Wall clock time and date at job start Wed Apr 1 2020 03:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 125.89994 * 2 1 4 4 N 1.40085 * 108.20475 * 180.25316 * 3 2 1 5 5 H 0.97006 * 126.03112 * 179.73463 * 4 3 2 6 6 C 1.34942 * 107.92675 * 359.72022 * 4 3 2 7 7 C 1.50700 * 126.12907 * 180.02562 * 6 4 3 8 8 C 1.35312 * 107.74478 * 359.97438 * 6 4 3 9 9 C 1.50705 * 126.03960 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.46688 * 90.00110 * 9 8 6 11 11 C 1.50708 * 109.47017 * 180.02562 * 10 9 8 12 12 O 1.21288 * 119.99612 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99976 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99551 * 179.97438 * 13 11 10 15 15 H 1.08995 * 115.55393 * 9.29881 * 14 13 11 16 16 C 1.53024 * 117.50234 * 223.60661 * 14 13 11 17 17 C 1.52826 * 117.49919 * 155.02461 * 14 13 11 18 18 C 1.53187 * 117.71311 * 359.86329 * 17 14 13 19 19 C 1.53340 * 108.76918 * 158.88950 * 18 17 14 20 20 N 1.46837 * 108.82004 * 51.30167 * 19 18 17 21 21 C 1.36947 * 120.38152 * 123.11751 * 20 19 18 22 22 H 1.07992 * 120.00144 * 331.80463 * 21 20 19 23 23 C 1.38808 * 119.99597 * 151.80342 * 21 20 19 24 24 N 1.31617 * 120.00008 * 159.30282 * 23 21 20 25 25 Si 1.86804 * 120.00134 * 339.30284 * 23 21 20 26 26 H 1.48496 * 109.47364 * 94.25045 * 25 23 21 27 27 H 1.48505 * 109.46895 * 214.24963 * 25 23 21 28 28 H 1.48500 * 109.47105 * 334.24529 * 25 23 21 29 29 C 1.46847 * 119.23540 * 303.10214 * 20 19 18 30 30 C 1.53181 * 117.71268 * 215.09905 * 17 14 13 31 31 H 1.08997 * 109.46912 * 270.21276 * 1 2 3 32 32 H 1.09003 * 109.46854 * 30.21318 * 1 2 3 33 33 H 1.08998 * 109.46693 * 150.21022 * 1 2 3 34 34 H 1.09000 * 109.46946 * 269.97839 * 7 6 4 35 35 H 1.09000 * 109.46811 * 29.97261 * 7 6 4 36 36 H 1.08989 * 109.47470 * 149.97301 * 7 6 4 37 37 H 1.08998 * 109.47045 * 330.00256 * 9 8 6 38 38 H 1.08992 * 109.47115 * 209.99517 * 9 8 6 39 39 H 1.08998 * 109.47268 * 299.99447 * 10 9 8 40 40 H 1.08998 * 109.47777 * 60.00190 * 10 9 8 41 41 H 0.96997 * 120.00363 * 359.97438 * 13 11 10 42 42 H 1.09007 * 117.50562 * 359.97438 * 16 14 13 43 43 H 1.08996 * 117.50680 * 145.01766 * 16 14 13 44 44 H 1.09002 * 109.58571 * 278.67388 * 18 17 14 45 45 H 1.08997 * 109.58849 * 39.09993 * 18 17 14 46 46 H 1.09004 * 109.58322 * 291.50114 * 19 18 17 47 47 H 1.09008 * 109.58120 * 171.10492 * 19 18 17 48 48 H 0.97006 * 119.99979 * 179.97438 * 24 23 21 49 49 H 1.08996 * 109.57806 * 297.10462 * 29 20 19 50 50 H 1.08995 * 109.58156 * 176.70077 * 29 20 19 51 51 H 1.08999 * 109.58948 * 320.90144 * 30 17 14 52 52 H 1.09002 * 109.58365 * 81.33369 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0059 5 1 4.3908 1.2080 -0.0108 6 6 3.6142 -0.7153 -0.0031 7 6 4.8350 -1.5989 -0.0069 8 6 2.3272 -1.1329 0.0048 9 6 1.8599 -2.5657 0.0098 10 6 1.7100 -3.0481 1.4540 11 6 1.2433 -4.4811 1.4591 12 8 1.0493 -5.0594 0.4107 13 7 1.0416 -5.1200 2.6285 14 6 0.5874 -6.5128 2.6333 15 1 0.5867 -7.0105 1.6636 16 6 -0.5157 -6.8930 3.6235 17 6 0.9203 -7.3594 3.8614 18 6 1.7060 -6.6924 4.9947 19 6 1.4787 -7.4865 6.2866 20 7 1.7532 -8.9051 6.0251 21 6 2.6877 -9.5779 6.7663 22 1 3.5201 -9.0434 7.1997 23 6 2.5651 -10.9468 6.9607 24 7 3.6178 -11.6603 7.2998 25 14 0.9059 -11.7765 6.7408 26 1 0.7961 -12.3051 5.3575 27 1 0.7795 -12.8949 7.7096 28 1 -0.1770 -10.7890 6.9808 29 6 1.0138 -9.5942 4.9598 30 6 1.2319 -8.8429 3.6408 31 1 -0.3633 0.0038 1.0276 32 1 -0.3633 0.8881 -0.5172 33 1 -0.3632 -0.8919 -0.5106 34 1 5.1243 -1.8144 -1.0355 35 1 5.6536 -1.0897 0.5017 36 1 4.6101 -2.5316 0.5102 37 1 2.5905 -3.1879 -0.5071 38 1 0.8983 -2.6360 -0.4984 39 1 2.6716 -2.9779 1.9623 40 1 0.9794 -2.4260 1.9710 41 1 1.1971 -4.6576 3.4669 42 1 -0.9032 -6.1069 4.2716 43 1 -1.2420 -7.6407 3.3052 44 1 2.7682 -6.6888 4.7500 45 1 1.3563 -5.6688 5.1286 46 1 0.4448 -7.3683 6.6110 47 1 2.1512 -7.1214 7.0630 48 1 3.5320 -12.6169 7.4359 49 1 -0.0489 -9.6064 5.2018 50 1 1.3802 -10.6161 4.8629 51 1 0.5676 -9.2461 2.8764 52 1 2.2685 -8.9552 3.3233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752430489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:49 Heat of formation + Delta-G solvation = 44.526026 kcal Electronic energy + Delta-G solvation = -30125.711404 eV Core-core repulsion = 26126.514079 eV Total energy + Delta-G solvation = -3999.197325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.32392 -41.08915 -39.79642 -37.29620 -35.12031 -34.46226 -34.25883 -33.51977 -32.01727 -31.31181 -30.20151 -28.83274 -27.98500 -26.03095 -25.27212 -24.50041 -23.07892 -22.40662 -21.30403 -21.05658 -20.15850 -19.85145 -18.56125 -18.30232 -17.78427 -17.43936 -16.84434 -16.47492 -16.08884 -15.93898 -15.48767 -15.31413 -15.03111 -14.94175 -14.55869 -14.48124 -14.30905 -14.13016 -14.08194 -13.80987 -13.67953 -13.55256 -13.42135 -13.26054 -13.18841 -12.90728 -12.86388 -12.69574 -12.55362 -12.37445 -12.22987 -12.10067 -11.93475 -11.60489 -11.44587 -11.36547 -11.29749 -10.91776 -10.74684 -10.58062 -10.18509 -9.60588 -9.29445 -8.83556 -8.15127 -5.45921 0.91022 1.31148 1.42103 1.51494 1.67041 1.70241 1.99145 2.23364 2.43198 2.96183 3.08917 3.38774 3.70114 3.76934 3.78630 3.85468 3.90256 3.97185 4.06214 4.15644 4.22904 4.32648 4.40393 4.51972 4.53649 4.59168 4.68190 4.72605 4.72877 4.79014 4.79355 4.82039 4.83982 4.93324 4.96662 5.02005 5.04873 5.05814 5.14816 5.14996 5.22446 5.23799 5.28324 5.33991 5.38448 5.54596 5.60741 5.78599 5.90453 6.15214 6.45640 6.62556 6.76292 6.96310 7.33591 7.66628 8.07005 9.04823 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.001935 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.431400 B =14464.571101 C =14991.998730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.074 3.926 3 N -0.334 5.334 4 N -0.475 5.475 5 H 0.448 0.552 6 C 0.098 3.902 7 C -0.096 4.096 8 C -0.251 4.251 9 C -0.015 4.015 10 C -0.123 4.123 11 C 0.515 3.485 12 O -0.584 6.584 13 N -0.690 5.690 14 C 0.087 3.913 15 H 0.118 0.882 16 C -0.166 4.166 17 C -0.121 4.121 18 C -0.084 4.084 19 C 0.146 3.854 20 N -0.619 5.619 21 C -0.246 4.246 22 H 0.051 0.949 23 C -0.038 4.038 24 N -0.958 5.958 25 Si 0.947 3.053 26 H -0.278 1.278 27 H -0.313 1.313 28 H -0.258 1.258 29 C 0.128 3.872 30 C -0.092 4.092 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.414 0.586 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.039 0.961 47 H 0.056 0.944 48 H 0.260 0.740 49 H 0.037 0.963 50 H 0.044 0.956 51 H 0.077 0.923 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.062 25.344 -15.055 29.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 N -0.158 5.158 4 N -0.184 5.184 5 H 0.294 0.706 6 C -0.032 4.032 7 C -0.154 4.154 8 C -0.262 4.262 9 C -0.054 4.054 10 C -0.163 4.163 11 C 0.304 3.696 12 O -0.464 6.464 13 N -0.341 5.341 14 C -0.020 4.020 15 H 0.136 0.864 16 C -0.205 4.205 17 C -0.123 4.123 18 C -0.123 4.123 19 C 0.021 3.979 20 N -0.343 5.343 21 C -0.375 4.375 22 H 0.069 0.931 23 C -0.233 4.233 24 N -0.604 5.604 25 Si 0.776 3.224 26 H -0.205 1.205 27 H -0.242 1.242 28 H -0.182 1.182 29 C 0.003 3.997 30 C -0.132 4.132 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.251 0.749 42 H 0.131 0.869 43 H 0.122 0.878 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.062 0.938 51 H 0.096 0.904 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.116 26.125 -15.745 30.929 hybrid contribution 0.270 -1.395 0.602 1.543 sum -4.846 24.730 -15.144 29.401 Atomic orbital electron populations 1.20304 0.85444 1.03829 1.03969 1.22665 0.98037 0.90225 0.98251 1.77236 0.87618 1.23380 1.27571 1.46204 1.07136 1.05267 1.59792 0.70637 1.21355 0.97719 0.84989 0.99113 1.20614 0.92144 0.98192 1.04484 1.19783 0.91589 0.96087 1.18731 1.19439 1.01780 0.89337 0.94827 1.21659 1.04501 0.90209 0.99945 1.21298 0.75832 0.89719 0.82787 1.90687 1.53230 1.69522 1.32921 1.45399 1.67520 1.11785 1.09375 1.21600 1.01829 0.83271 0.95308 0.86402 1.23649 0.91390 1.03501 1.01928 1.21758 0.98831 0.94370 0.97311 1.21444 0.98969 0.98350 0.93566 1.21079 0.98568 0.82466 0.95783 1.44427 1.45258 1.08381 1.36281 1.18879 1.00895 0.91284 1.26489 0.93114 1.25940 1.00031 0.97415 0.99901 1.69975 1.30105 1.06601 1.53763 0.85886 0.82625 0.77524 0.76353 1.20483 1.24207 1.18245 1.21300 0.94734 0.95206 0.88501 1.21526 1.01012 0.93474 0.97140 0.89237 0.90827 0.89521 0.89169 0.89168 0.89125 0.91476 0.91271 0.87335 0.87003 0.74873 0.86875 0.87824 0.92880 0.89040 0.94345 0.92575 0.93083 0.94520 0.93790 0.90435 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.26 71.24 0.73 -0.21 16 2 C 0.07 1.30 7.22 43.10 0.31 1.62 16 3 N -0.33 -6.61 12.70 -47.38 -0.60 -7.22 16 4 N -0.47 -6.80 7.36 -48.01 -0.35 -7.15 16 5 H 0.45 3.72 8.96 -213.32 -1.91 1.80 16 6 C 0.10 1.32 7.21 41.41 0.30 1.62 16 7 C -0.10 -0.73 10.04 71.24 0.71 -0.02 16 8 C -0.25 -3.98 5.35 -20.14 -0.11 -4.09 16 9 C -0.01 -0.23 4.41 29.85 0.13 -0.10 16 10 C -0.12 -1.60 5.68 29.85 0.17 -1.43 16 11 C 0.51 10.36 7.83 87.66 0.69 11.04 16 12 O -0.58 -16.78 15.55 -3.05 -0.05 -16.83 16 13 N -0.69 -12.68 5.35 -442.75 -2.37 -15.05 16 14 C 0.09 2.00 6.14 44.94 0.28 2.27 16 15 H 0.12 3.17 7.40 -2.39 -0.02 3.15 16 16 C -0.17 -3.54 9.86 30.55 0.30 -3.24 16 17 C -0.12 -3.24 1.94 -52.17 -0.10 -3.34 16 18 C -0.08 -2.28 5.37 30.77 0.17 -2.11 16 19 C 0.15 5.15 6.51 86.43 0.56 5.72 16 20 N -0.62 -28.24 2.71 -698.92 -1.89 -30.13 16 21 C -0.25 -13.79 10.00 84.03 0.84 -12.95 16 22 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 23 C -0.04 -2.24 5.23 84.86 0.44 -1.80 16 24 N -0.96 -60.41 13.97 21.65 0.30 -60.11 16 25 Si 0.95 46.58 24.40 68.60 1.67 48.25 16 26 H -0.28 -13.02 6.66 99.48 0.66 -12.35 16 27 H -0.31 -15.71 7.11 99.48 0.71 -15.01 16 28 H -0.26 -12.02 6.65 99.48 0.66 -11.36 16 29 C 0.13 5.27 4.23 86.43 0.37 5.64 16 30 C -0.09 -3.07 5.83 30.77 0.18 -2.89 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 0.93 7.25 -2.39 -0.02 0.91 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.09 0.70 7.78 -2.39 -0.02 0.68 16 37 H 0.07 1.15 7.73 -2.39 -0.02 1.13 16 38 H 0.07 1.19 7.20 -2.39 -0.02 1.17 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.41 5.46 7.12 -92.71 -0.66 4.80 16 42 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.09 1.71 6.75 -2.39 -0.02 1.70 16 46 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.06 2.03 7.92 -2.38 -0.02 2.02 16 48 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 49 H 0.04 1.45 7.27 -2.39 -0.02 1.43 16 50 H 0.04 2.06 4.31 -2.39 -0.01 2.05 16 51 H 0.08 2.22 8.10 -2.39 -0.02 2.20 16 52 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -77.69 409.27 0.96 -76.73 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -1.72 Total: 15.78 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 5.97 Total: -4.27 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -4.91 Total: -119.66 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.05 Total: -16.83 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.67 Total: 48.25 kcal Total: -77.69 0.96 -76.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752430489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.255 kcal (2) G-P(sol) polarization free energy of solvation -77.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds