Wall clock time and date at job start Wed Apr 1 2020 04:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34859 * 125.96135 * 2 1 4 4 N 1.36318 * 106.68739 * 179.97438 * 3 2 1 5 5 C 1.35420 * 107.39805 * 0.05326 * 4 3 2 6 6 N 1.30092 * 108.62953 * 359.93137 * 5 4 3 7 7 C 1.51049 * 123.98211 * 179.89893 * 5 4 3 8 8 C 1.53403 * 108.20793 * 344.06046 * 7 5 4 9 9 H 1.09003 * 109.50549 * 288.83988 * 8 7 5 10 10 C 1.50696 * 109.50914 * 168.74953 * 8 7 5 11 11 O 1.21281 * 119.99878 * 262.20632 * 10 8 7 12 12 N 1.34781 * 120.00676 * 82.20403 * 10 8 7 13 13 C 1.46925 * 120.62199 * 4.09594 * 12 10 8 14 14 C 1.53631 * 108.53788 * 126.37422 * 13 12 10 15 15 C 1.53030 * 109.24407 * 54.85271 * 14 13 12 16 16 C 1.53001 * 109.46282 * 178.49224 * 15 14 13 17 17 N 1.46505 * 109.46331 * 58.53049 * 15 14 13 18 18 C 1.36936 * 119.99374 * 59.92987 * 17 15 14 19 19 H 1.08000 * 120.00513 * 0.02562 * 18 17 15 20 20 C 1.38820 * 119.99763 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99507 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99884 * 180.02562 * 20 18 17 23 23 H 1.48489 * 109.47403 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46995 * 120.00235 * 22 20 18 25 25 H 1.48505 * 109.46903 * 239.99708 * 22 20 18 26 26 C 1.53044 * 109.53914 * 298.51114 * 15 14 13 27 27 C 1.46924 * 120.63197 * 184.38208 * 12 10 8 28 28 C 1.53098 * 109.26276 * 48.79503 * 8 7 5 29 29 C 1.46472 * 127.77581 * 180.02562 * 4 3 2 30 30 H 1.08997 * 109.47609 * 90.00098 * 1 2 3 31 31 H 1.09008 * 109.47157 * 210.00096 * 1 2 3 32 32 H 1.09005 * 109.47202 * 329.99377 * 1 2 3 33 33 H 1.07992 * 126.65937 * 359.94511 * 3 2 1 34 34 H 1.08996 * 109.71612 * 103.73753 * 7 5 4 35 35 H 1.08996 * 109.71203 * 224.38067 * 7 5 4 36 36 H 1.09000 * 109.58883 * 246.19929 * 13 12 10 37 37 H 1.08998 * 109.59120 * 6.62983 * 13 12 10 38 38 H 1.09000 * 109.63002 * 294.86116 * 14 13 12 39 39 H 1.09004 * 109.45479 * 174.74157 * 14 13 12 40 40 H 1.08996 * 109.47774 * 180.02562 * 16 15 14 41 41 H 1.09003 * 109.46703 * 300.07056 * 16 15 14 42 42 H 1.08999 * 109.47043 * 60.06697 * 16 15 14 43 43 H 0.96994 * 120.00306 * 239.92994 * 17 15 14 44 44 H 0.97004 * 119.99386 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.49571 * 301.41424 * 26 15 14 46 46 H 1.09000 * 109.52464 * 181.33037 * 26 15 14 47 47 H 1.08991 * 109.58610 * 353.36552 * 27 12 10 48 48 H 1.08994 * 109.58631 * 113.65445 * 27 12 10 49 49 H 1.09006 * 109.47015 * 170.52355 * 28 8 7 50 50 H 1.09003 * 109.43913 * 50.55479 * 28 8 7 51 51 H 1.09001 * 109.58449 * 282.65441 * 29 4 3 52 52 H 1.08998 * 109.58602 * 43.06793 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2989 1.0916 0.0000 4 7 3.5856 0.6416 0.0006 5 6 3.5413 -0.7119 -0.0003 6 7 2.2956 -1.0869 0.0001 7 6 4.7655 -1.5967 -0.0022 8 6 5.9744 -0.7416 -0.4031 9 1 5.9066 -0.4891 -1.4614 10 6 7.2433 -1.5141 -0.1503 11 8 7.8752 -1.3259 0.8676 12 7 7.6761 -2.4142 -1.0553 13 6 6.9716 -2.5892 -2.3327 14 6 7.9872 -2.4376 -3.4755 15 6 9.1430 -3.4163 -3.2562 16 6 10.1390 -3.2959 -4.4114 17 7 8.6210 -4.7841 -3.2027 18 6 7.9464 -5.3018 -4.2761 19 1 7.7995 -4.7020 -5.1621 20 6 7.4512 -6.5977 -4.2253 21 7 7.6298 -7.3284 -3.1452 22 14 6.5316 -7.3042 -5.6897 23 1 6.4660 -6.2879 -6.7703 24 1 7.2425 -8.5099 -6.1858 25 1 5.1545 -7.6764 -5.2767 26 6 9.8487 -3.0880 -1.9384 27 6 8.8576 -3.2432 -0.7806 28 6 5.9829 0.5430 0.4298 29 6 4.8148 1.4383 0.0013 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.9763 2.1222 -0.0008 34 1 4.9219 -2.0102 0.9940 35 1 4.6331 -2.4059 -0.7203 36 1 6.5221 -3.5815 -2.3691 37 1 6.1952 -1.8303 -2.4289 38 1 8.3719 -1.4178 -3.4906 39 1 7.5001 -2.6567 -4.4256 40 1 10.9621 -3.9933 -4.2557 41 1 9.6366 -3.5297 -5.3501 42 1 10.5282 -2.2786 -4.4511 43 1 8.7532 -5.3229 -2.4071 44 1 7.2841 -8.2341 -3.1099 45 1 10.2158 -2.0622 -1.9681 46 1 10.6864 -3.7703 -1.7940 47 1 9.3259 -2.9159 0.1475 48 1 8.5583 -4.2874 -0.6905 49 1 6.9228 1.0720 0.2720 50 1 5.8805 0.2915 1.4855 51 1 4.9995 1.8259 -1.0005 52 1 4.7130 2.2664 0.7027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717298220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:35 Heat of formation + Delta-G solvation = 13.940272 kcal Electronic energy + Delta-G solvation = -31889.995138 eV Core-core repulsion = 27889.471516 eV Total energy + Delta-G solvation = -4000.523622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.34935 -41.47456 -39.43991 -37.34297 -36.04620 -34.52920 -34.02951 -32.52003 -32.02944 -30.85169 -30.01684 -29.14917 -28.06687 -25.91694 -25.24919 -24.52700 -24.24346 -23.19491 -21.45234 -20.77347 -20.04871 -19.47793 -18.96545 -18.25321 -17.77138 -17.13559 -16.66108 -16.48806 -16.34017 -15.69250 -15.50031 -15.25957 -15.17734 -15.01433 -14.90909 -14.70426 -14.63590 -14.24866 -14.07417 -13.85093 -13.49687 -13.46302 -13.19192 -13.15359 -12.88647 -12.87530 -12.67436 -12.64865 -12.55861 -12.52492 -12.29278 -12.17456 -12.09708 -11.99793 -11.76591 -11.45934 -11.07357 -10.93187 -10.88445 -10.68365 -10.47385 -9.60924 -9.12628 -8.87713 -7.85146 -5.10129 1.07403 1.48540 1.49713 1.50673 1.58002 1.85474 1.98554 2.08072 2.61601 3.11848 3.40461 3.46999 3.49854 3.54392 3.79003 3.88565 3.90923 4.04654 4.06294 4.12921 4.21334 4.25537 4.29756 4.35102 4.44533 4.46156 4.50694 4.58857 4.66871 4.68799 4.75649 4.80152 4.84886 4.90832 4.91594 5.02765 5.03408 5.05974 5.07091 5.12897 5.17248 5.18948 5.35369 5.37847 5.38714 5.59202 5.67080 5.70284 5.89218 6.23768 6.37286 6.46217 7.10337 7.17243 7.44762 8.21785 8.44038 9.38773 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010791 B = 0.003262 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.065644 B = 8580.729074 C =10296.529179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.041 4.041 3 C -0.040 4.040 4 N -0.453 5.453 5 C 0.196 3.804 6 N -0.530 5.530 7 C -0.016 4.016 8 C -0.101 4.101 9 H 0.119 0.881 10 C 0.522 3.478 11 O -0.577 6.577 12 N -0.594 5.594 13 C 0.119 3.881 14 C -0.128 4.128 15 C 0.187 3.813 16 C -0.144 4.144 17 N -0.724 5.724 18 C -0.206 4.206 19 H 0.078 0.922 20 C -0.076 4.076 21 N -0.970 5.970 22 Si 0.953 3.047 23 H -0.265 1.265 24 H -0.303 1.303 25 H -0.303 1.303 26 C -0.118 4.118 27 C 0.118 3.882 28 C -0.109 4.109 29 C 0.105 3.895 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.213 0.787 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.371 0.629 44 H 0.244 0.756 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.050 0.950 49 H 0.110 0.890 50 H 0.069 0.931 51 H 0.111 0.889 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 24.226 4.790 25.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.169 4.169 3 C -0.174 4.174 4 N -0.135 5.135 5 C -0.067 4.067 6 N -0.250 5.250 7 C -0.056 4.056 8 C -0.123 4.123 9 H 0.137 0.863 10 C 0.311 3.689 11 O -0.458 6.458 12 N -0.325 5.325 13 C -0.003 4.003 14 C -0.168 4.168 15 C 0.097 3.903 16 C -0.203 4.203 17 N -0.364 5.364 18 C -0.338 4.338 19 H 0.096 0.904 20 C -0.268 4.268 21 N -0.622 5.622 22 Si 0.785 3.215 23 H -0.189 1.189 24 H -0.231 1.231 25 H -0.231 1.231 26 C -0.156 4.156 27 C -0.004 4.004 28 C -0.147 4.147 29 C -0.016 4.016 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.230 0.770 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.204 0.796 44 H 0.053 0.947 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.068 0.932 49 H 0.128 0.872 50 H 0.088 0.912 51 H 0.129 0.871 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.042 23.632 5.127 24.702 hybrid contribution -0.201 -1.064 -0.507 1.196 sum -5.243 22.568 4.620 23.625 Atomic orbital electron populations 1.20047 0.86242 1.03082 1.02542 1.21398 0.97865 0.88471 1.09188 1.22869 0.82178 1.01436 1.10879 1.45594 1.07804 1.06718 1.53411 1.22972 0.94141 0.82789 1.06762 1.69896 1.01042 1.32584 1.21504 1.19924 0.86568 0.95552 1.03550 1.21391 0.90954 0.96114 1.03813 0.86347 1.20643 0.86380 0.79454 0.82457 1.90655 1.59097 1.67582 1.28427 1.48137 1.29107 1.37221 1.18048 1.21806 0.94798 1.01973 0.81748 1.22306 0.97240 0.99494 0.97794 1.19871 0.92143 0.84692 0.93577 1.22138 0.98765 1.00648 0.98787 1.42698 1.65792 1.11191 1.16760 1.19439 1.24174 0.95362 0.94827 0.90432 1.25313 1.04108 0.98051 0.99313 1.69802 1.53497 1.09666 1.29272 0.85347 0.77644 0.78219 0.80288 1.18904 1.23078 1.23091 1.21993 0.97478 1.02623 0.93540 1.21442 0.86088 0.93991 0.98917 1.21697 0.99406 0.93637 1.00004 1.22317 0.79752 0.93937 1.05567 0.91124 0.92647 0.88874 0.77026 0.90115 0.89187 0.92799 0.88411 0.90197 0.91645 0.94229 0.94038 0.91295 0.79645 0.94673 0.89576 0.90933 0.89709 0.93192 0.87204 0.91186 0.87081 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.42 71.23 0.74 -0.33 16 2 C -0.04 -0.97 7.10 41.40 0.29 -0.68 16 3 C -0.04 -0.71 11.55 83.22 0.96 0.25 16 4 N -0.45 -8.57 3.13 -513.76 -1.61 -10.18 16 5 C 0.20 5.13 7.65 138.24 1.06 6.19 16 6 N -0.53 -16.31 11.24 -175.69 -1.98 -18.29 16 7 C -0.02 -0.42 5.58 30.09 0.17 -0.25 16 8 C -0.10 -2.09 1.71 -11.37 -0.02 -2.11 16 9 H 0.12 2.05 6.21 -2.39 -0.01 2.03 16 10 C 0.52 14.42 6.80 87.66 0.60 15.02 16 11 O -0.58 -19.17 15.64 -3.03 -0.05 -19.22 16 12 N -0.59 -17.43 2.97 -818.07 -2.43 -19.85 16 13 C 0.12 3.49 5.82 86.51 0.50 3.99 16 14 C -0.13 -3.73 4.72 30.82 0.15 -3.59 16 15 C 0.19 6.26 0.74 3.63 0.00 6.26 16 16 C -0.14 -4.55 8.44 71.98 0.61 -3.94 16 17 N -0.72 -32.20 4.13 -303.22 -1.25 -33.45 16 18 C -0.21 -10.30 8.68 84.04 0.73 -9.58 16 19 H 0.08 3.74 6.70 -2.91 -0.02 3.72 16 20 C -0.08 -4.17 5.50 84.86 0.47 -3.70 16 21 N -0.97 -57.74 13.06 21.65 0.28 -57.45 16 22 Si 0.95 45.19 29.55 68.60 2.03 47.22 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 25 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 26 C -0.12 -3.46 4.96 30.67 0.15 -3.31 16 27 C 0.12 3.77 6.16 86.36 0.53 4.31 16 28 C -0.11 -1.71 4.60 30.72 0.14 -1.57 16 29 C 0.10 1.14 6.98 86.48 0.60 1.74 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.21 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.08 2.21 8.11 -2.39 -0.02 2.19 16 35 H 0.09 2.48 7.85 -2.39 -0.02 2.46 16 36 H 0.05 2.04 7.74 -2.39 -0.02 2.02 16 37 H 0.10 2.27 5.36 -2.39 -0.01 2.26 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 2.06 7.31 -2.38 -0.02 2.05 16 40 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.04 1.42 7.27 -2.39 -0.02 1.40 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 43 H 0.37 18.46 6.47 -92.71 -0.60 17.86 16 44 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 45 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.08 2.68 7.00 -2.39 -0.02 2.66 16 48 H 0.05 1.88 6.95 -2.39 -0.02 1.86 16 49 H 0.11 1.45 8.12 -2.38 -0.02 1.43 16 50 H 0.07 1.34 8.11 -2.39 -0.02 1.32 16 51 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.12 0.71 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -71.94 399.43 3.01 -68.94 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.32 Total: 33.58 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 7.68 Total: 8.71 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -6.98 Total: -139.23 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.22 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.94 3.01 -68.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717298220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.879 kcal (2) G-P(sol) polarization free energy of solvation -71.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds