Wall clock time and date at job start Wed Apr 1 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31880 * 118.95453 * 2 1 4 4 C 1.32138 * 120.96631 * 179.68232 * 3 2 1 5 5 C 1.39961 * 118.91900 * 0.60604 * 4 3 2 6 6 C 1.47835 * 120.93694 * 179.70085 * 5 4 3 7 7 O 1.21548 * 120.00312 * 173.92486 * 6 5 4 8 8 N 1.34776 * 119.99895 * 353.92518 * 6 5 4 9 9 C 1.46500 * 119.99863 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.46955 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.52706 * 54.91338 * 10 9 8 12 12 C 1.53041 * 109.49850 * 174.99767 * 10 9 8 13 13 C 1.53034 * 109.52625 * 181.30826 * 12 10 9 14 14 C 1.53193 * 109.31420 * 298.63766 * 13 12 10 15 15 N 1.46926 * 108.77193 * 54.63822 * 14 13 12 16 16 C 1.36937 * 120.63065 * 126.41532 * 15 14 13 17 17 H 1.08001 * 119.99953 * 205.88583 * 16 15 14 18 18 C 1.38813 * 119.99867 * 25.87674 * 16 15 14 19 19 N 1.31613 * 120.00093 * 19.10484 * 18 16 15 20 20 Si 1.86802 * 119.99696 * 199.10168 * 18 16 15 21 21 H 1.48499 * 109.47263 * 59.99982 * 20 18 16 22 22 H 1.48497 * 109.47076 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47164 * 300.00176 * 20 18 16 24 24 C 1.46920 * 118.73991 * 306.39171 * 15 14 13 25 25 C 1.39932 * 118.12611 * 359.42898 * 5 4 3 26 26 C 1.50698 * 120.53981 * 180.25149 * 25 5 4 27 27 C 1.53001 * 109.47167 * 87.54847 * 26 25 5 28 28 C 1.52996 * 109.47281 * 207.55187 * 26 25 5 29 29 N 1.31861 * 118.94876 * 180.02562 * 2 1 3 30 30 H 1.08991 * 109.47053 * 269.98195 * 1 2 3 31 31 H 1.09004 * 109.46742 * 29.98595 * 1 2 3 32 32 H 1.09005 * 109.47059 * 149.98125 * 1 2 3 33 33 H 1.07997 * 120.53405 * 180.30994 * 4 3 2 34 34 H 0.96999 * 120.00324 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47516 * 59.99907 * 9 8 6 36 36 H 1.09000 * 109.47031 * 299.99184 * 9 8 6 37 37 H 1.09005 * 109.45809 * 61.28877 * 12 10 9 38 38 H 1.09002 * 109.45543 * 301.32190 * 12 10 9 39 39 H 1.08993 * 109.49867 * 58.59575 * 13 12 10 40 40 H 1.09006 * 109.49922 * 178.68868 * 13 12 10 41 41 H 1.09003 * 109.58398 * 174.42377 * 14 13 12 42 42 H 1.08998 * 109.58617 * 294.70914 * 14 13 12 43 43 H 0.97001 * 119.99735 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.59204 * 173.40141 * 24 15 14 45 45 H 1.09012 * 109.58565 * 293.68138 * 24 15 14 46 46 H 1.09002 * 109.46958 * 327.55411 * 26 25 5 47 47 H 1.09002 * 109.46721 * 60.00419 * 27 26 25 48 48 H 1.08996 * 109.46951 * 179.97438 * 27 26 25 49 49 H 1.08995 * 109.47502 * 300.00735 * 27 26 25 50 50 H 1.09001 * 109.46819 * 59.99986 * 28 26 25 51 51 H 1.08996 * 109.47395 * 179.97438 * 28 26 25 52 52 H 1.09002 * 109.47307 * 300.00010 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2003 0.0063 5 6 4.1855 -0.0002 0.0000 6 6 5.6638 -0.0003 0.0000 7 8 6.2716 -1.0476 0.1060 8 7 6.3378 1.1609 -0.1174 9 6 7.8028 1.1608 -0.1180 10 6 8.3129 2.5960 -0.2637 11 1 7.8779 3.2183 0.5183 12 6 9.8381 2.6111 -0.1394 13 6 10.3463 4.0501 -0.2525 14 6 9.9673 4.6149 -1.6251 15 7 8.5171 4.4708 -1.8117 16 6 7.7453 5.5523 -2.1432 17 1 6.6977 5.5687 -1.8813 18 6 8.3096 6.6275 -2.8158 19 7 9.4467 6.4767 -3.4611 20 14 7.4549 8.2885 -2.8050 21 1 7.3244 8.7689 -1.4059 22 1 8.2551 9.2620 -3.5906 23 1 6.1055 8.1548 -3.4103 24 6 7.9107 3.1441 -1.6362 25 6 3.4660 -1.2004 -0.0004 26 6 4.1856 -2.5245 -0.0012 27 6 4.4837 -2.9439 1.4396 28 6 3.3052 -3.5829 -0.6687 29 7 2.1453 -1.1539 -0.0005 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8899 -0.5141 33 1 3.9817 2.1492 0.0113 34 1 5.8529 1.9967 -0.2024 35 1 8.1658 0.5601 -0.9520 36 1 8.1664 0.7390 0.8190 37 1 10.2734 2.0084 -0.9366 38 1 10.1277 2.1985 0.8271 39 1 9.8923 4.6588 0.5294 40 1 11.4305 4.0630 -0.1406 41 1 10.2390 5.6694 -1.6740 42 1 10.4946 4.0652 -2.4047 43 1 9.8412 7.2282 -3.9308 44 1 6.8253 3.2279 -1.6926 45 1 8.2665 2.4733 -2.4185 46 1 5.1209 -2.4293 -0.5528 47 1 3.5484 -3.0390 1.9912 48 1 5.0037 -3.9018 1.4390 49 1 5.1108 -2.1899 1.9152 50 1 3.0929 -3.2841 -1.6952 51 1 3.8258 -4.5405 -0.6698 52 1 2.3699 -3.6780 -0.1171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023628811.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:16 Heat of formation + Delta-G solvation = -1.934951 kcal Electronic energy + Delta-G solvation = -30908.214869 eV Core-core repulsion = 26907.002845 eV Total energy + Delta-G solvation = -4001.212024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.56630 -40.62200 -39.33953 -37.32541 -36.14562 -34.93774 -34.42526 -33.26342 -32.30051 -31.89350 -29.93985 -28.02618 -27.27200 -26.86471 -25.84854 -24.58281 -23.79553 -22.61245 -21.87473 -21.64487 -20.66549 -18.93069 -18.91423 -18.46984 -17.23377 -16.84351 -16.76100 -16.67094 -16.23265 -15.79818 -15.64188 -15.44038 -15.32311 -15.01107 -14.86715 -14.53103 -14.35671 -14.06866 -13.98150 -13.71516 -13.61138 -13.37885 -13.27019 -13.02326 -13.02185 -12.86621 -12.76672 -12.47610 -12.46331 -12.29754 -12.25223 -12.05291 -11.95638 -11.80702 -11.63214 -11.55620 -11.28544 -11.09600 -10.68692 -10.61008 -10.50206 -10.38295 -10.05259 -8.69834 -7.86480 -5.29232 -0.69595 -0.11090 1.47753 1.50090 1.56392 1.70060 2.01072 2.51943 2.61094 2.77454 2.88858 3.19431 3.27887 3.55606 3.59846 3.73226 3.97533 4.02979 4.03881 4.08489 4.11887 4.19363 4.30346 4.42796 4.58240 4.59857 4.63256 4.68809 4.76215 4.77596 4.81038 4.89476 4.89634 4.92702 4.94150 4.99760 5.01661 5.12317 5.13319 5.19469 5.27948 5.32572 5.35317 5.39113 5.44681 5.49116 5.58699 5.68080 5.80068 5.80341 6.36974 6.40130 6.90095 7.05381 7.15393 7.87937 8.38552 9.19664 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.002687 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.905215 B =10417.658358 C =12196.816236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.329 3.671 3 N -0.540 5.540 4 C 0.192 3.808 5 C -0.264 4.264 6 C 0.570 3.430 7 O -0.547 6.547 8 N -0.711 5.711 9 C 0.140 3.860 10 C -0.101 4.101 11 H 0.078 0.922 12 C -0.096 4.096 13 C -0.130 4.130 14 C 0.170 3.830 15 N -0.609 5.609 16 C -0.261 4.261 17 H 0.072 0.928 18 C -0.053 4.053 19 N -0.936 5.936 20 Si 0.963 3.037 21 H -0.277 1.277 22 H -0.298 1.298 23 H -0.275 1.275 24 C 0.151 3.849 25 C 0.236 3.764 26 C -0.060 4.060 27 C -0.120 4.120 28 C -0.131 4.131 29 N -0.525 5.525 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.192 0.808 34 H 0.408 0.592 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.052 0.948 42 H -0.008 1.008 43 H 0.249 0.751 44 H 0.056 0.944 45 H 0.006 0.994 46 H 0.107 0.893 47 H 0.054 0.946 48 H 0.078 0.922 49 H 0.044 0.956 50 H 0.044 0.956 51 H 0.073 0.927 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.832 -16.773 10.909 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 N -0.254 5.254 4 C 0.025 3.975 5 C -0.272 4.272 6 C 0.356 3.644 7 O -0.427 6.427 8 N -0.363 5.363 9 C 0.016 3.984 10 C -0.122 4.122 11 H 0.097 0.903 12 C -0.134 4.134 13 C -0.169 4.169 14 C 0.045 3.955 15 N -0.332 5.332 16 C -0.391 4.391 17 H 0.090 0.910 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.792 3.208 21 H -0.203 1.203 22 H -0.224 1.224 23 H -0.201 1.201 24 C 0.026 3.974 25 C 0.089 3.911 26 C -0.078 4.078 27 C -0.178 4.178 28 C -0.189 4.189 29 N -0.240 5.240 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.209 0.791 34 H 0.245 0.755 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.010 0.990 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.024 0.976 46 H 0.124 0.876 47 H 0.073 0.927 48 H 0.097 0.903 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.091 0.909 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.334 -17.376 10.867 24.450 hybrid contribution 0.751 1.807 -0.676 2.070 sum -12.584 -15.569 10.190 22.463 Atomic orbital electron populations 1.20783 0.82843 1.05412 1.05334 1.24291 1.00048 0.83031 0.86282 1.68400 1.09863 1.30546 1.16622 1.23853 0.89781 0.98242 0.85650 1.21567 0.95711 0.96843 1.13052 1.17783 0.86096 0.83968 0.76529 1.90700 1.69887 1.31236 1.50842 1.45911 1.08090 1.08963 1.73298 1.21345 0.78170 0.96486 1.02391 1.21730 0.97183 0.94476 0.98791 0.90325 1.21332 0.93756 0.96240 1.02122 1.21993 1.00082 0.96743 0.98101 1.20663 0.83307 0.99256 0.92315 1.44319 1.04035 1.04271 1.80576 1.19526 0.94372 0.95692 1.29516 0.90994 1.25722 0.98841 1.02805 0.97414 1.70203 1.22131 1.30749 1.35126 0.85400 0.77843 0.80011 0.77577 1.20327 1.22445 1.20120 1.21037 0.96571 0.85923 0.93916 1.22228 0.89215 0.95644 0.84029 1.20570 0.98789 0.88594 0.99891 1.21563 1.01089 1.01924 0.93236 1.21690 0.99804 0.97687 0.99670 1.68286 1.08868 1.30171 1.16685 0.87704 0.88480 0.88283 0.79115 0.75546 0.91901 0.90170 0.92573 0.89971 0.92844 0.91338 0.92926 0.99015 0.94239 0.92599 0.97589 0.87553 0.92729 0.90311 0.93636 0.93704 0.90856 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 10.31 71.24 0.73 -0.35 16 2 C 0.33 6.86 7.64 138.71 1.06 7.92 16 3 N -0.54 -12.18 10.32 -186.79 -1.93 -14.11 16 4 C 0.19 4.09 10.80 85.06 0.92 5.01 16 5 C -0.26 -6.20 5.91 -19.91 -0.12 -6.31 16 6 C 0.57 14.22 7.73 86.78 0.67 14.89 16 7 O -0.55 -15.72 12.37 -3.87 -0.05 -15.77 16 8 N -0.71 -16.17 5.29 -465.98 -2.46 -18.64 16 9 C 0.14 3.38 5.07 86.38 0.44 3.82 16 10 C -0.10 -2.89 2.37 -10.72 -0.03 -2.92 16 11 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 12 C -0.10 -2.75 5.17 30.62 0.16 -2.60 16 13 C -0.13 -4.55 6.08 30.67 0.19 -4.36 16 14 C 0.17 7.99 5.34 86.36 0.46 8.45 16 15 N -0.61 -29.13 3.00 -699.14 -2.10 -31.23 16 16 C -0.26 -13.80 9.60 84.03 0.81 -12.99 16 17 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 18 C -0.05 -2.88 4.88 84.86 0.41 -2.47 16 19 N -0.94 -54.92 11.17 21.65 0.24 -54.68 16 20 Si 0.96 43.98 29.59 68.60 2.03 46.01 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.15 5.68 5.60 86.35 0.48 6.17 16 25 C 0.24 5.58 5.83 42.92 0.25 5.83 16 26 C -0.06 -1.28 2.39 -11.54 -0.03 -1.31 16 27 C -0.12 -2.34 8.86 71.98 0.64 -1.71 16 28 C -0.13 -2.35 8.73 71.98 0.63 -1.72 16 29 N -0.53 -11.82 9.22 -175.03 -1.61 -13.44 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.19 3.10 6.58 -2.91 -0.02 3.08 16 34 H 0.41 8.19 5.88 -92.71 -0.54 7.64 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 2.13 8.14 -2.38 -0.02 2.12 16 41 H 0.05 2.83 5.95 -2.39 -0.01 2.82 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 44 H 0.06 1.98 7.13 -2.38 -0.02 1.96 16 45 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 46 H 0.11 2.67 5.66 -2.39 -0.01 2.65 16 47 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.04 1.02 7.29 -2.39 -0.02 1.00 16 50 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.07 1.17 7.80 -2.39 -0.02 1.15 16 Total: -1.00 -67.29 407.35 2.17 -65.12 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.37 Total: 21.38 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 7.68 Total: 15.36 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -7.86 Total: -132.10 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.05 Total: -15.77 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -67.29 2.17 -65.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023628811.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.187 kcal (2) G-P(sol) polarization free energy of solvation -67.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds