Wall clock time and date at job start Wed Apr 1 2020 03:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.89994 * 2 1 4 4 N 1.40085 * 108.20475 * 180.25316 * 3 2 1 5 5 H 0.97006 * 126.03112 * 179.73463 * 4 3 2 6 6 C 1.34942 * 107.92675 * 359.72022 * 4 3 2 7 7 C 1.50700 * 126.12907 * 180.02562 * 6 4 3 8 8 C 1.35312 * 107.74478 * 359.97438 * 6 4 3 9 9 C 1.50705 * 126.03960 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.46688 * 90.00110 * 9 8 6 11 11 C 1.50708 * 109.47017 * 180.02562 * 10 9 8 12 12 O 1.21288 * 119.99612 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99976 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99551 * 179.97438 * 13 11 10 15 15 H 1.08995 * 115.55393 * 9.29881 * 14 13 11 16 16 C 1.53024 * 117.50234 * 223.60661 * 14 13 11 17 17 C 1.52826 * 117.49919 * 155.02461 * 14 13 11 18 18 C 1.53187 * 117.71311 * 359.86329 * 17 14 13 19 19 C 1.53340 * 108.76918 * 158.88950 * 18 17 14 20 20 N 1.46837 * 108.82004 * 51.30167 * 19 18 17 21 21 C 1.36947 * 120.38152 * 123.11751 * 20 19 18 22 22 H 1.07992 * 120.00144 * 331.80463 * 21 20 19 23 23 C 1.38808 * 119.99597 * 151.80342 * 21 20 19 24 24 N 1.31617 * 120.00008 * 159.30282 * 23 21 20 25 25 Si 1.86804 * 120.00134 * 339.30284 * 23 21 20 26 26 H 1.48496 * 109.47364 * 94.25045 * 25 23 21 27 27 H 1.48505 * 109.46895 * 214.24963 * 25 23 21 28 28 H 1.48500 * 109.47105 * 334.24529 * 25 23 21 29 29 C 1.46847 * 119.23540 * 303.10214 * 20 19 18 30 30 C 1.53181 * 117.71268 * 215.09905 * 17 14 13 31 31 H 1.08997 * 109.46912 * 270.21276 * 1 2 3 32 32 H 1.09003 * 109.46854 * 30.21318 * 1 2 3 33 33 H 1.08998 * 109.46693 * 150.21022 * 1 2 3 34 34 H 1.09000 * 109.46946 * 269.97839 * 7 6 4 35 35 H 1.09000 * 109.46811 * 29.97261 * 7 6 4 36 36 H 1.08989 * 109.47470 * 149.97301 * 7 6 4 37 37 H 1.08998 * 109.47045 * 330.00256 * 9 8 6 38 38 H 1.08992 * 109.47115 * 209.99517 * 9 8 6 39 39 H 1.08998 * 109.47268 * 299.99447 * 10 9 8 40 40 H 1.08998 * 109.47777 * 60.00190 * 10 9 8 41 41 H 0.96997 * 120.00363 * 359.97438 * 13 11 10 42 42 H 1.09007 * 117.50562 * 359.97438 * 16 14 13 43 43 H 1.08996 * 117.50680 * 145.01766 * 16 14 13 44 44 H 1.09002 * 109.58571 * 278.67388 * 18 17 14 45 45 H 1.08997 * 109.58849 * 39.09993 * 18 17 14 46 46 H 1.09004 * 109.58322 * 291.50114 * 19 18 17 47 47 H 1.09008 * 109.58120 * 171.10492 * 19 18 17 48 48 H 0.97006 * 119.99979 * 179.97438 * 24 23 21 49 49 H 1.08996 * 109.57806 * 297.10462 * 29 20 19 50 50 H 1.08995 * 109.58156 * 176.70077 * 29 20 19 51 51 H 1.08999 * 109.58948 * 320.90144 * 30 17 14 52 52 H 1.09002 * 109.58365 * 81.33369 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0059 5 1 4.3908 1.2080 -0.0108 6 6 3.6142 -0.7153 -0.0031 7 6 4.8350 -1.5989 -0.0069 8 6 2.3272 -1.1329 0.0048 9 6 1.8599 -2.5657 0.0098 10 6 1.7100 -3.0481 1.4540 11 6 1.2433 -4.4811 1.4591 12 8 1.0493 -5.0594 0.4107 13 7 1.0416 -5.1200 2.6285 14 6 0.5874 -6.5128 2.6333 15 1 0.5867 -7.0105 1.6636 16 6 -0.5157 -6.8930 3.6235 17 6 0.9203 -7.3594 3.8614 18 6 1.7060 -6.6924 4.9947 19 6 1.4787 -7.4865 6.2866 20 7 1.7532 -8.9051 6.0251 21 6 2.6877 -9.5779 6.7663 22 1 3.5201 -9.0434 7.1997 23 6 2.5651 -10.9468 6.9607 24 7 3.6178 -11.6603 7.2998 25 14 0.9059 -11.7765 6.7408 26 1 0.7961 -12.3051 5.3575 27 1 0.7795 -12.8949 7.7096 28 1 -0.1770 -10.7890 6.9808 29 6 1.0138 -9.5942 4.9598 30 6 1.2319 -8.8429 3.6408 31 1 -0.3633 0.0038 1.0276 32 1 -0.3633 0.8881 -0.5172 33 1 -0.3632 -0.8919 -0.5106 34 1 5.1243 -1.8144 -1.0355 35 1 5.6536 -1.0897 0.5017 36 1 4.6101 -2.5316 0.5102 37 1 2.5905 -3.1879 -0.5071 38 1 0.8983 -2.6360 -0.4984 39 1 2.6716 -2.9779 1.9623 40 1 0.9794 -2.4260 1.9710 41 1 1.1971 -4.6576 3.4669 42 1 -0.9032 -6.1069 4.2716 43 1 -1.2420 -7.6407 3.3052 44 1 2.7682 -6.6888 4.7500 45 1 1.3563 -5.6688 5.1286 46 1 0.4448 -7.3683 6.6110 47 1 2.1512 -7.1214 7.0630 48 1 3.5320 -12.6169 7.4359 49 1 -0.0489 -9.6064 5.2018 50 1 1.3802 -10.6161 4.8629 51 1 0.5676 -9.2461 2.8764 52 1 2.2685 -8.9552 3.3233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752430489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:50 Heat of formation + Delta-G solvation = 67.728261 kcal Electronic energy + Delta-G solvation = -30124.705279 eV Core-core repulsion = 26126.514079 eV Total energy + Delta-G solvation = -3998.191200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.71865 -40.06548 -38.62280 -35.78933 -34.43312 -33.70903 -33.15698 -31.76094 -30.72420 -30.48513 -28.74480 -28.22778 -27.41384 -24.55638 -24.21285 -23.03510 -21.89706 -21.02577 -20.50457 -20.33437 -19.54089 -18.40534 -17.72525 -17.14705 -16.52802 -16.15780 -15.72158 -15.50347 -15.12985 -14.39720 -14.30185 -14.20227 -13.97725 -13.84203 -13.69953 -13.68566 -13.23995 -13.06669 -12.91615 -12.84219 -12.74736 -12.66227 -12.33048 -12.26087 -12.17623 -12.10757 -11.89027 -11.69823 -11.32297 -11.16645 -10.79463 -10.73474 -10.61877 -10.30921 -10.02903 -9.94907 -9.79148 -9.57666 -9.51618 -9.44036 -8.74064 -8.67706 -8.44767 -6.94918 -5.95637 -3.31436 1.50478 2.33922 2.50984 2.54812 3.09662 3.31895 3.48386 3.51518 4.04594 4.26778 4.32822 4.52608 4.60432 4.64906 4.80771 4.82553 4.91290 4.94173 4.99175 5.00663 5.07146 5.12692 5.25435 5.30104 5.31022 5.33280 5.37728 5.42627 5.46220 5.61427 5.73710 5.76630 5.85009 5.91802 5.92583 5.99620 6.00814 6.04806 6.14929 6.31452 6.36057 6.37626 6.42682 6.51804 6.60577 6.69523 6.70212 6.94344 6.94976 7.36877 7.45919 7.97544 8.18186 8.32752 8.94926 9.72143 10.10287 11.20319 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.001935 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.431400 B =14464.571101 C =14991.998730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.085 3.915 3 N -0.298 5.298 4 N -0.478 5.478 5 H 0.437 0.563 6 C 0.093 3.907 7 C -0.097 4.097 8 C -0.235 4.235 9 C -0.022 4.022 10 C -0.134 4.134 11 C 0.514 3.486 12 O -0.543 6.543 13 N -0.698 5.698 14 C 0.075 3.925 15 H 0.133 0.867 16 C -0.185 4.185 17 C -0.102 4.102 18 C -0.097 4.097 19 C 0.153 3.847 20 N -0.604 5.604 21 C -0.261 4.261 22 H 0.084 0.916 23 C 0.023 3.977 24 N -0.908 5.908 25 Si 0.882 3.118 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.270 1.270 29 C 0.132 3.868 30 C -0.099 4.099 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.401 0.599 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.023 0.977 47 H 0.063 0.937 48 H 0.262 0.738 49 H 0.026 0.974 50 H 0.072 0.928 51 H 0.056 0.944 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 23.279 -14.368 27.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 N -0.122 5.122 4 N -0.186 5.186 5 H 0.281 0.719 6 C -0.036 4.036 7 C -0.155 4.155 8 C -0.246 4.246 9 C -0.061 4.061 10 C -0.174 4.174 11 C 0.301 3.699 12 O -0.420 6.420 13 N -0.348 5.348 14 C -0.031 4.031 15 H 0.150 0.850 16 C -0.223 4.223 17 C -0.104 4.104 18 C -0.137 4.137 19 C 0.027 3.973 20 N -0.327 5.327 21 C -0.389 4.389 22 H 0.102 0.898 23 C -0.176 4.176 24 N -0.551 5.551 25 Si 0.713 3.287 26 H -0.216 1.216 27 H -0.232 1.232 28 H -0.195 1.195 29 C 0.006 3.994 30 C -0.138 4.138 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.236 0.764 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.041 0.959 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.044 0.956 50 H 0.090 0.910 51 H 0.074 0.926 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.331 23.989 -15.055 28.517 hybrid contribution -0.365 -0.847 0.425 1.016 sum -3.696 23.141 -14.631 27.627 Atomic orbital electron populations 1.20225 0.86699 1.03488 1.03141 1.22260 0.96974 0.90214 0.98742 1.77292 0.86494 1.22378 1.26020 1.46157 1.07313 1.04873 1.60238 0.71922 1.20945 0.97057 0.84884 1.00671 1.20518 0.92737 0.98563 1.03714 1.19713 0.91116 0.96272 1.17467 1.19563 1.02544 0.89495 0.94530 1.21677 1.03251 0.92527 0.99985 1.20741 0.76889 0.88741 0.83503 1.90695 1.51472 1.68396 1.31465 1.45463 1.67937 1.12696 1.08693 1.21843 1.02009 0.82593 0.96635 0.84969 1.23555 0.92633 1.03400 1.02759 1.21912 0.96550 0.95874 0.96030 1.21608 0.99535 0.96827 0.95707 1.20859 0.98027 0.84676 0.93778 1.44274 1.45716 1.06697 1.36048 1.18919 1.01163 0.91258 1.27555 0.89825 1.25303 0.96988 0.96504 0.98812 1.69842 1.28057 1.06435 1.50755 0.86935 0.86720 0.78754 0.76289 1.21644 1.23199 1.19511 1.21286 0.94882 0.96152 0.87089 1.21685 1.01609 0.91548 0.98958 0.90386 0.90909 0.90128 0.89921 0.90959 0.89235 0.90585 0.90353 0.89055 0.88942 0.76405 0.88897 0.88412 0.91320 0.93202 0.95889 0.91808 0.92789 0.95582 0.90986 0.92563 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.26 36.01 0.37 -0.16 16 2 C 0.08 0.80 7.22 -82.40 -0.59 0.20 16 3 N -0.30 -3.10 12.70 33.67 0.43 -2.67 16 4 N -0.48 -3.76 7.36 33.47 0.25 -3.51 16 5 H 0.44 2.11 8.96 -182.60 -1.64 0.48 16 6 C 0.09 0.71 7.21 -82.27 -0.59 0.12 16 7 C -0.10 -0.48 10.04 36.01 0.36 -0.12 16 8 C -0.23 -2.05 5.35 -105.05 -0.56 -2.62 16 9 C -0.02 -0.19 4.41 -27.88 -0.12 -0.32 16 10 C -0.13 -1.07 5.68 -27.88 -0.16 -1.23 16 11 C 0.51 5.84 7.83 -10.98 -0.09 5.76 16 12 O -0.54 -8.21 15.55 5.55 0.09 -8.13 16 13 N -0.70 -7.64 5.35 -53.88 -0.29 -7.93 16 14 C 0.07 0.98 6.14 -68.00 -0.42 0.57 16 15 H 0.13 1.92 7.40 -51.93 -0.38 1.53 16 16 C -0.18 -2.37 9.86 -26.80 -0.26 -2.63 16 17 C -0.10 -1.52 1.94 -154.49 -0.30 -1.82 16 18 C -0.10 -1.46 5.37 -26.46 -0.14 -1.60 16 19 C 0.15 2.85 6.51 -3.68 -0.02 2.83 16 20 N -0.60 -13.96 2.71 -172.27 -0.47 -14.42 16 21 C -0.26 -7.16 10.00 -15.06 -0.15 -7.31 16 22 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 23 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 24 N -0.91 -27.63 13.97 55.49 0.78 -26.86 16 25 Si 0.88 22.22 24.40 -169.99 -4.15 18.07 16 26 H -0.29 -7.02 6.66 56.52 0.38 -6.65 16 27 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 28 H -0.27 -6.67 6.65 56.52 0.38 -6.30 16 29 C 0.13 2.81 4.23 -3.67 -0.02 2.79 16 30 C -0.10 -1.72 5.83 -26.46 -0.15 -1.87 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.49 7.25 -51.93 -0.38 0.11 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.09 0.45 7.78 -51.94 -0.40 0.05 16 37 H 0.08 0.69 7.73 -51.93 -0.40 0.29 16 38 H 0.08 0.72 7.20 -51.93 -0.37 0.34 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.40 3.56 7.12 -40.82 -0.29 3.27 16 42 H 0.09 1.09 8.14 -51.92 -0.42 0.66 16 43 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.59 6.75 -51.93 -0.35 0.23 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 1.18 7.92 -51.92 -0.41 0.77 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.03 0.55 7.27 -51.93 -0.38 0.17 16 50 H 0.07 1.70 4.31 -51.93 -0.22 1.48 16 51 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 52 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 409.27 15.07 6.17 6.17 Total: -1.00 -34.68 409.27 -10.05 -44.74 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -9.91 Total: 1.37 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -2.95 Total: -6.83 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.69 Total: -55.39 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.15 Total: 18.07 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.68 -10.05 -44.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752430489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.467 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds