Wall clock time and date at job start Wed Apr 1 2020 05:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39670 * 127.32473 * 2 1 4 4 N 1.30865 * 107.86155 * 179.97438 * 3 2 1 5 5 N 1.28445 * 110.92675 * 359.71683 * 4 3 2 6 6 C 1.46499 * 125.19026 * 180.27619 * 5 4 3 7 7 C 1.36594 * 109.61853 * 0.46001 * 5 4 3 8 8 C 1.47169 * 126.88278 * 179.81191 * 7 5 4 9 9 O 1.21630 * 119.99920 * 171.39075 * 8 7 5 10 10 N 1.34775 * 120.00161 * 351.39261 * 8 7 5 11 11 C 1.46926 * 120.62808 * 122.86088 * 10 8 7 12 12 C 1.53189 * 108.77146 * 126.41839 * 11 10 8 13 13 C 1.53039 * 109.31544 * 54.63434 * 12 11 10 14 14 C 1.53040 * 109.53752 * 298.63812 * 13 12 11 15 15 C 1.46922 * 120.63043 * 302.89498 * 10 8 7 16 16 H 1.09002 * 109.59189 * 113.65614 * 15 10 8 17 17 C 1.53001 * 109.58563 * 353.36362 * 15 10 8 18 18 H 1.08998 * 109.86999 * 60.17628 * 17 15 10 19 19 C 1.54320 * 109.88449 * 298.99705 * 17 15 10 20 20 C 1.55161 * 102.94058 * 218.38757 * 19 17 15 21 21 C 1.54691 * 101.67478 * 35.33982 * 20 19 17 22 22 N 1.47027 * 109.87891 * 181.18584 * 17 15 10 23 23 C 1.36931 * 125.65207 * 298.32402 * 22 17 15 24 24 H 1.08001 * 120.00065 * 313.34587 * 23 22 17 25 25 C 1.38817 * 119.99995 * 133.34879 * 23 22 17 26 26 N 1.31617 * 119.99760 * 351.27370 * 25 23 22 27 27 Si 1.86797 * 119.99987 * 171.27705 * 25 23 22 28 28 H 1.48500 * 109.47060 * 84.98212 * 27 25 23 29 29 H 1.48495 * 109.47179 * 324.98442 * 27 25 23 30 30 H 1.48498 * 109.47245 * 204.98065 * 27 25 23 31 31 H 1.09004 * 109.46643 * 273.33479 * 1 2 3 32 32 H 1.09004 * 109.46466 * 33.32532 * 1 2 3 33 33 H 1.08990 * 109.47466 * 153.32983 * 1 2 3 34 34 H 1.07996 * 126.06824 * 359.94957 * 3 2 1 35 35 H 1.09000 * 109.47219 * 276.21171 * 6 5 4 36 36 H 1.09000 * 109.47083 * 36.20981 * 6 5 4 37 37 H 1.09001 * 109.47025 * 156.20847 * 6 5 4 38 38 H 1.09002 * 109.58945 * 246.20060 * 11 10 8 39 39 H 1.09001 * 109.58654 * 6.48782 * 11 10 8 40 40 H 1.08997 * 109.50017 * 174.58892 * 12 11 10 41 41 H 1.09005 * 109.49880 * 294.68041 * 12 11 10 42 42 H 1.09004 * 109.45823 * 58.65430 * 13 12 11 43 43 H 1.08998 * 109.46091 * 178.62697 * 13 12 11 44 44 H 1.09002 * 109.49407 * 301.40844 * 14 13 12 45 45 H 1.09000 * 109.49638 * 181.31800 * 14 13 12 46 46 H 1.08994 * 110.72330 * 336.75498 * 19 17 15 47 47 H 1.09002 * 110.71700 * 100.02932 * 19 17 15 48 48 H 1.09004 * 111.00270 * 153.58092 * 20 19 17 49 49 H 1.09000 * 111.00689 * 277.42598 * 20 19 17 50 50 H 1.09000 * 110.38839 * 204.36177 * 21 20 19 51 51 H 1.08995 * 110.23819 * 82.11286 * 21 20 19 52 52 H 0.97000 * 120.00371 * 4.24706 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1107 0.0000 4 7 3.5878 0.6746 0.0006 5 7 3.6206 -0.6094 0.0068 6 6 4.8390 -1.4228 0.0151 7 6 2.3461 -1.1008 0.0006 8 6 1.9454 -2.5169 0.0007 9 8 0.7768 -2.8182 0.1524 10 7 2.8733 -3.4798 -0.1672 11 6 3.0474 -4.5353 0.8399 12 6 2.9487 -5.8983 0.1476 13 6 3.9556 -5.9555 -1.0035 14 6 3.6240 -4.8681 -2.0281 15 6 3.7304 -3.4935 -1.3604 16 1 4.7641 -3.3050 -1.0702 17 6 3.2665 -2.4114 -2.3376 18 1 3.3313 -1.4320 -1.8638 19 6 1.8141 -2.6900 -2.7783 20 6 1.8251 -2.2977 -4.2795 21 6 3.2447 -2.7385 -4.7077 22 7 4.1024 -2.4382 -3.5468 23 6 5.4528 -2.2152 -3.5887 24 1 5.8778 -1.3736 -3.0620 25 6 6.2756 -3.0710 -4.3082 26 7 5.7888 -4.1880 -4.8060 27 14 8.0736 -2.6374 -4.5698 28 1 8.8671 -3.0887 -3.3985 29 1 8.2108 -1.1668 -4.7237 30 1 8.5723 -3.3120 -5.7951 31 1 -0.3633 0.0598 1.0260 32 1 -0.3632 0.8587 -0.5646 33 1 -0.3634 -0.9182 -0.4612 34 1 2.0453 2.1456 -0.0008 35 1 5.2066 -1.5369 -1.0047 36 1 5.5994 -0.9319 0.6225 37 1 4.6176 -2.4046 0.4336 38 1 4.0257 -4.4343 1.3099 39 1 2.2678 -4.4503 1.5969 40 1 3.1712 -6.6879 0.8652 41 1 1.9406 -6.0354 -0.2438 42 1 4.9610 -5.7937 -0.6148 43 1 3.9044 -6.9333 -1.4824 44 1 2.6096 -5.0150 -2.3989 45 1 4.3273 -4.9245 -2.8589 46 1 1.5699 -3.7453 -2.6573 47 1 1.1156 -2.0652 -2.2216 48 1 1.0610 -2.8447 -4.8319 49 1 1.6996 -1.2221 -4.4032 50 1 3.5723 -2.1704 -5.5784 51 1 3.2588 -3.8068 -4.9236 52 1 4.8424 -4.3838 -4.7235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025260717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:14 Heat of formation + Delta-G solvation = 79.899580 kcal Electronic energy + Delta-G solvation = -34889.875611 eV Core-core repulsion = 30892.212199 eV Total energy + Delta-G solvation = -3997.663412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -43.81063 -41.53087 -39.50776 -38.06900 -35.29348 -34.81207 -33.87956 -32.85394 -32.28784 -31.09725 -29.59098 -28.82033 -27.14012 -26.56556 -25.89638 -24.34385 -23.44790 -22.34310 -21.91594 -21.55421 -21.25820 -19.68913 -19.30229 -18.40205 -17.58472 -17.24311 -16.70050 -16.54587 -16.22903 -16.13769 -15.67715 -15.37186 -15.24429 -15.02074 -14.91889 -14.73222 -14.40722 -14.35531 -14.06094 -13.94052 -13.53439 -13.50385 -13.33442 -13.29206 -13.09862 -12.94471 -12.74706 -12.53984 -12.49865 -12.04339 -12.00145 -11.91953 -11.76650 -11.73869 -11.58553 -11.41146 -11.37478 -11.23883 -11.04822 -10.51315 -10.13606 -9.71788 -9.35845 -8.74549 -8.06623 -5.65169 0.04094 1.53667 1.56867 1.58538 1.65685 1.80050 1.82305 1.96849 2.60452 3.25495 3.31547 3.54264 3.62380 3.70143 3.78807 3.90340 3.99656 4.00588 4.04293 4.11258 4.19367 4.20785 4.26097 4.35948 4.39058 4.42819 4.52825 4.53970 4.59563 4.62521 4.65708 4.75144 4.83049 4.88079 4.89117 4.93010 5.02133 5.03575 5.05615 5.09474 5.16751 5.23750 5.26067 5.30332 5.38518 5.47421 5.62403 5.73774 5.85041 5.95634 6.29950 6.50502 6.71399 6.97017 7.08185 7.68339 8.41872 9.06605 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.005700 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.894853 B = 4910.883507 C = 5684.936021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.143 4.143 3 C -0.010 4.010 4 N -0.294 5.294 5 N -0.262 5.262 6 C 0.067 3.933 7 C -0.069 4.069 8 C 0.636 3.364 9 O -0.510 6.510 10 N -0.671 5.671 11 C 0.126 3.874 12 C -0.122 4.122 13 C -0.112 4.112 14 C -0.119 4.119 15 C 0.159 3.841 16 H 0.069 0.931 17 C 0.140 3.860 18 H 0.043 0.957 19 C -0.123 4.123 20 C -0.123 4.123 21 C 0.137 3.863 22 N -0.595 5.595 23 C -0.339 4.339 24 H 0.037 0.963 25 C -0.044 4.044 26 N -0.936 5.936 27 Si 1.112 2.888 28 H -0.273 1.273 29 H -0.282 1.282 30 H -0.294 1.294 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.215 0.785 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.084 0.916 49 H 0.063 0.937 50 H 0.021 0.979 51 H 0.012 0.988 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.614 2.143 12.187 14.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.155 4.155 3 C -0.186 4.186 4 N -0.128 5.128 5 N -0.051 5.051 6 C -0.073 4.073 7 C -0.196 4.196 8 C 0.426 3.574 9 O -0.382 6.382 10 N -0.411 5.411 11 C 0.005 3.995 12 C -0.160 4.160 13 C -0.149 4.149 14 C -0.157 4.157 15 C 0.055 3.945 16 H 0.086 0.914 17 C 0.033 3.967 18 H 0.061 0.939 19 C -0.161 4.161 20 C -0.161 4.161 21 C 0.011 3.989 22 N -0.320 5.320 23 C -0.468 4.468 24 H 0.055 0.945 25 C -0.245 4.245 26 N -0.577 5.577 27 Si 0.937 3.063 28 H -0.199 1.199 29 H -0.207 1.207 30 H -0.220 1.220 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.232 0.768 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.102 0.898 49 H 0.081 0.919 50 H 0.039 0.961 51 H 0.030 0.970 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.510 1.688 11.628 12.585 hybrid contribution -1.909 0.209 -0.026 1.921 sum -6.419 1.897 11.602 13.394 Atomic orbital electron populations 1.20212 0.86754 1.03043 1.03019 1.21207 0.98189 0.90700 1.05363 1.23980 0.87141 1.01185 1.06266 1.73106 1.25691 0.94169 1.19801 1.45672 1.06283 1.03543 1.49609 1.22973 0.83541 0.95475 1.05280 1.21951 0.86011 0.95888 1.15786 1.16884 0.84370 0.83301 0.72808 1.90700 1.18735 1.83577 1.45211 1.47653 1.40605 1.28898 1.23917 1.21691 1.02367 0.86097 0.89382 1.21844 0.99056 0.97236 0.97880 1.21449 0.99350 0.98015 0.96102 1.21840 1.00738 0.94406 0.98744 1.21638 0.93259 0.96371 0.83262 0.91354 1.21625 0.90417 0.95605 0.89039 0.93930 1.22654 0.95881 1.00978 0.96573 1.22656 0.96902 1.00778 0.95791 1.21589 0.90137 0.96215 0.90913 1.44327 1.03538 1.84010 1.00163 1.19576 0.82027 1.09281 1.35898 0.94521 1.27357 1.08127 0.92061 0.96920 1.70841 1.16636 1.22774 1.47447 0.82878 0.71318 0.75320 0.76809 1.19875 1.20746 1.21978 0.90098 0.89393 0.92379 0.76847 0.89826 0.87549 0.86853 0.89921 0.89893 0.88358 0.92730 0.91871 0.91934 0.93551 0.92046 0.91481 0.92031 0.89751 0.91871 0.96086 0.97005 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 9.94 71.24 0.71 -1.04 16 2 C -0.14 -4.24 6.29 -19.48 -0.12 -4.36 16 3 C -0.01 -0.29 12.00 85.18 1.02 0.74 16 4 N -0.29 -9.72 11.90 -57.14 -0.68 -10.40 16 5 N -0.26 -8.64 2.73 -356.01 -0.97 -9.61 16 6 C 0.07 2.03 8.55 127.77 1.09 3.12 16 7 C -0.07 -2.28 4.64 40.79 0.19 -2.09 16 8 C 0.64 21.14 3.77 86.59 0.33 21.47 16 9 O -0.51 -18.27 15.47 -4.13 -0.06 -18.33 16 10 N -0.67 -20.60 1.50 -799.17 -1.20 -21.80 16 11 C 0.13 3.02 6.20 86.36 0.54 3.55 16 12 C -0.12 -2.86 6.08 30.67 0.19 -2.67 16 13 C -0.11 -3.25 5.88 30.62 0.18 -3.07 16 14 C -0.12 -4.43 4.95 30.67 0.15 -4.28 16 15 C 0.16 5.69 1.21 44.98 0.05 5.74 16 16 H 0.07 2.61 5.14 -2.39 -0.01 2.59 16 17 C 0.14 5.63 1.53 45.34 0.07 5.70 16 18 H 0.04 1.82 3.79 -2.39 -0.01 1.81 16 19 C -0.12 -4.67 4.89 31.78 0.16 -4.51 16 20 C -0.12 -4.62 7.07 31.91 0.23 -4.39 16 21 C 0.14 6.27 6.04 86.78 0.52 6.79 16 22 N -0.59 -28.18 2.12 -668.69 -1.41 -29.59 16 23 C -0.34 -17.52 8.90 84.04 0.75 -16.77 16 24 H 0.04 1.96 7.20 -2.91 -0.02 1.94 16 25 C -0.04 -2.33 5.38 84.86 0.46 -1.88 16 26 N -0.94 -52.77 13.17 21.65 0.29 -52.48 16 27 Si 1.11 47.99 29.93 68.60 2.05 50.04 16 28 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 29 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 30 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 31 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.62 6.70 -2.39 -0.02 1.60 16 34 H 0.21 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.08 3.09 4.70 -2.39 -0.01 3.08 16 36 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.11 3.15 4.62 -2.39 -0.01 3.14 16 38 H 0.08 1.65 7.89 -2.39 -0.02 1.64 16 39 H 0.08 1.87 7.86 -2.39 -0.02 1.85 16 40 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.05 1.79 5.84 -2.39 -0.01 1.78 16 45 H 0.06 2.83 6.09 -2.39 -0.01 2.81 16 46 H 0.07 2.60 5.60 -2.39 -0.01 2.58 16 47 H 0.06 2.31 6.50 -2.39 -0.02 2.30 16 48 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 49 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 51 H 0.01 0.60 6.38 -2.39 -0.02 0.58 16 52 H 0.27 15.18 4.05 -92.71 -0.38 14.80 16 Total: -1.00 -64.03 373.32 5.84 -58.18 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 1.34 Total: 31.94 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 6.50 Total: 2.05 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -3.99 Total: -123.89 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.06 Total: -18.33 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.05 Total: 50.04 kcal Total: -64.03 5.84 -58.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025260717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.083 kcal (2) G-P(sol) polarization free energy of solvation -64.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds