Wall clock time and date at job start Wed Apr 1 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31880 * 118.95453 * 2 1 4 4 C 1.32138 * 120.96631 * 179.68232 * 3 2 1 5 5 C 1.39961 * 118.91900 * 0.60604 * 4 3 2 6 6 C 1.47835 * 120.93694 * 179.70085 * 5 4 3 7 7 O 1.21548 * 120.00312 * 173.92486 * 6 5 4 8 8 N 1.34776 * 119.99895 * 353.92518 * 6 5 4 9 9 C 1.46500 * 119.99863 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.46955 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.52706 * 54.91338 * 10 9 8 12 12 C 1.53041 * 109.49850 * 174.99767 * 10 9 8 13 13 C 1.53034 * 109.52625 * 181.30826 * 12 10 9 14 14 C 1.53193 * 109.31420 * 298.63766 * 13 12 10 15 15 N 1.46926 * 108.77193 * 54.63822 * 14 13 12 16 16 C 1.36937 * 120.63065 * 126.41532 * 15 14 13 17 17 H 1.08001 * 119.99953 * 205.88583 * 16 15 14 18 18 C 1.38813 * 119.99867 * 25.87674 * 16 15 14 19 19 N 1.31613 * 120.00093 * 19.10484 * 18 16 15 20 20 Si 1.86802 * 119.99696 * 199.10168 * 18 16 15 21 21 H 1.48499 * 109.47263 * 59.99982 * 20 18 16 22 22 H 1.48497 * 109.47076 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47164 * 300.00176 * 20 18 16 24 24 C 1.46920 * 118.73991 * 306.39171 * 15 14 13 25 25 C 1.39932 * 118.12611 * 359.42898 * 5 4 3 26 26 C 1.50698 * 120.53981 * 180.25149 * 25 5 4 27 27 C 1.53001 * 109.47167 * 87.54847 * 26 25 5 28 28 C 1.52996 * 109.47281 * 207.55187 * 26 25 5 29 29 N 1.31861 * 118.94876 * 180.02562 * 2 1 3 30 30 H 1.08991 * 109.47053 * 269.98195 * 1 2 3 31 31 H 1.09004 * 109.46742 * 29.98595 * 1 2 3 32 32 H 1.09005 * 109.47059 * 149.98125 * 1 2 3 33 33 H 1.07997 * 120.53405 * 180.30994 * 4 3 2 34 34 H 0.96999 * 120.00324 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47516 * 59.99907 * 9 8 6 36 36 H 1.09000 * 109.47031 * 299.99184 * 9 8 6 37 37 H 1.09005 * 109.45809 * 61.28877 * 12 10 9 38 38 H 1.09002 * 109.45543 * 301.32190 * 12 10 9 39 39 H 1.08993 * 109.49867 * 58.59575 * 13 12 10 40 40 H 1.09006 * 109.49922 * 178.68868 * 13 12 10 41 41 H 1.09003 * 109.58398 * 174.42377 * 14 13 12 42 42 H 1.08998 * 109.58617 * 294.70914 * 14 13 12 43 43 H 0.97001 * 119.99735 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.59204 * 173.40141 * 24 15 14 45 45 H 1.09012 * 109.58565 * 293.68138 * 24 15 14 46 46 H 1.09002 * 109.46958 * 327.55411 * 26 25 5 47 47 H 1.09002 * 109.46721 * 60.00419 * 27 26 25 48 48 H 1.08996 * 109.46951 * 179.97438 * 27 26 25 49 49 H 1.08995 * 109.47502 * 300.00735 * 27 26 25 50 50 H 1.09001 * 109.46819 * 59.99986 * 28 26 25 51 51 H 1.08996 * 109.47395 * 179.97438 * 28 26 25 52 52 H 1.09002 * 109.47307 * 300.00010 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2003 0.0063 5 6 4.1855 -0.0002 0.0000 6 6 5.6638 -0.0003 0.0000 7 8 6.2716 -1.0476 0.1060 8 7 6.3378 1.1609 -0.1174 9 6 7.8028 1.1608 -0.1180 10 6 8.3129 2.5960 -0.2637 11 1 7.8779 3.2183 0.5183 12 6 9.8381 2.6111 -0.1394 13 6 10.3463 4.0501 -0.2525 14 6 9.9673 4.6149 -1.6251 15 7 8.5171 4.4708 -1.8117 16 6 7.7453 5.5523 -2.1432 17 1 6.6977 5.5687 -1.8813 18 6 8.3096 6.6275 -2.8158 19 7 9.4467 6.4767 -3.4611 20 14 7.4549 8.2885 -2.8050 21 1 7.3244 8.7689 -1.4059 22 1 8.2551 9.2620 -3.5906 23 1 6.1055 8.1548 -3.4103 24 6 7.9107 3.1441 -1.6362 25 6 3.4660 -1.2004 -0.0004 26 6 4.1856 -2.5245 -0.0012 27 6 4.4837 -2.9439 1.4396 28 6 3.3052 -3.5829 -0.6687 29 7 2.1453 -1.1539 -0.0005 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8899 -0.5141 33 1 3.9817 2.1492 0.0113 34 1 5.8529 1.9967 -0.2024 35 1 8.1658 0.5601 -0.9520 36 1 8.1664 0.7390 0.8190 37 1 10.2734 2.0084 -0.9366 38 1 10.1277 2.1985 0.8271 39 1 9.8923 4.6588 0.5294 40 1 11.4305 4.0630 -0.1406 41 1 10.2390 5.6694 -1.6740 42 1 10.4946 4.0652 -2.4047 43 1 9.8412 7.2282 -3.9308 44 1 6.8253 3.2279 -1.6926 45 1 8.2665 2.4733 -2.4185 46 1 5.1209 -2.4293 -0.5528 47 1 3.5484 -3.0390 1.9912 48 1 5.0037 -3.9018 1.4390 49 1 5.1108 -2.1899 1.9152 50 1 3.0929 -3.2841 -1.6952 51 1 3.8258 -4.5405 -0.6698 52 1 2.3699 -3.6780 -0.1171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023628811.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:29 Heat of formation + Delta-G solvation = 15.438722 kcal Electronic energy + Delta-G solvation = -30907.461490 eV Core-core repulsion = 26907.002845 eV Total energy + Delta-G solvation = -4000.458645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 4.33 seconds Orbital eigenvalues (eV) -41.68351 -39.57303 -37.90208 -36.40556 -34.85916 -33.88387 -33.03143 -32.37438 -30.58144 -30.46874 -29.09092 -27.23656 -25.76544 -25.32276 -24.94157 -23.64772 -22.17554 -21.20501 -20.89724 -20.69212 -19.18748 -18.02457 -17.81447 -16.69290 -16.35657 -15.85227 -15.65608 -15.20109 -14.90748 -14.79847 -14.44905 -14.25671 -14.05761 -13.75065 -13.59550 -13.47435 -13.19545 -12.85916 -12.77756 -12.72487 -12.41410 -12.31966 -12.26547 -12.22621 -11.86261 -11.67601 -11.42340 -11.37869 -11.16212 -11.05493 -10.76996 -10.71720 -10.56345 -10.29823 -10.23009 -9.98620 -9.79579 -9.71070 -9.57895 -9.50041 -9.48226 -9.03246 -8.49836 -6.75874 -5.83932 -3.24541 0.18899 0.77414 2.67176 3.00979 3.34957 3.41531 3.42183 3.50066 3.54953 3.71342 4.03807 4.44002 4.47569 4.59956 4.80548 4.94784 4.99747 5.04086 5.07206 5.20592 5.22619 5.29800 5.36986 5.39038 5.48667 5.54668 5.55731 5.59404 5.71452 5.76089 5.79336 5.85360 5.90709 5.92496 6.03968 6.12341 6.15921 6.22447 6.27275 6.30734 6.40026 6.52308 6.64127 6.67374 6.70294 6.79791 6.88774 7.34905 7.37168 7.62543 7.73713 7.76568 8.04913 8.38190 9.15299 9.79493 10.35024 11.24334 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.002687 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.905215 B =10417.658358 C =12196.816236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.336 3.664 3 N -0.525 5.525 4 C 0.191 3.809 5 C -0.251 4.251 6 C 0.567 3.433 7 O -0.528 6.528 8 N -0.715 5.715 9 C 0.128 3.872 10 C -0.119 4.119 11 H 0.074 0.926 12 C -0.099 4.099 13 C -0.142 4.142 14 C 0.167 3.833 15 N -0.591 5.591 16 C -0.256 4.256 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.154 3.846 25 C 0.246 3.754 26 C -0.059 4.059 27 C -0.127 4.127 28 C -0.138 4.138 29 N -0.519 5.519 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.173 0.827 34 H 0.401 0.599 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.088 0.912 42 H 0.017 0.983 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.019 0.981 46 H 0.123 0.877 47 H 0.049 0.951 48 H 0.065 0.935 49 H 0.060 0.940 50 H 0.050 0.950 51 H 0.058 0.942 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 -15.854 9.250 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 N -0.239 5.239 4 C 0.024 3.976 5 C -0.259 4.259 6 C 0.353 3.647 7 O -0.406 6.406 8 N -0.367 5.367 9 C 0.005 3.995 10 C -0.139 4.139 11 H 0.092 0.908 12 C -0.137 4.137 13 C -0.181 4.181 14 C 0.042 3.958 15 N -0.313 5.313 16 C -0.386 4.386 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.027 3.973 25 C 0.098 3.902 26 C -0.078 4.078 27 C -0.185 4.185 28 C -0.196 4.196 29 N -0.233 5.233 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.190 0.810 34 H 0.237 0.763 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.107 0.893 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.037 0.963 46 H 0.140 0.860 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.077 0.923 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.847 -16.439 9.188 22.249 hybrid contribution 0.337 1.568 -0.129 1.609 sum -11.510 -14.871 9.059 20.873 Atomic orbital electron populations 1.20638 0.85352 1.04511 1.04113 1.23547 0.98475 0.83383 0.87526 1.68307 1.09641 1.30107 1.15863 1.23527 0.89729 0.97746 0.86633 1.21617 0.96230 0.96346 1.11711 1.17705 0.85778 0.84229 0.77026 1.90705 1.69433 1.30568 1.49893 1.45995 1.08426 1.08748 1.73481 1.21533 0.77705 0.98322 1.01962 1.21972 0.97031 0.93369 1.01577 0.90768 1.21336 0.93963 0.98142 1.00283 1.22167 0.98810 0.95305 1.01801 1.20825 0.83525 1.01468 0.90030 1.44045 1.03836 1.02997 1.80449 1.19124 0.93818 0.94853 1.30756 0.91669 1.24978 0.97929 0.99628 0.97044 1.70043 1.20431 1.30351 1.33642 0.86394 0.78852 0.84074 0.77619 1.21017 1.21627 1.20873 1.20885 0.96357 0.88144 0.91942 1.21977 0.88761 0.95163 0.84258 1.20586 0.99316 0.88408 0.99495 1.21622 1.01091 1.01855 0.93938 1.21745 0.99934 0.97548 1.00333 1.68206 1.09128 1.29835 1.16144 0.89281 0.89246 0.89366 0.80982 0.76311 0.91197 0.91571 0.92422 0.93379 0.92728 0.93130 0.89348 0.96471 0.93531 0.93317 0.96307 0.85955 0.93168 0.91587 0.92088 0.93043 0.92316 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.31 36.01 0.37 -0.27 16 2 C 0.34 3.76 7.64 -157.06 -1.20 2.56 16 3 N -0.52 -6.29 10.32 -10.39 -0.11 -6.40 16 4 C 0.19 2.16 10.80 -16.77 -0.18 1.98 16 5 C -0.25 -3.06 5.91 -104.69 -0.62 -3.68 16 6 C 0.57 7.38 7.73 -12.33 -0.10 7.29 16 7 O -0.53 -7.80 12.37 5.32 0.07 -7.74 16 8 N -0.72 -8.74 5.29 -61.25 -0.32 -9.07 16 9 C 0.13 1.69 5.07 -4.04 -0.02 1.67 16 10 C -0.12 -1.82 2.37 -90.51 -0.21 -2.03 16 11 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 12 C -0.10 -1.54 5.17 -26.69 -0.14 -1.67 16 13 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 14 C 0.17 3.84 5.34 -3.71 -0.02 3.82 16 15 N -0.59 -14.06 3.00 -172.33 -0.52 -14.57 16 16 C -0.26 -6.75 9.60 -15.06 -0.14 -6.89 16 17 H 0.07 1.66 7.89 -52.49 -0.41 1.25 16 18 C 0.00 0.08 4.88 -17.43 -0.09 0.00 16 19 N -0.90 -25.60 11.17 55.49 0.62 -24.99 16 20 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.15 2.94 5.60 -3.73 -0.02 2.92 16 25 C 0.25 3.00 5.83 -81.82 -0.48 2.53 16 26 C -0.06 -0.66 2.39 -91.77 -0.22 -0.88 16 27 C -0.13 -1.31 8.86 37.16 0.33 -0.98 16 28 C -0.14 -1.32 8.73 37.16 0.32 -0.99 16 29 N -0.52 -6.14 9.22 -6.67 -0.06 -6.20 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.17 1.55 6.58 -52.49 -0.35 1.20 16 34 H 0.40 4.40 5.88 -40.82 -0.24 4.16 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 2.30 5.95 -51.93 -0.31 1.99 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.05 0.89 7.13 -51.93 -0.37 0.52 16 45 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 46 H 0.12 1.55 5.66 -51.93 -0.29 1.26 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.71 7.29 -51.93 -0.38 0.33 16 50 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.06 0.62 7.80 -51.93 -0.41 0.22 16 LS Contribution 407.35 15.07 6.14 6.14 Total: -1.00 -30.70 407.35 -10.44 -41.14 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.66 Total: 2.91 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -2.57 Total: 2.63 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -0.39 Total: -61.22 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.07 Total: -7.74 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.70 -10.44 -41.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023628811.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.582 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.33 seconds