Wall clock time and date at job start Wed Apr 1 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31888 * 118.94988 * 2 1 4 4 C 1.32134 * 120.96483 * 179.67990 * 3 2 1 5 5 C 1.39969 * 118.92554 * 0.61278 * 4 3 2 6 6 C 1.47832 * 120.94231 * 179.69865 * 5 4 3 7 7 O 1.21548 * 119.99798 * 234.05507 * 6 5 4 8 8 N 1.34775 * 120.00161 * 54.05558 * 6 5 4 9 9 C 1.46931 * 120.62749 * 355.96446 * 8 6 5 10 10 C 1.53191 * 108.77386 * 126.39454 * 9 8 6 11 11 C 1.53044 * 109.31502 * 54.63005 * 10 9 8 12 12 H 1.08996 * 109.45896 * 178.61308 * 11 10 9 13 13 N 1.46503 * 109.45687 * 58.65745 * 11 10 9 14 14 C 1.36929 * 119.99841 * 84.93314 * 13 11 10 15 15 H 1.08001 * 120.00399 * 359.97438 * 14 13 11 16 16 C 1.38816 * 119.99909 * 179.97438 * 14 13 11 17 17 N 1.31625 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00248 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46836 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47108 * 120.00003 * 18 16 14 21 21 H 1.48499 * 109.47342 * 240.00315 * 18 16 14 22 22 C 1.53032 * 109.53756 * 298.63445 * 11 10 9 23 23 H 1.08998 * 109.53176 * 301.39787 * 22 11 10 24 24 C 1.52997 * 109.49868 * 181.31375 * 22 11 10 25 25 C 1.46923 * 120.63150 * 175.96196 * 8 6 5 26 26 C 1.39931 * 118.11779 * 359.42749 * 5 4 3 27 27 C 1.50697 * 120.53891 * 180.29686 * 26 5 4 28 28 C 1.52995 * 109.47395 * 125.19416 * 27 26 5 29 29 C 1.53000 * 109.47158 * 245.19409 * 27 26 5 30 30 N 1.31856 * 118.95647 * 180.02562 * 2 1 3 31 31 H 1.08991 * 109.47146 * 269.97803 * 1 2 3 32 32 H 1.09003 * 109.47289 * 29.97783 * 1 2 3 33 33 H 1.09001 * 109.46721 * 149.97190 * 1 2 3 34 34 H 1.08006 * 120.53976 * 180.30939 * 4 3 2 35 35 H 1.08998 * 109.58838 * 6.60187 * 9 8 6 36 36 H 1.08997 * 109.69955 * 246.24730 * 9 8 6 37 37 H 1.09004 * 109.49667 * 294.67709 * 10 9 8 38 38 H 1.08993 * 109.50081 * 174.58504 * 10 9 8 39 39 H 0.97003 * 119.99491 * 264.92801 * 13 11 10 40 40 H 0.97001 * 119.99447 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.47134 * 300.16615 * 24 22 11 42 42 H 1.09005 * 109.46846 * 60.16517 * 24 22 11 43 43 H 1.09001 * 109.47928 * 180.16426 * 24 22 11 44 44 H 1.09008 * 109.58448 * 113.81836 * 25 8 6 45 45 H 1.08997 * 109.58441 * 353.40130 * 25 8 6 46 46 H 1.09002 * 109.46949 * 5.19188 * 27 26 5 47 47 H 1.09002 * 109.47258 * 59.99962 * 28 27 26 48 48 H 1.09002 * 109.47634 * 180.02562 * 28 27 26 49 49 H 1.09003 * 109.47050 * 299.99500 * 28 27 26 50 50 H 1.09004 * 109.47152 * 59.99565 * 29 27 26 51 51 H 1.08997 * 109.47322 * 179.97438 * 29 27 26 52 52 H 1.09002 * 109.47010 * 299.99741 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4659 1.2005 0.0063 5 6 4.1856 0.0001 0.0000 6 6 5.6639 0.0001 0.0000 7 8 6.2716 -0.6133 -0.8555 8 7 6.3378 0.6802 0.9485 9 6 5.6199 1.4977 1.9360 10 6 6.0568 1.0708 3.3408 11 6 7.5815 1.1550 3.4441 12 1 7.8932 0.8753 4.4504 13 7 8.0147 2.5259 3.1627 14 6 8.0250 3.4598 4.1640 15 1 7.7134 3.1860 5.1611 16 6 8.4360 4.7587 3.8974 17 7 8.8153 5.0925 2.6820 18 14 8.4494 6.0330 5.2631 19 1 7.9795 5.4096 6.5264 20 1 9.8307 6.5463 5.4476 21 1 7.5482 7.1563 4.9010 22 6 8.2166 0.2011 2.4300 23 1 7.8757 -0.8160 2.6233 24 6 9.7401 0.2617 2.5565 25 6 7.8042 0.6182 1.0148 26 6 3.4662 -1.2001 -0.0005 27 6 4.1857 -2.5242 -0.0005 28 6 3.6984 -3.3695 1.1779 29 6 3.8980 -3.2611 -1.3101 30 7 2.1454 -1.1537 -0.0005 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5143 34 1 3.9816 2.1495 0.0113 35 1 4.5463 1.3456 1.8251 36 1 5.8573 2.5506 1.7837 37 1 5.7357 0.0457 3.5258 38 1 5.6050 1.7328 4.0793 39 1 8.2943 2.7718 2.2670 40 1 9.1021 6.0002 2.4956 41 1 10.0805 1.2792 2.3642 42 1 10.0331 -0.0352 3.5636 43 1 10.1923 -0.4157 1.8321 44 1 8.2221 1.5988 0.7864 45 1 8.1718 -0.1142 0.2961 46 1 5.2584 -2.3547 0.0930 47 1 2.6257 -3.5390 1.0845 48 1 4.2192 -4.3271 1.1783 49 1 3.9034 -2.8446 2.1110 50 1 4.2452 -2.6588 -2.1497 51 1 4.4188 -4.2186 -1.3103 52 1 2.8253 -3.4305 -1.4036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036201213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:35 Heat of formation + Delta-G solvation = 13.886265 kcal Electronic energy + Delta-G solvation = -32239.880448 eV Core-core repulsion = 28239.354484 eV Total energy + Delta-G solvation = -4000.525964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.64368 -39.83636 -37.83934 -36.28514 -34.52908 -33.67879 -32.82117 -32.23577 -31.48383 -29.33143 -29.13708 -27.28961 -26.37389 -25.22577 -25.03405 -23.65878 -23.16764 -21.75043 -20.91327 -20.12752 -18.47656 -18.05370 -17.38914 -17.03406 -16.24443 -16.08996 -15.40644 -15.08304 -14.88151 -14.46222 -14.40435 -14.07430 -14.03512 -13.79514 -13.53262 -13.45441 -13.34801 -12.94873 -12.72288 -12.65793 -12.59167 -12.33194 -12.23914 -11.80438 -11.69779 -11.68098 -11.48265 -11.41644 -11.23965 -11.01975 -10.96239 -10.85074 -10.72022 -10.56663 -10.45216 -10.20561 -9.91173 -9.82915 -9.61482 -9.41801 -9.39204 -8.98783 -8.36372 -7.03710 -5.84356 -3.13088 0.44008 0.86142 2.61423 3.05011 3.38067 3.44577 3.46428 3.49335 3.64108 3.83462 4.12734 4.40562 4.53000 4.69525 4.92339 4.92595 4.97799 5.08818 5.13773 5.22932 5.28736 5.29034 5.30850 5.43891 5.51048 5.51326 5.53576 5.61975 5.65112 5.69364 5.72738 5.77796 5.83901 5.85431 5.97473 5.99461 6.08603 6.09338 6.15319 6.22284 6.24635 6.31602 6.42443 6.52245 6.60353 6.68188 6.75577 6.84469 6.91824 7.51268 7.64580 7.86944 8.15217 8.33982 9.46006 10.01531 10.36738 11.37943 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.003321 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.743829 B = 8430.265550 C = 9617.123649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.328 3.672 3 N -0.522 5.522 4 C 0.188 3.812 5 C -0.234 4.234 6 C 0.568 3.432 7 O -0.537 6.537 8 N -0.589 5.589 9 C 0.108 3.892 10 C -0.149 4.149 11 C 0.179 3.821 12 H 0.052 0.948 13 N -0.718 5.718 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.010 4.010 17 N -0.931 5.931 18 Si 0.903 3.097 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.108 4.108 23 H 0.066 0.934 24 C -0.137 4.137 25 C 0.119 3.881 26 C 0.233 3.767 27 C -0.054 4.054 28 C -0.139 4.139 29 C -0.134 4.134 30 N -0.515 5.515 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.176 0.824 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.064 0.936 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.090 -14.829 -4.920 19.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.062 3.938 3 N -0.236 5.236 4 C 0.021 3.979 5 C -0.241 4.241 6 C 0.354 3.646 7 O -0.415 6.415 8 N -0.320 5.320 9 C -0.014 4.014 10 C -0.190 4.190 11 C 0.069 3.931 12 H 0.070 0.930 13 N -0.361 5.361 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.735 3.265 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.128 4.128 23 H 0.084 0.916 24 C -0.195 4.195 25 C -0.002 4.002 26 C 0.086 3.914 27 C -0.073 4.073 28 C -0.197 4.197 29 C -0.192 4.192 30 N -0.229 5.229 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.193 0.807 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.117 0.883 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.083 0.917 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.772 -15.026 -5.205 20.396 hybrid contribution 1.005 1.207 0.597 1.681 sum -11.766 -13.819 -4.608 18.726 Atomic orbital electron populations 1.20599 0.85450 1.04272 1.04069 1.23451 0.98353 0.83364 0.88636 1.68316 1.09533 1.30025 1.15740 1.23544 0.89427 0.97834 0.87078 1.21601 0.96434 0.96452 1.09635 1.17772 0.85735 0.79324 0.81794 1.90767 1.69132 1.44508 1.37105 1.48074 1.07813 1.46437 1.29703 1.21929 0.94813 0.96205 0.88467 1.22524 1.01049 0.99747 0.95680 1.20207 0.90392 0.86367 0.96179 0.92998 1.42480 1.78412 1.04386 1.10813 1.19253 1.36972 0.89922 0.90830 0.91201 1.24701 1.02043 0.97449 0.96452 1.69656 1.50702 1.18849 1.18732 0.86177 0.77194 0.81902 0.81242 1.20638 1.21944 1.21942 1.21709 0.96813 0.99201 0.95095 0.91585 1.21666 0.93969 1.02898 1.00971 1.21731 0.77919 1.02956 0.97626 1.21727 0.88947 0.94590 0.86181 1.20326 0.99898 0.89478 0.97614 1.21779 1.02212 0.99223 0.96479 1.21700 1.02089 0.99880 0.95491 1.68079 1.08937 1.29981 1.15897 0.89357 0.89422 0.89530 0.80701 0.91612 0.89104 0.93403 0.90626 0.78092 0.93537 0.90959 0.92734 0.93690 0.90236 0.89535 0.88318 0.91430 0.91754 0.92858 0.92365 0.91723 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 10.31 36.00 0.37 -0.32 16 2 C 0.33 3.99 7.64 -157.06 -1.20 2.79 16 3 N -0.52 -6.95 10.32 -10.39 -0.11 -7.06 16 4 C 0.19 2.53 8.75 -16.77 -0.15 2.39 16 5 C -0.23 -3.33 4.90 -104.69 -0.51 -3.84 16 6 C 0.57 8.92 6.32 -12.34 -0.08 8.85 16 7 O -0.54 -9.56 15.08 5.32 0.08 -9.48 16 8 N -0.59 -9.13 2.97 -173.89 -0.52 -9.65 16 9 C 0.11 1.67 5.33 -3.71 -0.02 1.65 16 10 C -0.15 -2.39 5.78 -26.61 -0.15 -2.54 16 11 C 0.18 3.19 2.53 -67.89 -0.17 3.02 16 12 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 13 N -0.72 -15.88 3.64 -53.39 -0.19 -16.08 16 14 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 15 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -26.42 13.06 55.49 0.72 -25.69 16 18 Si 0.90 21.42 29.55 -169.99 -5.02 16.40 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C -0.11 -1.68 2.67 -90.50 -0.24 -1.92 16 23 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 24 C -0.14 -2.09 9.05 37.16 0.34 -1.76 16 25 C 0.12 1.91 5.41 -3.71 -0.02 1.89 16 26 C 0.23 3.12 5.52 -81.82 -0.45 2.67 16 27 C -0.05 -0.65 2.91 -91.78 -0.27 -0.91 16 28 C -0.14 -1.40 9.06 37.15 0.34 -1.07 16 29 C -0.13 -1.42 9.15 37.16 0.34 -1.08 16 30 N -0.51 -6.57 9.88 -6.67 -0.07 -6.63 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.18 2.16 7.43 -52.48 -0.39 1.77 16 35 H 0.07 0.93 4.74 -51.93 -0.25 0.68 16 36 H 0.09 1.62 7.74 -51.93 -0.40 1.22 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.38 9.09 5.92 -40.82 -0.24 8.85 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.07 1.29 7.53 -51.93 -0.39 0.90 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 1.41 6.64 -51.92 -0.34 1.06 16 45 H 0.09 1.36 7.03 -51.93 -0.36 1.00 16 46 H 0.10 1.34 5.78 -51.93 -0.30 1.04 16 47 H 0.07 0.67 7.98 -51.93 -0.41 0.26 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 407.43 15.07 6.14 6.14 Total: -1.00 -29.44 407.43 -9.64 -39.08 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -8.56 Total: 9.74 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.12 Total: 3.23 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.16 Total: -65.11 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -29.44 -9.64 -39.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036201213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.967 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds