Wall clock time and date at job start Wed Apr 1 2020 03:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30827 * 125.90058 * 2 1 4 4 N 1.40082 * 108.20855 * 179.97438 * 3 2 1 5 5 H 0.97004 * 126.04023 * 179.97438 * 4 3 2 6 6 C 1.34945 * 107.92324 * 359.75660 * 4 3 2 7 7 C 1.50700 * 126.12955 * 180.23717 * 6 4 3 8 8 C 1.35323 * 107.74673 * 0.38951 * 6 4 3 9 9 C 1.50696 * 126.04172 * 179.87164 * 8 6 4 10 10 C 1.53003 * 109.47284 * 269.71654 * 9 8 6 11 11 C 1.50697 * 109.47194 * 179.97438 * 10 9 8 12 12 O 1.21285 * 120.00163 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00019 * 180.27131 * 11 10 9 14 14 C 1.46502 * 119.99852 * 179.72603 * 13 11 10 15 15 H 1.08998 * 115.55182 * 350.68949 * 14 13 11 16 16 C 1.53032 * 117.49785 * 136.41735 * 14 13 11 17 17 C 1.52811 * 117.49953 * 205.00101 * 14 13 11 18 18 C 1.53184 * 117.71192 * 144.90260 * 17 14 13 19 19 C 1.53355 * 108.77167 * 158.88941 * 18 17 14 20 20 N 1.46837 * 108.81454 * 51.30418 * 19 18 17 21 21 C 1.36937 * 120.37959 * 123.07794 * 20 19 18 22 22 H 1.07999 * 120.00093 * 208.92038 * 21 20 19 23 23 C 1.38817 * 120.00277 * 28.92734 * 21 20 19 24 24 N 1.31620 * 119.99604 * 17.82648 * 23 21 20 25 25 Si 1.86796 * 120.00041 * 197.83650 * 23 21 20 26 26 H 1.48496 * 109.47463 * 59.99536 * 25 23 21 27 27 H 1.48501 * 109.46847 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47032 * 299.99468 * 25 23 21 29 29 C 1.46842 * 119.23772 * 303.10254 * 20 19 18 30 30 C 1.53180 * 117.71776 * 0.14643 * 17 14 13 31 31 H 1.09000 * 109.46988 * 270.02428 * 1 2 3 32 32 H 1.08999 * 109.46824 * 30.02726 * 1 2 3 33 33 H 1.09004 * 109.46632 * 150.02443 * 1 2 3 34 34 H 1.08998 * 109.47403 * 270.18229 * 7 6 4 35 35 H 1.09005 * 109.46593 * 30.18351 * 7 6 4 36 36 H 1.09004 * 109.47117 * 150.17616 * 7 6 4 37 37 H 1.08999 * 109.47320 * 149.71488 * 9 8 6 38 38 H 1.09004 * 109.46983 * 29.71717 * 9 8 6 39 39 H 1.09006 * 109.46844 * 60.00027 * 10 9 8 40 40 H 1.08994 * 109.47223 * 300.00153 * 10 9 8 41 41 H 0.96999 * 120.00066 * 359.73509 * 13 11 10 42 42 H 1.09000 * 117.50169 * 214.95431 * 16 14 13 43 43 H 1.09000 * 117.50260 * 0.02562 * 16 14 13 44 44 H 1.09002 * 109.59098 * 278.67486 * 18 17 14 45 45 H 1.08998 * 109.59004 * 39.10762 * 18 17 14 46 46 H 1.08998 * 109.57699 * 291.51138 * 19 18 17 47 47 H 1.09002 * 109.58050 * 171.10860 * 19 18 17 48 48 H 0.97003 * 119.99726 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.57946 * 297.10757 * 29 20 19 50 50 H 1.09002 * 109.58672 * 176.70087 * 29 20 19 51 51 H 1.09002 * 109.58841 * 320.89873 * 30 17 14 52 52 H 1.08994 * 109.59255 * 81.18468 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0597 0.0000 4 7 3.6088 0.6340 0.0006 5 1 4.3909 1.2079 0.0004 6 6 3.6143 -0.7154 0.0064 7 6 4.8350 -1.5990 0.0141 8 6 2.3271 -1.1331 0.0006 9 6 1.8599 -2.5658 0.0013 10 6 1.7024 -3.0516 -1.4410 11 6 1.2358 -4.4845 -1.4403 12 8 1.0472 -5.0604 -0.3897 13 7 1.0327 -5.1276 -2.6072 14 6 0.5848 -6.5225 -2.6064 15 1 0.5901 -7.0175 -1.6353 16 6 -0.5197 -6.9105 -3.5920 17 6 0.9177 -7.3711 -3.8329 18 6 1.2366 -8.8526 -3.6089 19 6 1.0180 -9.6089 -4.9249 20 7 1.7508 -8.9197 -5.9946 21 6 2.6866 -9.5902 -6.7361 22 1 3.5216 -9.0550 -7.1636 23 6 2.5621 -10.9579 -6.9385 24 7 1.4043 -11.5503 -6.7362 25 14 4.0377 -11.9575 -7.4976 26 1 5.1243 -11.8411 -6.4921 27 1 3.6453 -13.3827 -7.6388 28 1 4.5168 -11.4435 -8.8058 29 6 1.4690 -7.5032 -6.2595 30 6 1.6970 -6.7042 -4.9706 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8903 -0.5135 34 1 5.1346 -1.8138 -1.0116 35 1 5.6485 -1.0901 0.5313 36 1 4.6049 -2.5321 0.5285 37 1 0.9009 -2.6350 0.5147 38 1 2.5931 -3.1868 0.5159 39 1 2.6615 -2.9824 -1.9544 40 1 0.9692 -2.4306 -1.9556 41 1 1.1833 -4.6670 -3.4474 42 1 -1.2414 -7.6609 -3.2694 43 1 -0.9127 -6.1280 -4.2412 44 1 2.2747 -8.9594 -3.2942 45 1 0.5765 -9.2565 -2.8414 46 1 -0.0454 -9.6268 -5.1636 47 1 1.3894 -10.6289 -4.8261 48 1 1.3174 -12.5061 -6.8772 49 1 0.4335 -7.3906 -6.5808 50 1 2.1373 -7.1373 -7.0391 51 1 1.3424 -5.6824 -5.1065 52 1 2.7596 -6.6929 -4.7282 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752430488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:45 Heat of formation + Delta-G solvation = 41.129167 kcal Electronic energy + Delta-G solvation = -30040.324505 eV Core-core repulsion = 26040.979882 eV Total energy + Delta-G solvation = -3999.344623 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.31938 -41.04621 -39.69067 -37.11334 -35.11682 -34.42053 -34.24891 -33.30283 -31.67762 -31.23453 -29.91661 -28.83826 -27.95616 -26.22018 -25.25931 -24.03102 -23.09225 -22.25408 -21.26987 -21.04612 -20.14908 -19.76774 -18.49351 -18.26647 -17.74460 -17.21394 -16.69869 -16.46507 -16.09889 -15.72057 -15.38425 -15.12196 -14.97949 -14.85764 -14.74532 -14.45492 -14.12958 -14.11240 -13.83319 -13.68592 -13.52819 -13.29332 -13.22780 -13.18325 -13.06376 -12.88260 -12.83135 -12.65442 -12.54017 -12.47940 -12.25990 -11.99788 -11.94026 -11.76208 -11.37776 -11.33648 -11.23481 -10.92242 -10.62705 -10.44572 -10.17958 -9.58694 -9.29190 -8.60028 -7.84389 -5.30486 0.91768 1.47363 1.50168 1.56508 1.67706 1.70504 1.99400 2.24199 2.53019 3.00095 3.30409 3.66640 3.71725 3.77459 3.84761 3.91118 3.93183 4.03390 4.17025 4.18044 4.23253 4.32690 4.53851 4.56104 4.59730 4.69309 4.73450 4.75866 4.77140 4.82354 4.85353 4.87612 4.95972 5.03010 5.05214 5.05722 5.12540 5.15248 5.19547 5.20817 5.30288 5.34876 5.40540 5.40989 5.55745 5.62385 5.67708 5.78568 5.79855 6.42973 6.46415 6.63554 6.76668 7.18224 7.34233 7.91131 8.41935 9.20425 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.001901 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.220547 B =14725.827451 C =15419.287941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.074 3.926 3 N -0.334 5.334 4 N -0.475 5.475 5 H 0.448 0.552 6 C 0.098 3.902 7 C -0.096 4.096 8 C -0.251 4.251 9 C -0.015 4.015 10 C -0.123 4.123 11 C 0.514 3.486 12 O -0.584 6.584 13 N -0.690 5.690 14 C 0.088 3.912 15 H 0.117 0.883 16 C -0.172 4.172 17 C -0.116 4.116 18 C -0.094 4.094 19 C 0.181 3.819 20 N -0.608 5.608 21 C -0.262 4.262 22 H 0.065 0.935 23 C -0.052 4.052 24 N -0.933 5.933 25 Si 0.964 3.036 26 H -0.280 1.280 27 H -0.296 1.296 28 H -0.274 1.274 29 C 0.144 3.856 30 C -0.081 4.081 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.413 0.587 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.047 0.953 45 H 0.064 0.936 46 H -0.002 1.002 47 H 0.052 0.948 48 H 0.249 0.751 49 H 0.016 0.984 50 H 0.054 0.946 51 H 0.086 0.914 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 24.330 13.078 27.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 N -0.158 5.158 4 N -0.184 5.184 5 H 0.294 0.706 6 C -0.031 4.031 7 C -0.154 4.154 8 C -0.262 4.262 9 C -0.054 4.054 10 C -0.162 4.162 11 C 0.303 3.697 12 O -0.464 6.464 13 N -0.340 5.340 14 C -0.018 4.018 15 H 0.135 0.865 16 C -0.210 4.210 17 C -0.118 4.118 18 C -0.134 4.134 19 C 0.055 3.945 20 N -0.332 5.332 21 C -0.392 4.392 22 H 0.083 0.917 23 C -0.247 4.247 24 N -0.579 5.579 25 Si 0.792 3.208 26 H -0.206 1.206 27 H -0.222 1.222 28 H -0.200 1.200 29 C 0.018 3.982 30 C -0.120 4.120 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.251 0.749 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.016 0.984 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.034 0.966 50 H 0.073 0.927 51 H 0.104 0.896 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.147 25.073 13.778 28.690 hybrid contribution 0.930 -1.425 -0.816 1.887 sum 3.076 23.648 12.962 27.142 Atomic orbital electron populations 1.20301 0.85500 1.04040 1.03707 1.22660 0.98007 0.90245 0.98272 1.77225 0.87649 1.23365 1.27528 1.46199 1.07104 1.05260 1.59848 0.70624 1.21357 0.97720 0.84992 0.99074 1.20627 0.92037 0.98088 1.04693 1.19781 0.91630 0.96036 1.18745 1.19442 1.01778 0.89356 0.94801 1.21659 1.04528 0.90056 1.00002 1.21326 0.75824 0.89755 0.82769 1.90684 1.53328 1.69717 1.32689 1.45403 1.67646 1.11512 1.09428 1.21581 1.01714 0.83250 0.95300 0.86523 1.23594 0.91752 1.03389 1.02290 1.21781 0.98354 0.94639 0.96982 1.21625 1.00188 0.93404 0.98150 1.20521 0.92757 0.95540 0.85690 1.44231 1.45213 1.07314 1.36400 1.19471 1.01258 0.91506 1.26985 0.91696 1.25794 0.98615 0.99338 1.00984 1.70179 1.23604 1.09740 1.54422 0.85392 0.79583 0.77342 0.78451 1.20585 1.22186 1.19998 1.21019 0.97397 0.84236 0.95502 1.21431 0.99015 0.97958 0.93604 0.89894 0.90543 0.89255 0.88679 0.89334 0.89310 0.91402 0.91347 0.87183 0.87086 0.74904 0.88503 0.87232 0.93383 0.91723 0.98357 0.92922 0.94174 0.96554 0.92716 0.89581 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.12 71.24 0.72 -0.28 16 2 C 0.07 1.34 7.22 43.11 0.31 1.65 16 3 N -0.33 -6.71 12.70 -47.38 -0.60 -7.31 16 4 N -0.47 -6.88 7.36 -48.00 -0.35 -7.23 16 5 H 0.45 3.75 8.96 -213.33 -1.91 1.84 16 6 C 0.10 1.34 7.21 41.41 0.30 1.64 16 7 C -0.10 -0.73 10.22 71.24 0.73 0.00 16 8 C -0.25 -4.09 5.35 -20.14 -0.11 -4.20 16 9 C -0.01 -0.24 4.45 29.85 0.13 -0.11 16 10 C -0.12 -1.70 5.68 29.85 0.17 -1.53 16 11 C 0.51 11.05 7.83 87.66 0.69 11.74 16 12 O -0.58 -17.61 15.55 -3.04 -0.05 -17.65 16 13 N -0.69 -14.03 5.35 -442.78 -2.37 -16.39 16 14 C 0.09 2.30 6.14 44.94 0.28 2.57 16 15 H 0.12 3.48 7.40 -2.39 -0.02 3.46 16 16 C -0.17 -4.44 9.87 30.55 0.30 -4.14 16 17 C -0.12 -3.52 1.94 -52.17 -0.10 -3.63 16 18 C -0.09 -3.55 5.83 30.77 0.18 -3.37 16 19 C 0.18 8.67 5.40 86.43 0.47 9.14 16 20 N -0.61 -30.02 2.94 -698.89 -2.05 -32.07 16 21 C -0.26 -14.27 9.54 84.03 0.80 -13.46 16 22 H 0.07 3.43 7.89 -2.91 -0.02 3.41 16 23 C -0.05 -2.89 4.89 84.86 0.41 -2.48 16 24 N -0.93 -55.26 11.23 21.65 0.24 -55.02 16 25 Si 0.96 44.73 29.59 68.60 2.03 46.76 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 28 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 29 C 0.14 5.62 6.52 86.43 0.56 6.19 16 30 C -0.08 -2.40 5.37 30.77 0.17 -2.24 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 0.95 7.92 -2.38 -0.02 0.93 16 34 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.09 0.74 7.14 -2.39 -0.02 0.72 16 37 H 0.07 1.23 7.88 -2.39 -0.02 1.21 16 38 H 0.07 1.20 7.10 -2.39 -0.02 1.18 16 39 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.41 6.25 7.12 -92.71 -0.66 5.59 16 42 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 46 H 0.00 -0.09 8.14 -2.39 -0.02 -0.10 16 47 H 0.05 2.90 5.93 -2.39 -0.01 2.89 16 48 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 49 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 51 H 0.09 1.85 6.75 -2.39 -0.02 1.84 16 52 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -74.18 415.70 1.22 -72.96 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -1.64 Total: 18.46 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 6.01 Total: -2.50 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -5.13 Total: -118.03 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.05 Total: -17.65 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -74.18 1.22 -72.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752430488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.090 kcal (2) G-P(sol) polarization free energy of solvation -74.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds