Wall clock time and date at job start Wed Apr 1 2020 05:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39677 * 127.32074 * 2 1 4 4 N 1.30865 * 107.85850 * 180.23493 * 3 2 1 5 5 N 1.28437 * 110.92894 * 359.77769 * 4 3 2 6 6 C 1.46509 * 125.18941 * 179.97438 * 5 4 3 7 7 C 1.36600 * 109.62222 * 359.97438 * 5 4 3 8 8 C 1.47162 * 126.88298 * 179.97438 * 7 5 4 9 9 O 1.21631 * 119.99915 * 260.71692 * 8 7 5 10 10 N 1.34779 * 119.99877 * 80.72223 * 8 7 5 11 11 C 1.46921 * 120.63314 * 4.57639 * 10 8 7 12 12 C 1.53194 * 108.76641 * 126.36443 * 11 10 8 13 13 C 1.53035 * 109.31149 * 54.65530 * 12 11 10 14 14 C 1.53043 * 109.52892 * 298.61792 * 13 12 11 15 15 H 1.09007 * 109.49324 * 301.41560 * 14 13 12 16 16 C 1.53000 * 109.50049 * 181.35978 * 14 13 12 17 17 H 1.08998 * 109.87424 * 62.79819 * 16 14 13 18 18 C 1.54328 * 109.87892 * 301.62330 * 16 14 13 19 19 C 1.55152 * 102.94309 * 218.38786 * 18 16 14 20 20 C 1.54916 * 101.58071 * 35.50306 * 19 18 16 21 21 N 1.47015 * 109.88359 * 183.81970 * 16 14 13 22 22 C 1.36940 * 125.64557 * 298.38841 * 21 16 14 23 23 H 1.07997 * 120.00181 * 0.34554 * 22 21 16 24 24 C 1.38816 * 119.99754 * 180.34654 * 22 21 16 25 25 N 1.31619 * 120.00260 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99843 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47498 * 59.99687 * 26 24 22 28 28 H 1.48500 * 109.47284 * 179.97438 * 26 24 22 29 29 H 1.48509 * 109.47199 * 299.99866 * 26 24 22 30 30 C 1.46933 * 120.62716 * 184.55662 * 10 8 7 31 31 H 1.08998 * 109.47053 * 270.14166 * 1 2 3 32 32 H 1.09002 * 109.47092 * 30.14428 * 1 2 3 33 33 H 1.08995 * 109.47095 * 150.14055 * 1 2 3 34 34 H 1.07998 * 126.06513 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.46704 * 274.93249 * 6 5 4 36 36 H 1.09000 * 109.46733 * 34.93082 * 6 5 4 37 37 H 1.08997 * 109.47030 * 154.93387 * 6 5 4 38 38 H 1.09003 * 109.58664 * 246.16400 * 11 10 8 39 39 H 1.09001 * 109.58842 * 6.58434 * 11 10 8 40 40 H 1.08994 * 109.50864 * 294.69640 * 12 11 10 41 41 H 1.08997 * 109.48727 * 174.59897 * 12 11 10 42 42 H 1.08998 * 109.46229 * 178.59989 * 13 12 11 43 43 H 1.09005 * 109.46043 * 58.62987 * 13 12 11 44 44 H 1.08997 * 110.72218 * 336.75839 * 18 16 14 45 45 H 1.09006 * 110.71996 * 100.02368 * 18 16 14 46 46 H 1.08994 * 111.00867 * 277.42823 * 19 18 16 47 47 H 1.08999 * 111.03494 * 153.58814 * 19 18 16 48 48 H 1.08994 * 110.36639 * 204.14936 * 20 19 18 49 49 H 1.09001 * 110.36291 * 81.82607 * 20 19 18 50 50 H 0.96997 * 120.00171 * 180.02562 * 25 24 22 51 51 H 1.09004 * 109.58374 * 113.83910 * 30 10 8 52 52 H 1.08993 * 109.70286 * 353.48378 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1108 0.0000 4 7 3.5877 0.6748 -0.0051 5 7 3.6206 -0.6092 -0.0038 6 6 4.8391 -1.4225 -0.0089 7 6 2.3461 -1.1007 0.0032 8 6 1.9456 -2.5168 0.0064 9 8 1.6112 -3.0565 -1.0311 10 7 1.9492 -3.2155 1.1589 11 6 2.2535 -2.5536 2.4347 12 6 1.1186 -2.8419 3.4225 13 6 0.9155 -4.3548 3.5324 14 6 0.5207 -4.9185 2.1655 15 1 -0.3929 -4.4332 1.8219 16 6 0.2848 -6.4256 2.2834 17 1 -0.5481 -6.6186 2.9595 18 6 1.5612 -7.1172 2.8069 19 6 1.5990 -8.4382 1.9941 20 6 1.0386 -7.9774 0.6254 21 7 -0.0058 -6.9915 0.9579 22 6 -1.0700 -6.6575 0.1635 23 1 -1.7803 -5.9152 0.4962 24 6 -1.2357 -7.2731 -1.0696 25 7 -0.3703 -8.1781 -1.4750 26 14 -2.6869 -6.8170 -2.1537 27 1 -2.6252 -5.3697 -2.4807 28 1 -2.6362 -7.6100 -3.4082 29 1 -3.9531 -7.1083 -1.4343 30 6 1.6485 -4.6537 1.1632 31 1 -0.3633 0.0025 1.0276 32 1 -0.3633 0.8887 -0.5161 33 1 -0.3633 -0.8912 -0.5116 34 1 2.0450 2.1457 -0.0004 35 1 5.1852 -1.5519 -1.0343 36 1 5.6120 -0.9228 0.5751 37 1 4.6267 -2.3980 0.4287 38 1 3.1917 -2.9405 2.8325 39 1 2.3368 -1.4781 2.2777 40 1 0.1995 -2.3763 3.0670 41 1 1.3769 -2.4375 4.4012 42 1 0.1252 -4.5637 4.2534 43 1 1.8425 -4.8225 3.8641 44 1 2.4421 -6.5103 2.5978 45 1 1.4781 -7.3233 3.8741 46 1 0.9556 -9.1934 2.4455 47 1 2.6199 -8.8070 1.8941 48 1 0.6062 -8.8218 0.0888 49 1 1.8246 -7.5114 0.0311 50 1 -0.4859 -8.6080 -2.3368 51 1 2.5373 -5.2120 1.4573 52 1 1.3335 -4.9663 0.1677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963345712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:16 Heat of formation + Delta-G solvation = 71.801731 kcal Electronic energy + Delta-G solvation = -32902.503215 eV Core-core repulsion = 28904.488654 eV Total energy + Delta-G solvation = -3998.014561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 18.93 seconds Orbital eigenvalues (eV) -42.60380 -39.94495 -38.17693 -36.43470 -34.07724 -33.16635 -32.32125 -31.80962 -31.02944 -29.26427 -28.57753 -26.76974 -26.22429 -25.39686 -24.52119 -22.82439 -22.27112 -21.02467 -20.94279 -19.97772 -19.03018 -18.38608 -17.64278 -16.68355 -16.54528 -15.82768 -15.71414 -15.05833 -14.84639 -14.57512 -14.28024 -14.15457 -13.80016 -13.62351 -13.47054 -13.45083 -13.15543 -13.13818 -12.83586 -12.58428 -12.52936 -12.18654 -12.12027 -11.97507 -11.72758 -11.54275 -11.33162 -11.00318 -10.88203 -10.76976 -10.69463 -10.64581 -10.20758 -10.05805 -9.95022 -9.84352 -9.79518 -9.55967 -9.42222 -9.18375 -8.68901 -8.57083 -8.41196 -6.78599 -5.58000 -2.99929 1.62741 2.13429 2.59316 2.78030 3.18720 3.46991 3.51978 3.53443 4.30751 4.41519 4.55355 4.79721 4.87998 4.93068 4.97059 5.04052 5.11022 5.15653 5.28331 5.32378 5.35189 5.47676 5.56357 5.58180 5.62043 5.65580 5.69181 5.70588 5.81736 5.90126 5.91808 5.95697 6.03787 6.10391 6.13908 6.18402 6.32758 6.36093 6.49359 6.50566 6.59513 6.63812 6.69393 6.77664 6.81087 6.94684 7.06111 7.50016 7.57108 7.70367 7.92506 7.98254 8.22830 8.43319 9.29011 9.90626 10.53766 11.45100 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.004093 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.339168 B = 6839.145663 C = 7983.753022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.161 4.161 3 C 0.004 3.996 4 N -0.289 5.289 5 N -0.276 5.276 6 C 0.088 3.912 7 C -0.018 4.018 8 C 0.583 3.417 9 O -0.505 6.505 10 N -0.599 5.599 11 C 0.109 3.891 12 C -0.131 4.131 13 C -0.115 4.115 14 C -0.107 4.107 15 H 0.070 0.930 16 C 0.169 3.831 17 H 0.036 0.964 18 C -0.128 4.128 19 C -0.148 4.148 20 C 0.151 3.849 21 N -0.594 5.594 22 C -0.219 4.219 23 H 0.074 0.926 24 C -0.005 4.005 25 N -0.920 5.920 26 Si 0.908 3.092 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.125 3.875 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.184 0.816 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.106 0.894 49 H 0.010 0.990 50 H 0.251 0.749 51 H 0.063 0.937 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.961 13.391 10.862 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.172 4.172 3 C -0.174 4.174 4 N -0.119 5.119 5 N -0.064 5.064 6 C -0.052 4.052 7 C -0.146 4.146 8 C 0.367 3.633 9 O -0.378 6.378 10 N -0.333 5.333 11 C -0.014 4.014 12 C -0.169 4.169 13 C -0.153 4.153 14 C -0.128 4.128 15 H 0.089 0.911 16 C 0.060 3.940 17 H 0.054 0.946 18 C -0.166 4.166 19 C -0.187 4.187 20 C 0.026 3.974 21 N -0.317 5.317 22 C -0.347 4.347 23 H 0.092 0.908 24 C -0.201 4.201 25 N -0.568 5.568 26 Si 0.739 3.261 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.213 1.213 30 C 0.005 3.995 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.201 0.799 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.123 0.877 49 H 0.028 0.972 50 H 0.062 0.938 51 H 0.081 0.919 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.950 13.244 10.029 19.365 hybrid contribution -1.427 0.184 -0.542 1.537 sum 8.523 13.428 9.488 18.520 Atomic orbital electron populations 1.20139 0.88386 1.03133 1.02109 1.20683 0.96936 0.90644 1.08895 1.23404 0.87774 0.99777 1.06409 1.73095 1.24441 0.93276 1.21116 1.45500 1.05473 1.03679 1.51796 1.22158 0.83811 0.94507 1.04762 1.21466 0.85849 0.95086 1.12224 1.17113 0.78789 0.83270 0.84168 1.90939 1.46228 1.68976 1.31607 1.48224 1.68440 1.10721 1.05877 1.21689 0.98153 0.97460 0.84128 1.21884 0.98744 0.97862 0.98446 1.21616 1.01544 0.94033 0.98105 1.21982 0.98305 0.99313 0.93232 0.91116 1.20877 0.94444 0.89531 0.89136 0.94601 1.22669 0.97990 0.97522 0.98424 1.23009 0.99616 0.96240 0.99815 1.21944 0.89753 0.94842 0.90818 1.44542 1.27000 1.45071 1.15115 1.18905 1.00544 1.18060 0.97201 0.90836 1.24708 0.98708 0.99067 0.97610 1.69774 1.36437 1.29770 1.20858 0.86245 0.81973 0.77886 0.80009 1.21120 1.21642 1.21303 1.21822 0.97374 0.76474 1.03832 0.91410 0.91100 0.91294 0.79900 0.89576 0.88412 0.88973 0.91661 0.90549 0.91490 0.91173 0.91855 0.91912 0.91917 0.92552 0.92401 0.92745 0.87671 0.97244 0.93809 0.91894 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.28 36.01 0.37 -0.59 16 2 C -0.16 -2.19 6.30 -104.02 -0.65 -2.84 16 3 C 0.00 0.05 12.00 -17.43 -0.21 -0.16 16 4 N -0.29 -3.81 11.90 30.59 0.36 -3.44 16 5 N -0.28 -3.61 3.75 -63.88 -0.24 -3.85 16 6 C 0.09 0.83 11.22 59.85 0.67 1.50 16 7 C -0.02 -0.27 4.66 -82.06 -0.38 -0.65 16 8 C 0.58 10.23 6.65 -12.64 -0.08 10.15 16 9 O -0.51 -11.43 16.53 5.25 0.09 -11.34 16 10 N -0.60 -9.23 2.97 -174.13 -0.52 -9.74 16 11 C 0.11 1.26 6.32 -3.71 -0.02 1.24 16 12 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 13 C -0.11 -1.45 4.88 -26.69 -0.13 -1.58 16 14 C -0.11 -1.81 2.09 -90.50 -0.19 -2.00 16 15 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 16 C 0.17 3.23 2.98 -66.95 -0.20 3.03 16 17 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.13 -2.08 5.19 -24.90 -0.13 -2.21 16 19 C -0.15 -2.72 7.09 -24.58 -0.17 -2.90 16 20 C 0.15 3.57 5.90 -2.53 -0.01 3.56 16 21 N -0.59 -14.37 2.35 -162.58 -0.38 -14.76 16 22 C -0.22 -5.97 9.92 -15.06 -0.15 -6.12 16 23 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 24 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 25 N -0.92 -26.92 10.08 55.49 0.56 -26.36 16 26 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 27 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 C 0.13 2.24 5.28 -3.71 -0.02 2.22 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.85 7.65 -51.93 -0.40 0.45 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.87 6.37 -51.93 -0.33 0.54 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.73 6.99 -51.93 -0.36 0.37 16 44 H 0.06 0.95 5.44 -51.93 -0.28 0.67 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.11 2.85 5.85 -51.93 -0.30 2.54 16 49 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 51 H 0.06 1.06 6.03 -51.93 -0.31 0.74 16 52 H 0.11 2.66 6.59 -51.93 -0.34 2.32 16 LS Contribution 401.88 15.07 6.06 6.06 Total: -1.00 -33.27 401.88 -9.31 -42.58 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.64 Total: 2.29 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.58 Total: 0.79 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.22 Total: -58.15 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.27 -9.31 -42.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963345712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.378 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.93 seconds