Wall clock time and date at job start Wed Apr 1 2020 05:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39670 * 127.32473 * 2 1 4 4 N 1.30865 * 107.86155 * 179.97438 * 3 2 1 5 5 N 1.28445 * 110.92675 * 359.71683 * 4 3 2 6 6 C 1.46499 * 125.19026 * 180.27619 * 5 4 3 7 7 C 1.36594 * 109.61853 * 0.46001 * 5 4 3 8 8 C 1.47169 * 126.88278 * 179.81191 * 7 5 4 9 9 O 1.21630 * 119.99920 * 171.39075 * 8 7 5 10 10 N 1.34775 * 120.00161 * 351.39261 * 8 7 5 11 11 C 1.46926 * 120.62808 * 122.86088 * 10 8 7 12 12 C 1.53189 * 108.77146 * 126.41839 * 11 10 8 13 13 C 1.53039 * 109.31544 * 54.63434 * 12 11 10 14 14 C 1.53040 * 109.53752 * 298.63812 * 13 12 11 15 15 C 1.46922 * 120.63043 * 302.89498 * 10 8 7 16 16 H 1.09002 * 109.59189 * 113.65614 * 15 10 8 17 17 C 1.53001 * 109.58563 * 353.36362 * 15 10 8 18 18 H 1.08998 * 109.86999 * 60.17628 * 17 15 10 19 19 C 1.54320 * 109.88449 * 298.99705 * 17 15 10 20 20 C 1.55161 * 102.94058 * 218.38757 * 19 17 15 21 21 C 1.54691 * 101.67478 * 35.33982 * 20 19 17 22 22 N 1.47027 * 109.87891 * 181.18584 * 17 15 10 23 23 C 1.36931 * 125.65207 * 298.32402 * 22 17 15 24 24 H 1.08001 * 120.00065 * 313.34587 * 23 22 17 25 25 C 1.38817 * 119.99995 * 133.34879 * 23 22 17 26 26 N 1.31617 * 119.99760 * 351.27370 * 25 23 22 27 27 Si 1.86797 * 119.99987 * 171.27705 * 25 23 22 28 28 H 1.48500 * 109.47060 * 84.98212 * 27 25 23 29 29 H 1.48495 * 109.47179 * 324.98442 * 27 25 23 30 30 H 1.48498 * 109.47245 * 204.98065 * 27 25 23 31 31 H 1.09004 * 109.46643 * 273.33479 * 1 2 3 32 32 H 1.09004 * 109.46466 * 33.32532 * 1 2 3 33 33 H 1.08990 * 109.47466 * 153.32983 * 1 2 3 34 34 H 1.07996 * 126.06824 * 359.94957 * 3 2 1 35 35 H 1.09000 * 109.47219 * 276.21171 * 6 5 4 36 36 H 1.09000 * 109.47083 * 36.20981 * 6 5 4 37 37 H 1.09001 * 109.47025 * 156.20847 * 6 5 4 38 38 H 1.09002 * 109.58945 * 246.20060 * 11 10 8 39 39 H 1.09001 * 109.58654 * 6.48782 * 11 10 8 40 40 H 1.08997 * 109.50017 * 174.58892 * 12 11 10 41 41 H 1.09005 * 109.49880 * 294.68041 * 12 11 10 42 42 H 1.09004 * 109.45823 * 58.65430 * 13 12 11 43 43 H 1.08998 * 109.46091 * 178.62697 * 13 12 11 44 44 H 1.09002 * 109.49407 * 301.40844 * 14 13 12 45 45 H 1.09000 * 109.49638 * 181.31800 * 14 13 12 46 46 H 1.08994 * 110.72330 * 336.75498 * 19 17 15 47 47 H 1.09002 * 110.71700 * 100.02932 * 19 17 15 48 48 H 1.09004 * 111.00270 * 153.58092 * 20 19 17 49 49 H 1.09000 * 111.00689 * 277.42598 * 20 19 17 50 50 H 1.09000 * 110.38839 * 204.36177 * 21 20 19 51 51 H 1.08995 * 110.23819 * 82.11286 * 21 20 19 52 52 H 0.97000 * 120.00371 * 4.24706 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1107 0.0000 4 7 3.5878 0.6746 0.0006 5 7 3.6206 -0.6094 0.0068 6 6 4.8390 -1.4228 0.0151 7 6 2.3461 -1.1008 0.0006 8 6 1.9454 -2.5169 0.0007 9 8 0.7768 -2.8182 0.1524 10 7 2.8733 -3.4798 -0.1672 11 6 3.0474 -4.5353 0.8399 12 6 2.9487 -5.8983 0.1476 13 6 3.9556 -5.9555 -1.0035 14 6 3.6240 -4.8681 -2.0281 15 6 3.7304 -3.4935 -1.3604 16 1 4.7641 -3.3050 -1.0702 17 6 3.2665 -2.4114 -2.3376 18 1 3.3313 -1.4320 -1.8638 19 6 1.8141 -2.6900 -2.7783 20 6 1.8251 -2.2977 -4.2795 21 6 3.2447 -2.7385 -4.7077 22 7 4.1024 -2.4382 -3.5468 23 6 5.4528 -2.2152 -3.5887 24 1 5.8778 -1.3736 -3.0620 25 6 6.2756 -3.0710 -4.3082 26 7 5.7888 -4.1880 -4.8060 27 14 8.0736 -2.6374 -4.5698 28 1 8.8671 -3.0887 -3.3985 29 1 8.2108 -1.1668 -4.7237 30 1 8.5723 -3.3120 -5.7951 31 1 -0.3633 0.0598 1.0260 32 1 -0.3632 0.8587 -0.5646 33 1 -0.3634 -0.9182 -0.4612 34 1 2.0453 2.1456 -0.0008 35 1 5.2066 -1.5369 -1.0047 36 1 5.5994 -0.9319 0.6225 37 1 4.6176 -2.4046 0.4336 38 1 4.0257 -4.4343 1.3099 39 1 2.2678 -4.4503 1.5969 40 1 3.1712 -6.6879 0.8652 41 1 1.9406 -6.0354 -0.2438 42 1 4.9610 -5.7937 -0.6148 43 1 3.9044 -6.9333 -1.4824 44 1 2.6096 -5.0150 -2.3989 45 1 4.3273 -4.9245 -2.8589 46 1 1.5699 -3.7453 -2.6573 47 1 1.1156 -2.0652 -2.2216 48 1 1.0610 -2.8447 -4.8319 49 1 1.6996 -1.2221 -4.4032 50 1 3.5723 -2.1704 -5.5784 51 1 3.2588 -3.8068 -4.9236 52 1 4.8424 -4.3838 -4.7235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025260717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:17 Heat of formation + Delta-G solvation = 94.080957 kcal Electronic energy + Delta-G solvation = -34889.260660 eV Core-core repulsion = 30892.212199 eV Total energy + Delta-G solvation = -3997.048461 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.55826 -40.15681 -37.97992 -36.64158 -34.05935 -33.04759 -32.51510 -31.54111 -30.97933 -29.30565 -28.37280 -27.27620 -25.96463 -25.06123 -24.24338 -22.91320 -22.15852 -20.88495 -20.64726 -20.03779 -19.75659 -18.23806 -17.70198 -17.01936 -16.14956 -15.90857 -15.30446 -15.20151 -14.79293 -14.53634 -14.11045 -13.95071 -13.82849 -13.58799 -13.46306 -13.34295 -13.22458 -13.06325 -12.79613 -12.61690 -12.29760 -12.22553 -12.06422 -11.77491 -11.64226 -11.53496 -11.21432 -11.01591 -10.77503 -10.65558 -10.50599 -10.36692 -10.31353 -10.27440 -10.15630 -10.01906 -9.75486 -9.67123 -9.41387 -8.87468 -8.56675 -8.48177 -8.06827 -6.79606 -6.09325 -3.64638 1.33459 2.74907 2.79409 3.10527 3.21281 3.36702 3.42436 3.57060 4.40711 4.60652 4.72044 5.01808 5.09214 5.15689 5.20692 5.23872 5.27020 5.34374 5.37697 5.41458 5.46349 5.55983 5.61527 5.65199 5.69924 5.74346 5.75533 5.84438 5.86270 5.91016 6.02015 6.07410 6.09396 6.15067 6.16885 6.27851 6.34510 6.37134 6.45618 6.48955 6.54805 6.70004 6.75483 6.86232 6.87152 6.95437 6.97342 7.02646 7.18596 7.64379 7.98748 8.01345 8.32017 8.46907 8.86683 9.63635 10.34316 11.08273 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.005700 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.894853 B = 4910.883507 C = 5684.936021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.139 4.139 3 C -0.014 4.014 4 N -0.271 5.271 5 N -0.254 5.254 6 C 0.063 3.937 7 C -0.047 4.047 8 C 0.635 3.365 9 O -0.494 6.494 10 N -0.674 5.674 11 C 0.133 3.867 12 C -0.132 4.132 13 C -0.116 4.116 14 C -0.124 4.124 15 C 0.142 3.858 16 H 0.078 0.922 17 C 0.136 3.864 18 H 0.050 0.950 19 C -0.134 4.134 20 C -0.135 4.135 21 C 0.134 3.866 22 N -0.581 5.581 23 C -0.340 4.340 24 H 0.047 0.953 25 C -0.004 4.004 26 N -0.910 5.910 27 Si 1.071 2.929 28 H -0.290 1.290 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.181 0.819 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.101 0.899 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.059 0.941 50 H 0.043 0.957 51 H 0.030 0.970 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.997 1.625 10.294 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.151 4.151 3 C -0.189 4.189 4 N -0.104 5.104 5 N -0.043 5.043 6 C -0.077 4.077 7 C -0.175 4.175 8 C 0.424 3.576 9 O -0.365 6.365 10 N -0.414 5.414 11 C 0.010 3.990 12 C -0.171 4.171 13 C -0.154 4.154 14 C -0.162 4.162 15 C 0.039 3.961 16 H 0.096 0.904 17 C 0.029 3.971 18 H 0.067 0.933 19 C -0.172 4.172 20 C -0.173 4.173 21 C 0.009 3.991 22 N -0.307 5.307 23 C -0.469 4.469 24 H 0.065 0.935 25 C -0.209 4.209 26 N -0.549 5.549 27 Si 0.900 3.100 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.211 1.211 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.198 0.802 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.119 0.881 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.061 0.939 51 H 0.047 0.953 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.883 1.172 9.701 10.515 hybrid contribution -2.032 0.294 0.559 2.128 sum -5.915 1.465 10.260 11.933 Atomic orbital electron populations 1.20166 0.88472 1.02921 1.01853 1.20755 0.96929 0.90923 1.06454 1.23380 0.87984 0.99752 1.07832 1.73125 1.24424 0.93938 1.18956 1.45607 1.06129 1.03491 1.49068 1.23057 0.83174 0.94677 1.06802 1.21763 0.85497 0.95537 1.14677 1.16815 0.84516 0.83028 0.73222 1.90708 1.18286 1.83334 1.44154 1.47717 1.41360 1.28167 1.24143 1.21400 1.00713 0.86962 0.89878 1.21915 1.00561 0.96319 0.98282 1.21488 0.98471 0.99252 0.96157 1.21982 1.02602 0.92753 0.98898 1.22066 0.93610 0.97536 0.82925 0.90444 1.21669 0.90481 0.95151 0.89788 0.93297 1.22762 0.96502 1.01252 0.96638 1.22723 0.98526 1.00333 0.95727 1.21696 0.88193 0.97578 0.91620 1.44227 1.03720 1.83986 0.98745 1.19515 0.80875 1.09902 1.36634 0.93550 1.26309 1.05124 0.92424 0.97049 1.70772 1.16888 1.21540 1.45716 0.83425 0.74588 0.75212 0.76796 1.21682 1.21650 1.21069 0.91593 0.91758 0.90626 0.80154 0.86778 0.89601 0.87715 0.92147 0.90961 0.91648 0.91630 0.92175 0.92298 0.92505 0.88105 0.91115 0.92298 0.92197 0.92232 0.93891 0.95254 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.94 36.01 0.36 -0.65 16 2 C -0.14 -2.19 6.29 -104.02 -0.65 -2.85 16 3 C -0.01 -0.21 12.00 -17.43 -0.21 -0.42 16 4 N -0.27 -4.64 11.90 30.59 0.36 -4.28 16 5 N -0.25 -4.29 2.73 -63.88 -0.17 -4.47 16 6 C 0.06 0.96 8.55 59.85 0.51 1.47 16 7 C -0.05 -0.80 4.64 -82.06 -0.38 -1.18 16 8 C 0.63 10.89 3.77 -12.64 -0.05 10.84 16 9 O -0.49 -9.14 15.47 5.25 0.08 -9.06 16 10 N -0.67 -10.69 1.50 -166.58 -0.25 -10.94 16 11 C 0.13 1.75 6.20 -3.71 -0.02 1.73 16 12 C -0.13 -1.71 6.08 -26.61 -0.16 -1.87 16 13 C -0.12 -1.74 5.88 -26.69 -0.16 -1.90 16 14 C -0.12 -2.28 4.95 -26.61 -0.13 -2.41 16 15 C 0.14 2.54 1.21 -67.60 -0.08 2.46 16 16 H 0.08 1.46 5.14 -51.93 -0.27 1.19 16 17 C 0.14 2.72 1.53 -66.95 -0.10 2.61 16 18 H 0.05 1.04 3.79 -51.93 -0.20 0.84 16 19 C -0.13 -2.55 4.89 -24.90 -0.12 -2.67 16 20 C -0.13 -2.54 7.07 -24.70 -0.17 -2.72 16 21 C 0.13 2.98 6.04 -2.65 -0.02 2.96 16 22 N -0.58 -13.39 2.12 -162.71 -0.34 -13.74 16 23 C -0.34 -8.58 8.90 -15.06 -0.13 -8.72 16 24 H 0.05 1.21 7.20 -52.49 -0.38 0.83 16 25 C 0.00 -0.09 5.38 -17.43 -0.09 -0.19 16 26 N -0.91 -24.85 13.17 55.49 0.73 -24.12 16 27 Si 1.07 23.51 29.93 -169.99 -5.09 18.42 16 28 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 30 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.12 6.70 -51.93 -0.35 0.77 16 34 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.11 2.07 4.70 -51.93 -0.24 1.83 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.10 1.50 4.62 -51.93 -0.24 1.26 16 38 H 0.06 0.70 7.89 -51.93 -0.41 0.29 16 39 H 0.07 0.91 7.86 -51.93 -0.41 0.51 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.08 5.84 -51.93 -0.30 0.77 16 45 H 0.10 2.24 6.09 -51.93 -0.32 1.92 16 46 H 0.07 1.37 5.60 -51.93 -0.29 1.08 16 47 H 0.06 1.13 6.50 -51.93 -0.34 0.79 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.03 0.69 6.38 -51.93 -0.33 0.36 16 52 H 0.28 7.47 4.05 -40.82 -0.17 7.30 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -28.93 373.32 -8.36 -37.29 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.68 Total: 8.76 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.62 Total: -3.49 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.33 Total: -57.54 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -5.09 Total: 18.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.93 -8.36 -37.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025260717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.368 kcal (2) G-P(sol) polarization free energy of solvation -28.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds