Wall clock time and date at job start Wed Apr 1 2020 03:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30827 * 125.90058 * 2 1 4 4 N 1.40082 * 108.20855 * 179.97438 * 3 2 1 5 5 H 0.97004 * 126.04023 * 179.97438 * 4 3 2 6 6 C 1.34945 * 107.92324 * 359.75660 * 4 3 2 7 7 C 1.50700 * 126.12955 * 180.23717 * 6 4 3 8 8 C 1.35323 * 107.74673 * 0.38951 * 6 4 3 9 9 C 1.50696 * 126.04172 * 179.87164 * 8 6 4 10 10 C 1.53003 * 109.47284 * 269.71654 * 9 8 6 11 11 C 1.50697 * 109.47194 * 179.97438 * 10 9 8 12 12 O 1.21285 * 120.00163 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00019 * 180.27131 * 11 10 9 14 14 C 1.46502 * 119.99852 * 179.72603 * 13 11 10 15 15 H 1.08998 * 115.55182 * 350.68949 * 14 13 11 16 16 C 1.53032 * 117.49785 * 136.41735 * 14 13 11 17 17 C 1.52811 * 117.49953 * 205.00101 * 14 13 11 18 18 C 1.53184 * 117.71192 * 144.90260 * 17 14 13 19 19 C 1.53355 * 108.77167 * 158.88941 * 18 17 14 20 20 N 1.46837 * 108.81454 * 51.30418 * 19 18 17 21 21 C 1.36937 * 120.37959 * 123.07794 * 20 19 18 22 22 H 1.07999 * 120.00093 * 208.92038 * 21 20 19 23 23 C 1.38817 * 120.00277 * 28.92734 * 21 20 19 24 24 N 1.31620 * 119.99604 * 17.82648 * 23 21 20 25 25 Si 1.86796 * 120.00041 * 197.83650 * 23 21 20 26 26 H 1.48496 * 109.47463 * 59.99536 * 25 23 21 27 27 H 1.48501 * 109.46847 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47032 * 299.99468 * 25 23 21 29 29 C 1.46842 * 119.23772 * 303.10254 * 20 19 18 30 30 C 1.53180 * 117.71776 * 0.14643 * 17 14 13 31 31 H 1.09000 * 109.46988 * 270.02428 * 1 2 3 32 32 H 1.08999 * 109.46824 * 30.02726 * 1 2 3 33 33 H 1.09004 * 109.46632 * 150.02443 * 1 2 3 34 34 H 1.08998 * 109.47403 * 270.18229 * 7 6 4 35 35 H 1.09005 * 109.46593 * 30.18351 * 7 6 4 36 36 H 1.09004 * 109.47117 * 150.17616 * 7 6 4 37 37 H 1.08999 * 109.47320 * 149.71488 * 9 8 6 38 38 H 1.09004 * 109.46983 * 29.71717 * 9 8 6 39 39 H 1.09006 * 109.46844 * 60.00027 * 10 9 8 40 40 H 1.08994 * 109.47223 * 300.00153 * 10 9 8 41 41 H 0.96999 * 120.00066 * 359.73509 * 13 11 10 42 42 H 1.09000 * 117.50169 * 214.95431 * 16 14 13 43 43 H 1.09000 * 117.50260 * 0.02562 * 16 14 13 44 44 H 1.09002 * 109.59098 * 278.67486 * 18 17 14 45 45 H 1.08998 * 109.59004 * 39.10762 * 18 17 14 46 46 H 1.08998 * 109.57699 * 291.51138 * 19 18 17 47 47 H 1.09002 * 109.58050 * 171.10860 * 19 18 17 48 48 H 0.97003 * 119.99726 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.57946 * 297.10757 * 29 20 19 50 50 H 1.09002 * 109.58672 * 176.70087 * 29 20 19 51 51 H 1.09002 * 109.58841 * 320.89873 * 30 17 14 52 52 H 1.08994 * 109.59255 * 81.18468 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0597 0.0000 4 7 3.6088 0.6340 0.0006 5 1 4.3909 1.2079 0.0004 6 6 3.6143 -0.7154 0.0064 7 6 4.8350 -1.5990 0.0141 8 6 2.3271 -1.1331 0.0006 9 6 1.8599 -2.5658 0.0013 10 6 1.7024 -3.0516 -1.4410 11 6 1.2358 -4.4845 -1.4403 12 8 1.0472 -5.0604 -0.3897 13 7 1.0327 -5.1276 -2.6072 14 6 0.5848 -6.5225 -2.6064 15 1 0.5901 -7.0175 -1.6353 16 6 -0.5197 -6.9105 -3.5920 17 6 0.9177 -7.3711 -3.8329 18 6 1.2366 -8.8526 -3.6089 19 6 1.0180 -9.6089 -4.9249 20 7 1.7508 -8.9197 -5.9946 21 6 2.6866 -9.5902 -6.7361 22 1 3.5216 -9.0550 -7.1636 23 6 2.5621 -10.9579 -6.9385 24 7 1.4043 -11.5503 -6.7362 25 14 4.0377 -11.9575 -7.4976 26 1 5.1243 -11.8411 -6.4921 27 1 3.6453 -13.3827 -7.6388 28 1 4.5168 -11.4435 -8.8058 29 6 1.4690 -7.5032 -6.2595 30 6 1.6970 -6.7042 -4.9706 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8903 -0.5135 34 1 5.1346 -1.8138 -1.0116 35 1 5.6485 -1.0901 0.5313 36 1 4.6049 -2.5321 0.5285 37 1 0.9009 -2.6350 0.5147 38 1 2.5931 -3.1868 0.5159 39 1 2.6615 -2.9824 -1.9544 40 1 0.9692 -2.4306 -1.9556 41 1 1.1833 -4.6670 -3.4474 42 1 -1.2414 -7.6609 -3.2694 43 1 -0.9127 -6.1280 -4.2412 44 1 2.2747 -8.9594 -3.2942 45 1 0.5765 -9.2565 -2.8414 46 1 -0.0454 -9.6268 -5.1636 47 1 1.3894 -10.6289 -4.8261 48 1 1.3174 -12.5061 -6.8772 49 1 0.4335 -7.3906 -6.5808 50 1 2.1373 -7.1373 -7.0391 51 1 1.3424 -5.6824 -5.1065 52 1 2.7596 -6.6929 -4.7282 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752430488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:46 Heat of formation + Delta-G solvation = 61.637550 kcal Electronic energy + Delta-G solvation = -30039.435195 eV Core-core repulsion = 26040.979882 eV Total energy + Delta-G solvation = -3998.455313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.69834 -39.95131 -38.43163 -35.51001 -34.39827 -33.68507 -33.08748 -31.61921 -30.66546 -29.97913 -28.42943 -28.13116 -27.36241 -24.53428 -24.32295 -22.46737 -21.84622 -20.80760 -20.45987 -20.21132 -19.51372 -18.21008 -17.68522 -17.08877 -16.44540 -15.99877 -15.66122 -15.44535 -14.81903 -14.38949 -14.19767 -14.06970 -13.79762 -13.66974 -13.52008 -13.47674 -13.24670 -13.01387 -12.97993 -12.73446 -12.67554 -12.55810 -12.28081 -12.23123 -12.08268 -11.63022 -11.57871 -11.33141 -11.26454 -10.95121 -10.72212 -10.71098 -10.45106 -10.33216 -9.96754 -9.91574 -9.67847 -9.61377 -9.55242 -9.33565 -8.65689 -8.44713 -8.42169 -6.64107 -5.78957 -3.22194 1.52533 2.36302 2.52498 2.61802 3.18405 3.37857 3.44030 3.45213 4.20358 4.28387 4.34730 4.49489 4.65079 4.68129 4.84569 4.94449 5.01059 5.02583 5.09422 5.14996 5.16446 5.29080 5.32790 5.37665 5.39172 5.42958 5.44562 5.50499 5.64415 5.65141 5.75802 5.89656 5.95538 6.04271 6.07534 6.08255 6.12955 6.29315 6.39594 6.44505 6.60336 6.63023 6.65297 6.70653 6.84308 6.96208 6.96441 7.37170 7.38718 7.54388 7.67496 7.79098 8.25569 8.46538 9.21757 9.85411 10.42074 11.28725 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.001901 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.220547 B =14725.827451 C =15419.287941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.085 3.915 3 N -0.298 5.298 4 N -0.478 5.478 5 H 0.437 0.563 6 C 0.092 3.908 7 C -0.097 4.097 8 C -0.234 4.234 9 C -0.022 4.022 10 C -0.134 4.134 11 C 0.513 3.487 12 O -0.544 6.544 13 N -0.698 5.698 14 C 0.069 3.931 15 H 0.131 0.869 16 C -0.183 4.183 17 C -0.097 4.097 18 C -0.106 4.106 19 C 0.173 3.827 20 N -0.589 5.589 21 C -0.254 4.254 22 H 0.063 0.937 23 C 0.003 3.997 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.283 1.283 29 C 0.150 3.850 30 C -0.096 4.096 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.400 0.600 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.018 0.982 47 H 0.090 0.910 48 H 0.254 0.746 49 H 0.019 0.981 50 H 0.054 0.946 51 H 0.045 0.955 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 22.124 13.002 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 N -0.122 5.122 4 N -0.186 5.186 5 H 0.281 0.719 6 C -0.036 4.036 7 C -0.155 4.155 8 C -0.245 4.245 9 C -0.061 4.061 10 C -0.174 4.174 11 C 0.300 3.700 12 O -0.422 6.422 13 N -0.347 5.347 14 C -0.037 4.037 15 H 0.149 0.851 16 C -0.222 4.222 17 C -0.099 4.099 18 C -0.145 4.145 19 C 0.047 3.953 20 N -0.311 5.311 21 C -0.384 4.384 22 H 0.081 0.919 23 C -0.196 4.196 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.209 1.209 29 C 0.023 3.977 30 C -0.136 4.136 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.235 0.765 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.036 0.964 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.037 0.963 50 H 0.072 0.928 51 H 0.063 0.937 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.259 22.802 13.718 26.640 hybrid contribution 1.200 -0.781 -0.812 1.646 sum 2.459 22.021 12.906 25.642 Atomic orbital electron populations 1.20224 0.86676 1.03432 1.03195 1.22267 0.96980 0.90201 0.98715 1.77282 0.86503 1.22387 1.26003 1.46153 1.07294 1.04861 1.60338 0.71947 1.20938 0.97063 0.84884 1.00741 1.20526 0.92710 0.98596 1.03713 1.19726 0.91113 0.96289 1.17368 1.19567 1.02544 0.89411 0.94599 1.21674 1.03211 0.92626 0.99923 1.20720 0.76960 0.88701 0.83588 1.90689 1.51649 1.68579 1.31245 1.45474 1.67989 1.12626 1.08606 1.21896 1.02557 0.82372 0.96838 0.85125 1.23520 0.92775 1.03281 1.02588 1.21941 0.96310 0.96229 0.95371 1.21877 1.00577 0.91434 1.00622 1.20766 0.94417 0.96580 0.83534 1.43962 1.45375 1.05623 1.36185 1.19134 1.00711 0.90985 1.27561 0.91884 1.25052 0.96315 0.98250 1.00001 1.70026 1.21774 1.10016 1.52684 0.86388 0.82623 0.79243 0.78624 1.21037 1.21648 1.20902 1.20838 0.97626 0.86108 0.93137 1.21616 0.99125 0.96683 0.96153 0.90362 0.90864 0.90206 0.89875 0.91081 0.89168 0.90359 0.90594 0.89088 0.89017 0.76484 0.88418 0.89130 0.92163 0.93034 0.96370 0.89195 0.93568 0.96327 0.92790 0.93672 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.12 36.01 0.36 -0.18 16 2 C 0.09 0.82 7.22 -82.41 -0.59 0.23 16 3 N -0.30 -3.16 12.70 33.67 0.43 -2.73 16 4 N -0.48 -3.85 7.36 33.48 0.25 -3.60 16 5 H 0.44 2.18 8.96 -182.61 -1.64 0.54 16 6 C 0.09 0.73 7.21 -82.26 -0.59 0.13 16 7 C -0.10 -0.50 10.22 36.01 0.37 -0.13 16 8 C -0.23 -2.11 5.35 -105.05 -0.56 -2.67 16 9 C -0.02 -0.20 4.45 -27.88 -0.12 -0.32 16 10 C -0.13 -1.13 5.68 -27.88 -0.16 -1.29 16 11 C 0.51 6.18 7.83 -10.99 -0.09 6.09 16 12 O -0.54 -8.58 15.55 5.55 0.09 -8.50 16 13 N -0.70 -8.24 5.35 -53.88 -0.29 -8.53 16 14 C 0.07 0.98 6.14 -68.01 -0.42 0.56 16 15 H 0.13 2.05 7.40 -51.93 -0.38 1.66 16 16 C -0.18 -2.61 9.87 -26.79 -0.26 -2.87 16 17 C -0.10 -1.56 1.94 -154.50 -0.30 -1.86 16 18 C -0.11 -1.99 5.83 -26.45 -0.15 -2.14 16 19 C 0.17 4.04 5.40 -3.67 -0.02 4.02 16 20 N -0.59 -14.41 2.94 -172.26 -0.51 -14.91 16 21 C -0.25 -6.86 9.54 -15.06 -0.14 -7.00 16 22 H 0.06 1.67 7.89 -52.49 -0.41 1.25 16 23 C 0.00 0.07 4.89 -17.43 -0.09 -0.01 16 24 N -0.90 -25.85 11.23 55.49 0.62 -25.23 16 25 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 C 0.15 3.01 6.52 -3.67 -0.02 2.99 16 30 C -0.10 -1.55 5.37 -26.45 -0.14 -1.69 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.50 7.92 -51.93 -0.41 0.08 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.48 7.14 -51.93 -0.37 0.11 16 37 H 0.08 0.75 7.88 -51.93 -0.41 0.34 16 38 H 0.08 0.72 7.10 -51.93 -0.37 0.35 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.40 3.92 7.12 -40.82 -0.29 3.63 16 42 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 2.37 5.93 -51.93 -0.31 2.06 16 48 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 51 H 0.04 0.59 6.75 -51.93 -0.35 0.24 16 52 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 415.70 15.07 6.26 6.26 Total: -1.00 -33.39 415.70 -11.10 -44.49 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -9.98 Total: 2.50 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.94 Total: -6.17 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.50 Total: -55.01 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.39 -11.10 -44.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752430488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.124 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds