Wall clock time and date at job start Wed Apr 1 2020 05:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35370 * 127.24935 * 2 1 4 4 N 1.35026 * 107.22849 * 179.97438 * 3 2 1 5 5 C 1.46505 * 124.88488 * 180.02562 * 4 3 2 6 6 N 1.28466 * 110.23511 * 359.72880 * 4 3 2 7 7 C 1.31812 * 110.06940 * 0.44946 * 6 4 3 8 8 C 1.47711 * 126.51918 * 179.81863 * 7 6 4 9 9 O 1.21566 * 120.00124 * 185.94660 * 8 7 6 10 10 N 1.34782 * 119.99949 * 5.94627 * 8 7 6 11 11 C 1.46924 * 120.63134 * 8.05956 * 10 8 7 12 12 C 1.53184 * 108.77541 * 126.37056 * 11 10 8 13 13 C 1.53041 * 109.31645 * 54.63660 * 12 11 10 14 14 C 1.53040 * 109.53423 * 298.63685 * 13 12 11 15 15 C 1.46922 * 120.63232 * 188.04029 * 10 8 7 16 16 H 1.09002 * 109.59054 * 113.69466 * 15 10 8 17 17 C 1.53003 * 109.58484 * 353.41617 * 15 10 8 18 18 H 1.08997 * 109.87589 * 312.08472 * 17 15 10 19 19 C 1.54322 * 110.01073 * 73.18496 * 17 15 10 20 20 C 1.55451 * 102.96839 * 141.68432 * 19 17 15 21 21 C 1.54907 * 101.44885 * 324.51642 * 20 19 17 22 22 N 1.47025 * 109.88130 * 191.07043 * 17 15 10 23 23 C 1.36935 * 125.64891 * 61.46806 * 22 17 15 24 24 H 1.08002 * 119.99933 * 286.59240 * 23 22 17 25 25 C 1.38813 * 120.00020 * 106.59015 * 23 22 17 26 26 N 1.31618 * 119.99976 * 184.47705 * 25 23 22 27 27 Si 1.86803 * 120.00281 * 4.47865 * 25 23 22 28 28 H 1.48494 * 109.47271 * 94.65094 * 27 25 23 29 29 H 1.48501 * 109.47077 * 214.65549 * 27 25 23 30 30 H 1.48504 * 109.46828 * 334.65163 * 27 25 23 31 31 H 1.09005 * 109.46826 * 270.00073 * 1 2 3 32 32 H 1.08996 * 109.47313 * 29.99585 * 1 2 3 33 33 H 1.08998 * 109.47407 * 149.99950 * 1 2 3 34 34 H 1.08000 * 126.38173 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.46980 * 90.00094 * 5 4 3 36 36 H 1.09001 * 109.47283 * 210.00197 * 5 4 3 37 37 H 1.08999 * 109.46788 * 329.99986 * 5 4 3 38 38 H 1.08997 * 109.59050 * 246.15911 * 11 10 8 39 39 H 1.09005 * 109.58745 * 6.43876 * 11 10 8 40 40 H 1.09005 * 109.50048 * 174.59329 * 12 11 10 41 41 H 1.09003 * 109.50230 * 294.68437 * 12 11 10 42 42 H 1.08996 * 109.45824 * 58.65459 * 13 12 11 43 43 H 1.08995 * 109.45970 * 178.61595 * 13 12 11 44 44 H 1.09001 * 109.49907 * 301.40695 * 14 13 12 45 45 H 1.09003 * 109.49856 * 181.31350 * 14 13 12 46 46 H 1.09001 * 110.72070 * 260.03975 * 19 17 15 47 47 H 1.08995 * 110.72425 * 23.14384 * 19 17 15 48 48 H 1.08999 * 111.11630 * 206.46281 * 20 19 17 49 49 H 1.08995 * 111.01548 * 82.52603 * 20 19 17 50 50 H 1.09001 * 110.36555 * 278.11246 * 21 20 19 51 51 H 1.08996 * 110.36478 * 155.90261 * 21 20 19 52 52 H 0.97001 * 120.00436 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6153 0.0006 5 6 4.7937 1.4576 0.0013 6 7 3.5998 -0.6694 0.0066 7 6 2.3635 -1.1263 0.0006 8 6 1.9505 -2.5446 0.0008 9 8 0.7758 -2.8356 -0.1142 10 7 2.8761 -3.5159 0.1285 11 6 4.2720 -3.1831 0.4439 12 6 4.7039 -3.9851 1.6755 13 6 4.4543 -5.4738 1.4232 14 6 2.9600 -5.7103 1.1925 15 6 2.5084 -4.9278 -0.0447 16 1 2.9997 -5.3273 -0.9319 17 6 0.9911 -5.0471 -0.2013 18 1 0.4917 -4.4680 0.5755 19 6 0.5622 -4.5376 -1.5934 20 6 -0.5648 -5.5298 -1.9960 21 6 -0.0436 -6.8529 -1.3818 22 7 0.5884 -6.4582 -0.1097 23 6 0.7705 -7.2712 0.9770 24 1 1.7572 -7.6390 1.2170 25 6 -0.3131 -7.6226 1.7703 26 7 -0.1260 -8.3307 2.8639 27 14 -2.0370 -7.0905 1.2858 28 1 -2.6921 -8.1774 0.5146 29 1 -2.8290 -6.8047 2.5090 30 1 -1.9602 -5.8664 0.4485 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3634 -0.8899 -0.5138 34 1 2.0220 2.1138 -0.0004 35 1 5.0905 1.6663 1.0291 36 1 5.6030 0.9384 -0.5122 37 1 4.5795 2.3947 -0.5125 38 1 4.9092 -3.4410 -0.4020 39 1 4.3552 -2.1164 0.6521 40 1 5.7650 -3.8207 1.8629 41 1 4.1266 -3.6611 2.5415 42 1 5.0125 -5.7914 0.5426 43 1 4.7837 -6.0489 2.2886 44 1 2.3991 -5.3700 2.0630 45 1 2.7799 -6.7739 1.0360 46 1 0.1755 -3.5205 -1.5295 47 1 1.3938 -4.5892 -2.2960 48 1 -0.6497 -5.6088 -3.0798 49 1 -1.5171 -5.2410 -1.5512 50 1 0.6901 -7.3147 -2.0425 51 1 -0.8714 -7.5377 -1.1977 52 1 -0.8831 -8.5760 3.4184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025229294.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:40 Heat of formation + Delta-G solvation = 122.229948 kcal Electronic energy + Delta-G solvation = -33388.573305 eV Core-core repulsion = 29392.745475 eV Total energy + Delta-G solvation = -3995.827830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -42.72485 -40.12631 -37.13752 -36.69134 -34.00275 -32.83262 -32.40140 -31.67835 -31.04669 -29.66829 -28.24336 -27.38132 -26.43963 -24.51799 -24.21584 -22.65077 -22.04292 -20.86523 -20.42597 -19.73770 -19.33442 -18.77494 -17.26406 -16.90134 -16.43708 -15.97625 -15.47777 -15.29621 -14.75263 -14.30486 -13.99717 -13.88569 -13.75425 -13.63419 -13.36812 -13.24318 -12.89076 -12.76721 -12.62406 -12.59523 -12.50032 -12.27537 -12.07800 -11.90763 -11.72177 -11.32975 -11.09528 -10.85556 -10.80740 -10.69911 -10.59179 -10.28722 -10.03551 -9.99242 -9.81312 -9.68152 -9.41150 -9.09491 -9.04101 -8.71242 -8.64321 -8.29168 -7.84725 -6.13643 -5.62565 -3.79073 1.65127 2.12170 2.34627 3.44596 3.46816 3.56169 3.71180 3.72783 4.21548 4.63423 4.66195 4.72307 4.77103 4.99516 5.12613 5.26775 5.28079 5.33482 5.34186 5.44517 5.55054 5.61286 5.68573 5.81881 5.86875 5.87890 5.89934 5.95593 6.07459 6.09474 6.16088 6.23095 6.27581 6.30913 6.47787 6.48344 6.51692 6.59534 6.60502 6.68865 6.82126 6.86359 6.92543 7.01084 7.05888 7.19025 7.32048 7.48056 7.68270 7.82414 8.00820 8.27411 8.66808 8.81880 9.09653 9.72028 10.56899 11.19903 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.004204 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.508603 B = 6658.682651 C = 7644.389356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.146 4.146 3 C -0.027 4.027 4 N -0.294 5.294 5 C 0.089 3.911 6 N -0.265 5.265 7 C -0.001 4.001 8 C 0.580 3.420 9 O -0.500 6.500 10 N -0.590 5.590 11 C 0.092 3.908 12 C -0.132 4.132 13 C -0.123 4.123 14 C -0.132 4.132 15 C 0.145 3.855 16 H 0.056 0.944 17 C 0.163 3.837 18 H 0.076 0.924 19 C -0.123 4.123 20 C -0.140 4.140 21 C 0.120 3.880 22 N -0.604 5.604 23 C -0.266 4.266 24 H 0.081 0.919 25 C 0.059 3.941 26 N -0.900 5.900 27 Si 0.886 3.114 28 H -0.288 1.288 29 H -0.301 1.301 30 H -0.251 1.251 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.177 0.823 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.118 0.882 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.119 0.881 46 H 0.099 0.901 47 H 0.042 0.958 48 H 0.052 0.948 49 H 0.061 0.939 50 H 0.019 0.981 51 H 0.035 0.965 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.018 20.909 -6.555 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C -0.169 4.169 4 N -0.081 5.081 5 C -0.052 4.052 6 N -0.101 5.101 7 C -0.162 4.162 8 C 0.367 3.633 9 O -0.375 6.375 10 N -0.323 5.323 11 C -0.032 4.032 12 C -0.170 4.170 13 C -0.161 4.161 14 C -0.169 4.169 15 C 0.042 3.958 16 H 0.074 0.926 17 C 0.057 3.943 18 H 0.094 0.906 19 C -0.161 4.161 20 C -0.178 4.178 21 C -0.004 4.004 22 N -0.331 5.331 23 C -0.394 4.394 24 H 0.098 0.902 25 C -0.145 4.145 26 N -0.538 5.538 27 Si 0.714 3.286 28 H -0.215 1.215 29 H -0.229 1.229 30 H -0.175 1.175 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.194 0.806 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.136 0.864 46 H 0.116 0.884 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.037 0.963 51 H 0.054 0.946 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.551 20.347 -6.389 23.794 hybrid contribution -1.344 0.518 -0.102 1.444 sum 9.207 20.865 -6.491 23.711 Atomic orbital electron populations 1.20192 0.88118 1.03101 1.02392 1.20388 0.97475 0.90495 1.07232 1.22559 0.83830 1.00340 1.10199 1.45421 1.06834 1.04115 1.51693 1.22112 0.85047 0.93807 1.04217 1.73422 1.23115 0.93022 1.20498 1.22260 0.89042 0.95699 1.09156 1.17045 0.85723 0.82036 0.78490 1.90763 1.17462 1.80669 1.48599 1.48031 1.08773 1.06835 1.68678 1.22289 0.81712 1.02472 0.96732 1.21911 1.00208 0.96743 0.98155 1.21649 0.98799 0.94858 1.00808 1.22508 0.92518 1.04286 0.97585 1.22069 0.98930 0.77391 0.97449 0.92593 1.21688 0.89584 0.86485 0.96509 0.90639 1.23177 0.97050 0.99955 0.95886 1.22868 0.98991 0.97612 0.98361 1.21854 0.95096 0.94066 0.89398 1.44656 1.70470 1.06921 1.11090 1.18536 0.94540 1.24939 1.01433 0.90227 1.26211 0.99324 0.94957 0.93975 1.69817 1.31426 1.38899 1.13642 0.86566 0.84225 0.80209 0.77573 1.21492 1.22883 1.17475 0.91566 0.92344 0.89485 0.80564 0.89935 0.88686 0.88896 0.92578 0.86523 0.91980 0.92029 0.92927 0.92378 0.91639 0.86372 0.88360 0.93961 0.92883 0.91987 0.96321 0.94624 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.99 36.00 0.36 -0.62 16 2 C -0.15 -1.93 6.25 -104.40 -0.65 -2.58 16 3 C -0.03 -0.26 11.40 -17.17 -0.20 -0.46 16 4 N -0.29 -2.93 3.70 -68.12 -0.25 -3.18 16 5 C 0.09 0.42 11.31 59.85 0.68 1.09 16 6 N -0.27 -3.53 8.47 33.42 0.28 -3.25 16 7 C 0.00 -0.02 6.83 -82.76 -0.56 -0.59 16 8 C 0.58 10.55 7.25 -12.39 -0.09 10.46 16 9 O -0.50 -10.10 7.76 5.31 0.04 -10.06 16 10 N -0.59 -10.49 2.97 -166.38 -0.49 -10.99 16 11 C 0.09 1.36 6.10 -3.72 -0.02 1.34 16 12 C -0.13 -1.92 6.08 -26.61 -0.16 -2.08 16 13 C -0.12 -2.04 5.88 -26.69 -0.16 -2.19 16 14 C -0.13 -2.71 3.99 -26.61 -0.11 -2.82 16 15 C 0.15 2.90 2.64 -67.60 -0.18 2.72 16 16 H 0.06 1.13 7.88 -51.93 -0.41 0.72 16 17 C 0.16 3.66 2.29 -66.95 -0.15 3.51 16 18 H 0.08 1.95 6.02 -51.76 -0.31 1.64 16 19 C -0.12 -2.49 5.28 -24.74 -0.13 -2.62 16 20 C -0.14 -2.82 7.02 -24.42 -0.17 -2.99 16 21 C 0.12 2.73 6.25 -2.53 -0.02 2.72 16 22 N -0.60 -15.01 2.01 -162.58 -0.33 -15.33 16 23 C -0.27 -7.41 8.29 -15.06 -0.12 -7.53 16 24 H 0.08 2.34 5.29 -52.49 -0.28 2.06 16 25 C 0.06 1.73 5.50 -17.43 -0.10 1.63 16 26 N -0.90 -27.45 13.97 55.49 0.78 -26.67 16 27 Si 0.89 23.34 26.18 -169.99 -4.45 18.89 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.30 -8.04 7.11 56.52 0.40 -7.63 16 30 H -0.25 -6.58 5.97 56.52 0.34 -6.24 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.26 6.62 -51.93 -0.34 0.92 16 34 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.19 8.13 -51.93 -0.42 -0.23 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.12 1.66 4.21 -66.53 -0.28 1.38 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.06 1.53 8.10 -51.93 -0.42 1.11 16 45 H 0.12 2.77 4.34 -51.93 -0.23 2.54 16 46 H 0.10 2.01 5.35 -54.24 -0.29 1.72 16 47 H 0.04 0.81 7.68 -51.93 -0.40 0.41 16 48 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.06 1.31 7.20 -51.93 -0.37 0.94 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.04 0.85 6.31 -51.93 -0.33 0.52 16 52 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -33.38 380.64 -8.83 -42.21 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -8.35 Total: 3.67 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.78 Total: -1.02 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.02 Total: -59.43 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.04 Total: -10.06 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.45 Total: 18.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.38 -8.83 -42.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025229294.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.436 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds