9795 -2.5780 2.3397 28 6 5.9828 0.5429 -0.4305 29 6 4.8148 1.4383 -0.0025 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.9763 2.1222 0.0005 34 1 4.9221 -2.0102 -0.9939 35 1 4.6332 -2.4059 0.7204 36 1 8.5625 -4.2839 0.7038 37 1 9.3260 -2.9159 -0.1466 38 1 10.2184 -2.0442 1.9697 39 1 10.6950 -3.7516 1.8023 40 1 9.6460 -3.5011 5.3574 41 1 10.9729 -3.9632 4.2640 42 1 10.5314 -2.2493 4.4539 43 1 7.6831 -4.9306 3.3152 44 1 7.3708 -8.2439 3.0887 45 1 8.3725 -1.4008 3.4903 46 1 7.5052 -2.6399 4.4300 47 1 6.2029 -1.8191 2.4344 48 1 6.5287 -3.5695 2.3817 49 1 6.9227 1.0720 -0.2731 50 1 5.8799 0.2914 -1.4860 51 1 5.0001 1.8267 0.9989 52 1 4.7142 2.2672 -0.7031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717298219.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:31 Heat of formation + Delta-G solvation = 13.741323 kcal Electronic energy + Delta-G solvation = -31779.169011 eV Core-core repulsion = 27778.636761 eV Total energy + Delta-G solvation = -4000.532249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.33594 -41.47066 -39.44097 -37.33107 -36.07521 -34.48207 -34.04538 -32.50310 -32.00664 -30.90485 -30.00244 -29.15898 -28.03127 -25.89128 -25.31126 -24.55088 -24.16421 -23.19954 -21.43909 -20.77480 -20.04570 -19.47436 -18.98448 -18.24965 -17.76107 -17.12135 -16.67505 -16.47615 -16.35661 -15.64598 -15.50914 -15.27405 -15.19070 -15.04361 -14.89829 -14.64288 -14.59854 -14.25974 -14.10575 -13.84444 -13.51159 -13.42787 -13.23401 -13.14155 -12.90557 -12.85729 -12.67712 -12.63581 -12.60429 -12.49334 -12.28915 -12.17627 -12.09877 -11.96722 -11.74921 -11.46061 -11.17236 -10.90142 -10.85162 -10.68688 -10.45695 -9.60875 -9.11201 -8.88019 -7.86740 -5.11061 1.09002 1.46341 1.48743 1.50709 1.55764 1.86694 1.98805 2.09567 2.60041 3.12274 3.41222 3.47583 3.48421 3.55291 3.76088 3.89789 3.91118 4.03602 4.10671 4.12799 4.24643 4.25328 4.30285 4.35999 4.47093 4.49076 4.52438 4.60115 4.63264 4.66561 4.75921 4.82068 4.85828 4.92722 4.95547 5.01987 5.04475 5.06143 5.07912 5.10963 5.18912 5.19448 5.36352 5.37939 5.39647 5.61587 5.64343 5.68278 5.90649 6.25153 6.36561 6.47808 7.11468 7.18652 7.44129 8.21457 8.43643 9.36814 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.002752 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.404180 B =10170.224602 C =11001.050411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.041 4.041 3 C -0.040 4.040 4 N -0.452 5.452 5 C 0.196 3.804 6 N -0.528 5.528 7 C -0.017 4.017 8 C -0.099 4.099 9 H 0.124 0.876 10 C 0.520 3.480 11 O -0.580 6.580 12 N -0.594 5.594 13 C 0.128 3.872 14 C -0.124 4.124 15 C 0.187 3.813 16 C -0.144 4.144 17 N -0.722 5.722 18 C -0.208 4.208 19 H 0.073 0.927 20 C -0.075 4.075 21 N -0.967 5.967 22 Si 0.952 3.048 23 H -0.269 1.269 24 H -0.300 1.300 25 H -0.302 1.302 26 C -0.123 4.123 27 C 0.109 3.891 28 C -0.111 4.111 29 C 0.105 3.895 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.212 0.788 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.374 0.626 44 H 0.245 0.755 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.111 0.889 48 H 0.055 0.945 49 H 0.108 0.892 50 H 0.067 0.933 51 H 0.113 0.887 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.792 24.963 -2.735 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.169 4.169 3 C -0.174 4.174 4 N -0.135 5.135 5 C -0.066 4.066 6 N -0.249 5.249 7 C -0.056 4.056 8 C -0.121 4.121 9 H 0.142 0.858 10 C 0.309 3.691 11 O -0.461 6.461 12 N -0.325 5.325 13 C 0.005 3.995 14 C -0.164 4.164 15 C 0.097 3.903 16 C -0.203 4.203 17 N -0.363 5.363 18 C -0.340 4.340 19 H 0.090 0.910 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.784 3.216 23 H -0.193 1.193 24 H -0.227 1.227 25 H -0.230 1.230 26 C -0.161 4.161 27 C -0.013 4.013 28 C -0.149 4.149 29 C -0.015 4.015 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.229 0.771 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.207 0.793 44 H 0.054 0.946 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.128 0.872 48 H 0.073 0.927 49 H 0.127 0.873 50 H 0.086 0.914 51 H 0.131 0.869 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.415 24.279 -3.276 25.597 hybrid contribution 0.610 -1.288 -0.208 1.441 sum -6.805 22.991 -3.484 24.229 Atomic orbital electron populations 1.20045 0.86267 1.03136 1.02468 1.21392 0.97848 0.88486 1.09198 1.22856 0.82196 1.01420 1.10878 1.45582 1.07754 1.06741 1.53418 1.22973 0.94149 0.82748 1.06775 1.69894 1.00992 1.32511 1.21469 1.19932 0.86467 0.95617 1.03600 1.21405 0.90720 0.95939 1.04017 0.85794 1.20734 0.86476 0.79431 0.82465 1.90660 1.59295 1.67455 1.28685 1.48138 1.29134 1.37487 1.17761 1.21383 0.86003 0.93787 0.98309 1.22271 0.97680 1.00721 0.95741 1.19873 0.93175 0.84509 0.92742 1.22136 0.99154 1.00612 0.98423 1.42660 1.06543 1.00642 1.86456 1.19406 0.90868 0.86299 1.37452 0.90958 1.25287 0.96839 0.99491 1.05076 1.69775 1.12539 1.19464 1.60162 0.85364 0.79189 0.80773 0.76270 1.19344 1.22740 1.23048 1.22057 0.95871 0.99928 0.98227 1.21874 0.95100 1.02501 0.81853 1.21702 0.99422 0.93790 0.99962 1.22293 0.79702 0.93861 1.05650 0.91213 0.92577 0.88902 0.77119 0.90395 0.88702 0.93291 0.91032 0.90951 0.92604 0.93675 0.94595 0.91290 0.79334 0.94581 0.88839 0.89949 0.87150 0.92681 0.87330 0.91439 0.86867 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.42 71.24 0.74 -0.27 16 2 C -0.04 -0.93 7.10 41.41 0.29 -0.63 16 3 C -0.04 -0.67 11.55 83.22 0.96 0.29 16 4 N -0.45 -8.05 3.13 -513.80 -1.61 -9.66 16 5 C 0.20 4.87 7.65 138.24 1.06 5.92 16 6 N -0.53 -15.51 11.24 -175.68 -1.98 -17.49 16 7 C -0.02 -0.40 5.60 30.09 0.17 -0.23 16 8 C -0.10 -1.93 1.71 -11.36 -0.02 -1.95 16 9 H 0.12 1.85 6.19 -2.39 -0.01 1.83 16 10 C 0.52 14.38 6.80 87.66 0.60 14.98 16 11 O -0.58 -19.97 15.64 -3.03 -0.05 -20.01 16 12 N -0.59 -17.41 2.97 -818.05 -2.43 -19.83 16 13 C 0.13 4.50 6.21 86.51 0.54 5.03 16 14 C -0.12 -4.07 4.72 30.82 0.15 -3.93 16 15 C 0.19 6.26 0.74 3.63 0.00 6.26 16 16 C -0.14 -4.55 8.44 71.98 0.61 -3.95 16 17 N -0.72 -32.13 4.13 -303.22 -1.25 -33.38 16 18 C -0.21 -10.63 8.68 84.03 0.73 -9.90 16 19 H 0.07 3.63 6.70 -2.91 -0.02 3.61 16 20 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 21 N -0.97 -57.43 13.06 21.65 0.28 -57.15 16 22 Si 0.95 45.83 29.55 68.60 2.03 47.86 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 25 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 26 C -0.12 -3.14 4.96 30.67 0.15 -2.98 16 27 C 0.11 2.83 5.82 86.37 0.50 3.34 16 28 C -0.11 -1.68 4.60 30.73 0.14 -1.53 16 29 C 0.11 1.06 6.98 86.47 0.60 1.66 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.08 2.08 8.11 -2.39 -0.02 2.06 16 35 H 0.09 2.37 7.94 -2.39 -0.02 2.35 16 36 H 0.05 2.10 7.74 -2.39 -0.02 2.08 16 37 H 0.07 2.57 7.00 -2.38 -0.02 2.55 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 2.03 7.31 -2.39 -0.02 2.01 16 40 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.03 1.26 7.27 -2.39 -0.02 1.25 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.37 18.13 6.47 -92.71 -0.60 17.53 16 44 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 45 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 47 H 0.11 2.08 5.41 -2.39 -0.01 2.06 16 48 H 0.05 1.78 6.95 -2.39 -0.02 1.77 16 49 H 0.11 1.42 8.12 -2.39 -0.02 1.40 16 50 H 0.07 1.30 8.11 -2.39 -0.02 1.28 16 51 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -73.42 399.62 3.01 -70.41 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.32 Total: 30.83 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 7.69 Total: 8.42 kcal Atomic # 7 Polarization: -130.53 SS G_CDS: -6.98 Total: -137.51 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.05 Total: -20.01 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -73.42 3.01 -70.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717298219.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.155 kcal (2) G-P(sol) polarization free energy of solvation -73.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds