Wall clock time and date at job start Wed Apr 1 2020 04:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34859 * 125.96135 * 2 1 4 4 N 1.36318 * 106.68739 * 179.97438 * 3 2 1 5 5 C 1.35420 * 107.39805 * 0.05326 * 4 3 2 6 6 N 1.30092 * 108.62953 * 359.93137 * 5 4 3 7 7 C 1.51049 * 123.98211 * 179.89893 * 5 4 3 8 8 C 1.53403 * 108.20793 * 344.06046 * 7 5 4 9 9 H 1.09003 * 109.50549 * 288.83988 * 8 7 5 10 10 C 1.50696 * 109.50914 * 168.74953 * 8 7 5 11 11 O 1.21281 * 119.99878 * 262.20632 * 10 8 7 12 12 N 1.34781 * 120.00676 * 82.20403 * 10 8 7 13 13 C 1.46925 * 120.62199 * 4.09594 * 12 10 8 14 14 C 1.53631 * 108.53788 * 126.37422 * 13 12 10 15 15 C 1.53030 * 109.24407 * 54.85271 * 14 13 12 16 16 C 1.53001 * 109.46282 * 178.49224 * 15 14 13 17 17 N 1.46505 * 109.46331 * 58.53049 * 15 14 13 18 18 C 1.36936 * 119.99374 * 59.92987 * 17 15 14 19 19 H 1.08000 * 120.00513 * 0.02562 * 18 17 15 20 20 C 1.38820 * 119.99763 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99507 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99884 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47403 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46995 * 120.00235 * 22 20 18 25 25 H 1.48505 * 109.46903 * 239.99708 * 22 20 18 26 26 C 1.53044 * 109.53914 * 298.51114 * 15 14 13 27 27 C 1.46924 * 120.63197 * 184.38208 * 12 10 8 28 28 C 1.53098 * 109.26276 * 48.79503 * 8 7 5 29 29 C 1.46472 * 127.77581 * 180.02562 * 4 3 2 30 30 H 1.08997 * 109.47609 * 90.00098 * 1 2 3 31 31 H 1.09008 * 109.47157 * 210.00096 * 1 2 3 32 32 H 1.09005 * 109.47202 * 329.99377 * 1 2 3 33 33 H 1.07992 * 126.65937 * 359.94511 * 3 2 1 34 34 H 1.08996 * 109.71612 * 103.73753 * 7 5 4 35 35 H 1.08996 * 109.71203 * 224.38067 * 7 5 4 36 36 H 1.09000 * 109.58883 * 246.19929 * 13 12 10 37 37 H 1.08998 * 109.59120 * 6.62983 * 13 12 10 38 38 H 1.09000 * 109.63002 * 294.86116 * 14 13 12 39 39 H 1.09004 * 109.45479 * 174.74157 * 14 13 12 40 40 H 1.08996 * 109.47774 * 180.02562 * 16 15 14 41 41 H 1.09003 * 109.46703 * 300.07056 * 16 15 14 42 42 H 1.08999 * 109.47043 * 60.06697 * 16 15 14 43 43 H 0.96994 * 120.00306 * 239.92994 * 17 15 14 44 44 H 0.97004 * 119.99386 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.49571 * 301.41424 * 26 15 14 46 46 H 1.09000 * 109.52464 * 181.33037 * 26 15 14 47 47 H 1.08991 * 109.58610 * 353.36552 * 27 12 10 48 48 H 1.08994 * 109.58631 * 113.65445 * 27 12 10 49 49 H 1.09006 * 109.47015 * 170.52355 * 28 8 7 50 50 H 1.09003 * 109.43913 * 50.55479 * 28 8 7 51 51 H 1.09001 * 109.58449 * 282.65441 * 29 4 3 52 52 H 1.08998 * 109.58602 * 43.06793 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2989 1.0916 0.0000 4 7 3.5856 0.6416 0.0006 5 6 3.5413 -0.7119 -0.0003 6 7 2.2956 -1.0869 0.0001 7 6 4.7655 -1.5967 -0.0022 8 6 5.9744 -0.7416 -0.4031 9 1 5.9066 -0.4891 -1.4614 10 6 7.2433 -1.5141 -0.1503 11 8 7.8752 -1.3259 0.8676 12 7 7.6761 -2.4142 -1.0553 13 6 6.9716 -2.5892 -2.3327 14 6 7.9872 -2.4376 -3.4755 15 6 9.1430 -3.4163 -3.2562 16 6 10.1390 -3.2959 -4.4114 17 7 8.6210 -4.7841 -3.2027 18 6 7.9464 -5.3018 -4.2761 19 1 7.7995 -4.7020 -5.1621 20 6 7.4512 -6.5977 -4.2253 21 7 7.6298 -7.3284 -3.1452 22 14 6.5316 -7.3042 -5.6897 23 1 6.4660 -6.2879 -6.7703 24 1 7.2425 -8.5099 -6.1858 25 1 5.1545 -7.6764 -5.2767 26 6 9.8487 -3.0880 -1.9384 27 6 8.8576 -3.2432 -0.7806 28 6 5.9829 0.5430 0.4298 29 6 4.8148 1.4383 0.0013 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.9763 2.1222 -0.0008 34 1 4.9219 -2.0102 0.9940 35 1 4.6331 -2.4059 -0.7203 36 1 6.5221 -3.5815 -2.3691 37 1 6.1952 -1.8303 -2.4289 38 1 8.3719 -1.4178 -3.4906 39 1 7.5001 -2.6567 -4.4256 40 1 10.9621 -3.9933 -4.2557 41 1 9.6366 -3.5297 -5.3501 42 1 10.5282 -2.2786 -4.4511 43 1 8.7532 -5.3229 -2.4071 44 1 7.2841 -8.2341 -3.1099 45 1 10.2158 -2.0622 -1.9681 46 1 10.6864 -3.7703 -1.7940 47 1 9.3259 -2.9159 0.1475 48 1 8.5583 -4.2874 -0.6905 49 1 6.9228 1.0720 0.2720 50 1 5.8805 0.2915 1.4855 51 1 4.9995 1.8259 -1.0005 52 1 4.7130 2.2664 0.7027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717298220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:36 Heat of formation + Delta-G solvation = 31.922363 kcal Electronic energy + Delta-G solvation = -31889.215376 eV Core-core repulsion = 27889.471516 eV Total energy + Delta-G solvation = -3999.743860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.48937 -40.26313 -38.12041 -36.40844 -34.58403 -33.50824 -32.34055 -31.70191 -30.77984 -29.24592 -28.96299 -27.91240 -27.15858 -24.45947 -23.99125 -23.45590 -22.97128 -22.04754 -20.53956 -19.64087 -19.08600 -18.10786 -17.17552 -17.09417 -16.89759 -16.16724 -15.49072 -15.37848 -14.78215 -14.44084 -14.28860 -14.12454 -13.94163 -13.90661 -13.72458 -13.57454 -13.44558 -13.17470 -12.99316 -12.54185 -12.47158 -12.44441 -12.18631 -12.03756 -11.84535 -11.58825 -11.37073 -11.35410 -11.27916 -11.22187 -10.92654 -10.81802 -10.74459 -10.32657 -10.25983 -9.99000 -9.70033 -9.61686 -9.60124 -9.48539 -8.97213 -8.29030 -8.27697 -6.99640 -5.80307 -3.08917 1.91053 2.60143 2.66881 3.00142 3.15220 3.40755 3.46468 3.49259 4.06446 4.22225 4.32595 4.34722 4.55489 4.73278 4.80563 4.87974 4.90900 5.02696 5.12462 5.20758 5.26116 5.31942 5.37315 5.48092 5.48770 5.54555 5.55420 5.59859 5.64833 5.70466 5.75698 5.80069 5.84628 5.92805 6.00711 6.04077 6.12019 6.20745 6.22247 6.36740 6.40169 6.46908 6.52170 6.69393 6.69865 6.83536 6.96733 7.02793 7.04673 7.66979 7.68492 8.05208 8.29764 8.37832 9.49871 10.06021 10.41328 11.42132 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010791 B = 0.003262 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.065644 B = 8580.729074 C =10296.529179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.004 4.004 3 C -0.058 4.058 4 N -0.457 5.457 5 C 0.219 3.781 6 N -0.483 5.483 7 C -0.022 4.022 8 C -0.113 4.113 9 H 0.101 0.899 10 C 0.521 3.479 11 O -0.552 6.552 12 N -0.593 5.593 13 C 0.111 3.889 14 C -0.134 4.134 15 C 0.198 3.802 16 C -0.150 4.150 17 N -0.716 5.716 18 C -0.233 4.233 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.900 3.100 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.292 1.292 26 C -0.128 4.128 27 C 0.115 3.885 28 C -0.114 4.114 29 C 0.105 3.895 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.172 0.828 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.086 0.914 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 19.779 5.662 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.191 4.191 4 N -0.140 5.140 5 C -0.043 4.043 6 N -0.202 5.202 7 C -0.061 4.061 8 C -0.135 4.135 9 H 0.119 0.881 10 C 0.308 3.692 11 O -0.431 6.431 12 N -0.324 5.324 13 C -0.011 4.011 14 C -0.175 4.175 15 C 0.106 3.894 16 C -0.210 4.210 17 N -0.359 5.359 18 C -0.364 4.364 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.732 3.268 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.219 1.219 26 C -0.167 4.167 27 C -0.007 4.007 28 C -0.152 4.152 29 C -0.018 4.018 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.190 0.810 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.114 0.886 50 H 0.104 0.896 51 H 0.104 0.896 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.071 19.117 6.032 20.677 hybrid contribution -0.231 0.218 -0.840 0.898 sum -5.301 19.335 5.192 20.710 Atomic orbital electron populations 1.19995 0.87764 1.02432 1.02079 1.20805 0.96463 0.88318 1.07778 1.22258 0.82878 1.00275 1.13689 1.45374 1.06515 1.07436 1.54663 1.23088 0.94648 0.81434 1.05168 1.69977 0.99641 1.30339 1.20276 1.20081 0.85694 0.95570 1.04799 1.21431 0.93740 0.95908 1.02387 0.88055 1.20127 0.85876 0.79886 0.83353 1.90666 1.58070 1.66763 1.27572 1.48120 1.29353 1.37187 1.17783 1.21950 0.94289 1.03148 0.81744 1.22381 0.98188 0.98508 0.98384 1.19524 0.91138 0.86710 0.92020 1.22222 0.99605 0.98863 1.00267 1.42512 1.65999 1.09316 1.18041 1.19138 1.26827 0.96002 0.94473 0.91161 1.24693 1.01723 0.96980 0.97284 1.69657 1.51064 1.09796 1.27356 0.86224 0.79462 0.78973 0.82157 1.20664 1.22023 1.21919 1.22074 0.98066 1.01347 0.95191 1.21598 0.85432 0.95281 0.98387 1.21718 0.97721 0.94425 1.01377 1.22039 0.82084 0.94343 1.03292 0.91539 0.91236 0.91590 0.81037 0.88606 0.87666 0.88798 0.91334 0.93381 0.90618 0.93118 0.92545 0.94664 0.78130 0.93583 0.91998 0.90779 0.89878 0.90322 0.88649 0.89607 0.89573 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.42 36.00 0.38 -0.23 16 2 C 0.00 -0.06 7.10 -82.72 -0.59 -0.64 16 3 C -0.06 -0.61 11.55 -16.76 -0.19 -0.81 16 4 N -0.46 -4.97 3.13 -113.74 -0.36 -5.32 16 5 C 0.22 2.94 7.65 -155.24 -1.19 1.75 16 6 N -0.48 -7.38 11.24 -6.88 -0.08 -7.46 16 7 C -0.02 -0.28 5.58 -27.50 -0.15 -0.43 16 8 C -0.11 -1.27 1.71 -91.51 -0.16 -1.42 16 9 H 0.10 1.04 6.21 -51.93 -0.32 0.72 16 10 C 0.52 7.48 6.80 -10.99 -0.07 7.41 16 11 O -0.55 -9.41 15.64 5.56 0.09 -9.32 16 12 N -0.59 -8.92 2.97 -172.51 -0.51 -9.43 16 13 C 0.11 1.68 5.82 -3.48 -0.02 1.66 16 14 C -0.13 -2.11 4.72 -26.39 -0.12 -2.23 16 15 C 0.20 3.45 0.74 -131.78 -0.10 3.35 16 16 C -0.15 -2.54 8.44 37.16 0.31 -2.22 16 17 N -0.72 -15.75 4.13 -47.19 -0.19 -15.94 16 18 C -0.23 -5.80 8.68 -15.06 -0.13 -5.94 16 19 H 0.07 1.72 6.70 -52.49 -0.35 1.37 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -26.60 13.06 55.49 0.72 -25.87 16 22 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 C -0.13 -1.98 4.96 -26.61 -0.13 -2.11 16 27 C 0.12 1.84 6.16 -3.71 -0.02 1.81 16 28 C -0.11 -1.06 4.60 -26.53 -0.12 -1.18 16 29 C 0.10 0.80 6.98 -3.91 -0.03 0.77 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.10 1.24 8.11 -51.93 -0.42 0.82 16 35 H 0.11 1.38 7.85 -51.93 -0.41 0.97 16 36 H 0.09 1.73 7.74 -51.93 -0.40 1.33 16 37 H 0.07 0.87 5.36 -51.93 -0.28 0.59 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.28 7.31 -51.93 -0.38 0.90 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.02 7.27 -51.93 -0.38 0.65 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.38 9.21 6.47 -40.82 -0.26 8.95 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.08 1.31 7.00 -51.93 -0.36 0.95 16 48 H 0.08 1.40 6.95 -51.93 -0.36 1.04 16 49 H 0.10 0.81 8.12 -51.93 -0.42 0.39 16 50 H 0.09 0.90 8.11 -51.93 -0.42 0.48 16 51 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 399.43 15.07 6.02 6.02 Total: -1.00 -31.59 399.43 -10.33 -41.91 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -8.56 Total: 9.78 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -2.44 Total: -0.85 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.42 Total: -64.03 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.59 -10.33 -41.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717298220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.835 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds