Wall clock time and date at job start Wed Apr 1 2020 04:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35038 * 126.38382 * 2 1 4 4 H 0.97003 * 124.88241 * 0.02562 * 3 2 1 5 5 N 1.28464 * 110.22811 * 180.02562 * 3 2 1 6 6 C 1.31807 * 110.07880 * 0.02562 * 5 3 2 7 7 C 1.47700 * 126.52045 * 180.02562 * 6 5 3 8 8 O 1.21575 * 120.00207 * 186.13721 * 7 6 5 9 9 N 1.34782 * 120.00233 * 6.13425 * 7 6 5 10 10 C 1.46922 * 120.62717 * 354.70746 * 9 7 6 11 11 C 1.53193 * 108.77444 * 126.66685 * 10 9 7 12 12 C 1.53039 * 109.31479 * 54.63091 * 11 10 9 13 13 C 1.53040 * 109.53817 * 298.63801 * 12 11 10 14 14 H 1.08995 * 109.49485 * 301.40780 * 13 12 11 15 15 C 1.52998 * 109.52175 * 181.32949 * 13 12 11 16 16 H 1.09002 * 110.88974 * 300.84580 * 15 13 12 17 17 C 1.55159 * 111.00398 * 176.96306 * 15 13 12 18 18 C 1.54365 * 102.91834 * 206.45262 * 17 15 13 19 19 N 1.47019 * 107.29271 * 22.14382 * 18 17 15 20 20 C 1.36933 * 125.65078 * 181.05591 * 19 18 17 21 21 H 1.08001 * 120.00507 * 185.09949 * 20 19 18 22 22 C 1.38814 * 119.99966 * 5.09737 * 20 19 18 23 23 N 1.31619 * 120.00183 * 5.16533 * 22 20 19 24 24 Si 1.86806 * 119.99984 * 185.16858 * 22 20 19 25 25 H 1.48495 * 109.47205 * 84.99893 * 24 22 20 26 26 H 1.48495 * 109.47062 * 204.99991 * 24 22 20 27 27 H 1.48495 * 109.47082 * 324.99895 * 24 22 20 28 28 C 1.47423 * 108.70159 * 1.08528 * 19 18 17 29 29 C 1.46923 * 120.63128 * 174.98724 * 9 7 6 30 30 C 1.35363 * 126.38495 * 180.33232 * 2 1 3 31 31 C 1.50694 * 127.25464 * 359.97438 * 30 2 1 32 32 H 1.08994 * 109.47305 * 89.97588 * 1 2 3 33 33 H 1.09002 * 109.46583 * 209.97189 * 1 2 3 34 34 H 1.09005 * 109.47016 * 329.96580 * 1 2 3 35 35 H 1.09001 * 109.58670 * 246.45114 * 10 9 7 36 36 H 1.09002 * 109.58945 * 6.87786 * 10 9 7 37 37 H 1.09006 * 109.49523 * 294.68286 * 11 10 9 38 38 H 1.08998 * 109.49726 * 174.59238 * 11 10 9 39 39 H 1.08998 * 109.45847 * 178.61354 * 12 11 10 40 40 H 1.09007 * 109.44421 * 58.65149 * 12 11 10 41 41 H 1.08999 * 110.71645 * 324.78874 * 17 15 13 42 42 H 1.08999 * 110.71534 * 88.06283 * 17 15 13 43 43 H 1.09006 * 109.85122 * 262.72954 * 18 17 15 44 44 H 1.09007 * 110.02580 * 141.64743 * 18 17 15 45 45 H 0.96998 * 119.99922 * 179.97438 * 23 22 20 46 46 H 1.09003 * 110.36833 * 217.03330 * 28 19 18 47 47 H 1.09002 * 110.36382 * 94.71203 * 28 19 18 48 48 H 1.09001 * 109.58919 * 353.11830 * 29 9 7 49 49 H 1.09001 * 109.58701 * 113.54841 * 29 9 7 50 50 H 1.09002 * 109.47130 * 270.19496 * 31 30 2 51 51 H 1.09007 * 109.46889 * 30.18722 * 31 30 2 52 52 H 1.08996 * 109.47431 * 150.18500 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9965 2.0058 0.0004 5 7 3.5420 0.7297 -0.0005 6 6 3.6322 -0.5853 -0.0015 7 6 4.8765 -1.3810 -0.0018 8 8 4.8247 -2.5903 -0.1152 9 7 6.0695 -0.7664 0.1236 10 6 6.1574 0.7000 0.1453 11 6 6.9307 1.1291 1.3962 12 6 8.2854 0.4177 1.4227 13 6 8.0675 -1.0959 1.4851 14 1 7.4874 -1.3436 2.3740 15 6 9.4218 -1.8053 1.5450 16 1 10.0269 -1.5621 0.6717 17 6 9.2400 -3.3398 1.6859 18 6 10.5397 -3.7777 2.3942 19 7 11.0827 -2.5963 3.0806 20 6 12.2414 -2.5591 3.8094 21 1 12.5139 -1.6617 4.3450 22 6 13.0657 -3.6748 3.8599 23 7 12.7874 -4.7324 3.1276 24 14 14.5701 -3.6752 4.9675 25 1 14.1743 -4.0819 6.3397 26 1 15.5744 -4.6323 4.4378 27 1 15.1573 -2.3119 5.0052 28 6 10.1727 -1.4586 2.8549 29 6 7.3072 -1.5502 0.2351 30 6 2.3100 -1.0897 -0.0063 31 6 1.8856 -2.5356 -0.0142 32 1 -0.3633 0.0004 -1.0276 33 1 -0.3632 -0.8903 0.5134 34 1 -0.3633 0.8897 0.5144 35 1 6.6811 1.0478 -0.7452 36 1 5.1544 1.1259 0.1717 37 1 6.3612 0.8604 2.2859 38 1 7.0864 2.2077 1.3754 39 1 8.8477 0.7400 2.2991 40 1 8.8441 0.6673 0.5207 41 1 8.3697 -3.5701 2.3003 42 1 9.1570 -3.8097 0.7059 43 1 11.2574 -4.1417 1.6590 44 1 10.3233 -4.5613 3.1204 45 1 13.3637 -5.5119 3.1626 46 1 10.7411 -0.5365 2.7337 47 1 9.4692 -1.3657 3.6822 48 1 7.0629 -2.6090 0.3209 49 1 7.9246 -1.3858 -0.6480 50 1 1.7802 -2.8890 1.0116 51 1 0.9306 -2.6311 -0.5311 52 1 2.6385 -3.1326 -0.5287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961126607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:21 Heat of formation + Delta-G solvation = 60.898206 kcal Electronic energy + Delta-G solvation = -31109.879881 eV Core-core repulsion = 27111.392507 eV Total energy + Delta-G solvation = -3998.487374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.09455 -40.01652 -38.13505 -36.59304 -34.04459 -33.52699 -32.69745 -32.17177 -30.98091 -28.97509 -28.70052 -27.19362 -26.54465 -25.68001 -24.60722 -23.27742 -22.66232 -20.73678 -20.33728 -19.77402 -19.39307 -18.93423 -18.06194 -16.81958 -16.62325 -16.33420 -15.81554 -15.21455 -14.71668 -14.50099 -14.47626 -14.14722 -13.95645 -13.76733 -13.46394 -13.39301 -13.32451 -13.09445 -12.97735 -12.82688 -12.66953 -12.33584 -12.21610 -12.06396 -11.79767 -11.69810 -11.31639 -11.04527 -10.90310 -10.80088 -10.71743 -10.51141 -10.26119 -10.03585 -9.99790 -9.79313 -9.68353 -9.63361 -9.58152 -9.46392 -9.00016 -8.53170 -8.52284 -6.71829 -5.61034 -2.96373 1.29648 1.75915 2.42360 3.00145 3.29918 3.45182 3.49574 3.51588 4.09195 4.26871 4.50787 4.56925 4.75440 4.90542 4.96336 4.99266 5.00648 5.05149 5.12927 5.33055 5.34039 5.41702 5.50531 5.55553 5.61493 5.61946 5.67173 5.69711 5.81738 5.83153 5.89279 5.91449 5.96884 6.05025 6.10885 6.15736 6.19832 6.31926 6.40275 6.43897 6.53104 6.57130 6.67787 6.72988 6.77846 6.87855 7.10557 7.36278 7.60290 7.62576 7.76691 7.94315 8.16091 8.37428 9.31056 9.92292 10.59803 11.48736 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025016 B = 0.002141 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.023262 B =13073.142938 C =13720.078490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.011 3.989 3 N -0.385 5.385 4 H 0.443 0.557 5 N -0.260 5.260 6 C 0.002 3.998 7 C 0.599 3.401 8 O -0.530 6.530 9 N -0.596 5.596 10 C 0.072 3.928 11 C -0.130 4.130 12 C -0.117 4.117 13 C -0.085 4.085 14 H 0.072 0.928 15 C -0.094 4.094 16 H 0.074 0.926 17 C -0.139 4.139 18 C 0.173 3.827 19 N -0.606 5.606 20 C -0.226 4.226 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.145 3.855 29 C 0.118 3.882 30 C -0.143 4.143 31 C -0.081 4.081 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.136 0.864 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.251 0.749 46 H 0.036 0.964 47 H 0.016 0.984 48 H 0.095 0.905 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.061 0.939 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.795 14.280 -9.216 31.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 N -0.098 5.098 4 H 0.287 0.713 5 N -0.094 5.094 6 C -0.159 4.159 7 C 0.385 3.615 8 O -0.405 6.405 9 N -0.327 5.327 10 C -0.051 4.051 11 C -0.169 4.169 12 C -0.154 4.154 13 C -0.105 4.105 14 H 0.091 0.909 15 C -0.114 4.114 16 H 0.092 0.908 17 C -0.178 4.178 18 C 0.048 3.952 19 N -0.332 5.332 20 C -0.354 4.354 21 H 0.094 0.906 22 C -0.207 4.207 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.019 3.981 29 C -0.004 4.004 30 C -0.153 4.153 31 C -0.139 4.139 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.152 0.848 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.046 0.954 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.033 0.967 48 H 0.114 0.886 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.080 0.920 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.967 14.390 -9.237 31.091 hybrid contribution 0.375 -0.004 0.672 0.770 sum -25.592 14.386 -8.565 30.582 Atomic orbital electron populations 1.20352 0.86546 1.03999 1.03337 1.21216 0.95201 0.86887 1.08198 1.43403 1.03223 1.09448 1.53731 0.71263 1.73112 1.00751 1.14697 1.20883 1.21911 0.94987 0.89469 1.09508 1.16991 0.81446 0.86254 0.76857 1.90773 1.86168 1.13171 1.50407 1.47967 1.06024 1.07698 1.71058 1.22731 1.05275 0.79290 0.97816 1.21883 0.96829 1.00020 0.98136 1.21618 0.96440 0.94796 1.02576 1.21457 0.96391 0.94958 0.97707 0.90927 1.22311 0.93910 0.95650 0.99545 0.90759 1.22915 1.00066 0.94681 1.00108 1.21194 0.90010 0.88972 0.95002 1.44493 1.23206 1.05252 1.60285 1.19037 0.96038 0.98771 1.21603 0.90624 1.24820 0.98983 0.96715 1.00166 1.69969 1.39270 1.05231 1.42339 0.86152 0.82425 0.77121 0.80161 1.21660 1.21745 1.20803 1.21529 0.91954 0.91649 0.93013 1.21775 0.83620 0.97028 0.97972 1.20116 0.90534 0.96767 1.07913 1.20220 1.01507 0.89693 1.02492 0.90292 0.89454 0.91081 0.91969 0.84778 0.91889 0.91111 0.91191 0.91878 0.92652 0.92255 0.92413 0.95358 0.93843 0.94614 0.96660 0.88628 0.91422 0.91400 0.91987 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.14 36.01 0.37 0.08 16 2 C 0.01 0.08 7.23 -82.20 -0.59 -0.52 16 3 N -0.39 -2.61 6.83 33.50 0.23 -2.38 16 4 H 0.44 1.27 8.96 -190.44 -1.71 -0.44 16 5 N -0.26 -2.60 8.56 33.42 0.29 -2.31 16 6 C 0.00 0.02 6.90 -82.77 -0.57 -0.55 16 7 C 0.60 8.83 7.70 -12.39 -0.10 8.73 16 8 O -0.53 -9.14 14.52 5.30 0.08 -9.06 16 9 N -0.60 -8.05 2.97 -173.93 -0.52 -8.57 16 10 C 0.07 0.80 6.33 -3.71 -0.02 0.78 16 11 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 12 C -0.12 -1.47 5.02 -26.69 -0.13 -1.60 16 13 C -0.09 -1.26 1.84 -90.50 -0.17 -1.42 16 14 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 15 C -0.09 -1.68 2.56 -88.47 -0.23 -1.91 16 16 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 17 C -0.14 -2.76 5.55 -24.87 -0.14 -2.90 16 18 C 0.17 4.41 5.43 -3.04 -0.02 4.39 16 19 N -0.61 -16.15 3.39 -170.04 -0.58 -16.72 16 20 C -0.23 -6.52 10.27 -15.06 -0.15 -6.68 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.31 5.46 -17.43 -0.10 -0.41 16 23 N -0.92 -27.97 10.40 55.49 0.58 -27.39 16 24 Si 0.91 22.74 29.56 -169.99 -5.02 17.71 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.14 3.09 5.81 -2.53 -0.01 3.07 16 29 C 0.12 1.69 5.42 -3.71 -0.02 1.67 16 30 C -0.14 -1.50 6.25 -104.40 -0.65 -2.15 16 31 C -0.08 -0.77 9.67 36.00 0.35 -0.42 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.09 0.27 7.99 -51.93 -0.41 -0.14 16 34 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.14 1.41 3.70 -117.94 -0.44 0.98 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.92 7.33 -51.93 -0.38 0.54 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.63 6.97 -51.93 -0.36 1.27 16 44 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 45 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.04 0.74 8.03 -51.93 -0.42 0.33 16 47 H 0.02 0.33 8.03 -51.93 -0.42 -0.08 16 48 H 0.10 1.53 6.50 -51.93 -0.34 1.19 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.06 0.42 8.00 -51.93 -0.42 0.01 16 52 H 0.09 1.01 6.62 -51.93 -0.34 0.67 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -35.07 398.95 -11.54 -46.62 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -10.25 Total: -2.49 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.35 Total: -1.41 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.00 Total: -57.38 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.07 -11.54 -46.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961126607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.514 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds