Wall clock time and date at job start Wed Apr 1 2020 04:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30858 * 125.41786 * 2 1 4 4 C 1.33320 * 109.68598 * 179.77370 * 3 2 1 5 5 C 1.50702 * 126.10674 * 180.27655 * 4 3 2 6 6 C 1.36658 * 107.78462 * 0.40300 * 4 3 2 7 7 C 1.46768 * 126.84739 * 179.87759 * 6 4 3 8 8 O 1.21684 * 119.99641 * 317.31254 * 7 6 4 9 9 N 1.34771 * 120.00601 * 137.03367 * 7 6 4 10 10 C 1.46927 * 120.62580 * 352.76867 * 9 7 6 11 11 C 1.53193 * 108.77419 * 233.58089 * 10 9 7 12 12 C 1.53041 * 109.31441 * 305.36781 * 11 10 9 13 13 C 1.53035 * 109.53618 * 61.36556 * 12 11 10 14 14 C 1.46921 * 120.63439 * 172.48447 * 9 7 6 15 15 H 1.08990 * 109.58975 * 246.20354 * 14 9 7 16 16 C 1.53002 * 109.58633 * 6.63038 * 14 9 7 17 17 H 1.09003 * 110.88281 * 46.14968 * 16 14 9 18 18 C 1.55154 * 111.00421 * 282.22959 * 16 14 9 19 19 C 1.54320 * 102.93978 * 206.42444 * 18 16 14 20 20 N 1.47022 * 107.27458 * 22.18689 * 19 18 16 21 21 C 1.36938 * 125.64557 * 181.02389 * 20 19 18 22 22 H 1.08006 * 119.99540 * 180.02562 * 21 20 19 23 23 C 1.38805 * 120.00491 * 0.04228 * 21 20 19 24 24 N 1.31623 * 119.99877 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00285 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46779 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46963 * 119.99970 * 25 23 21 28 28 H 1.48499 * 109.47353 * 240.00407 * 25 23 21 29 29 C 1.47422 * 108.69975 * 1.06453 * 20 19 18 30 30 N 1.34491 * 125.42193 * 180.02562 * 2 1 3 31 31 H 0.97001 * 126.47088 * 359.96104 * 30 2 1 32 32 H 1.09004 * 109.47321 * 269.97502 * 1 2 3 33 33 H 1.08999 * 109.47622 * 29.97188 * 1 2 3 34 34 H 1.08995 * 109.47401 * 149.97535 * 1 2 3 35 35 H 1.08996 * 109.47064 * 270.14812 * 5 4 3 36 36 H 1.09000 * 109.47229 * 30.15204 * 5 4 3 37 37 H 1.09004 * 109.46940 * 150.15126 * 5 4 3 38 38 H 1.08996 * 109.59381 * 353.36942 * 10 9 7 39 39 H 1.08994 * 109.58850 * 113.65590 * 10 9 7 40 40 H 1.09004 * 109.49888 * 65.32048 * 11 10 9 41 41 H 1.09006 * 109.49817 * 185.41166 * 11 10 9 42 42 H 1.09003 * 109.46116 * 181.38168 * 12 11 10 43 43 H 1.08996 * 109.46068 * 301.34313 * 12 11 10 44 44 H 1.09000 * 109.50149 * 58.58447 * 13 12 11 45 45 H 1.08999 * 109.49600 * 178.65157 * 13 12 11 46 46 H 1.09001 * 110.71496 * 324.78228 * 18 16 14 47 47 H 1.08995 * 110.72213 * 88.05748 * 18 16 14 48 48 H 1.09001 * 109.87933 * 262.77083 * 19 18 16 49 49 H 1.09002 * 110.01040 * 141.68260 * 19 18 16 50 50 H 0.97003 * 120.00109 * 179.97438 * 24 23 21 51 51 H 1.09002 * 110.36186 * 217.02715 * 29 20 19 52 52 H 1.09000 * 110.36815 * 94.71315 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7049 0.0050 5 6 4.7334 1.6361 0.0125 6 6 3.5975 -0.6607 -0.0009 7 6 4.8028 -1.4982 -0.0010 8 8 5.7466 -1.2061 -0.7114 9 7 4.8666 -2.5876 0.7899 10 6 3.8084 -2.8631 1.7712 11 6 4.4509 -3.0528 3.1489 12 6 5.5252 -4.1392 3.0612 13 6 6.6132 -3.7048 2.0766 14 6 5.9923 -3.5256 0.6828 15 1 5.6337 -4.4862 0.3133 16 6 7.0402 -2.9616 -0.2789 17 1 7.2382 -1.9112 -0.0654 18 6 6.6030 -3.1571 -1.7547 19 6 7.9475 -3.1977 -2.5110 20 7 8.9840 -3.5749 -1.5389 21 6 10.3209 -3.7023 -1.8068 22 1 11.0046 -3.9858 -1.0202 23 6 10.7974 -3.4667 -3.0890 24 7 9.9643 -3.1204 -4.0474 25 14 12.6212 -3.6398 -3.4542 26 1 13.3386 -4.0356 -2.2156 27 1 12.8210 -4.6798 -4.4951 28 1 13.1537 -2.3423 -3.9420 29 6 8.3455 -3.7941 -0.2283 30 7 2.2864 -1.0960 -0.0005 31 1 1.9849 -2.0179 -0.0004 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3634 -0.8897 -0.5142 35 1 5.0221 1.8651 -1.0133 36 1 4.4677 2.5581 0.5297 37 1 5.5676 1.1585 0.5267 38 1 3.1134 -2.0242 1.8046 39 1 3.2737 -3.7694 1.4873 40 1 4.9063 -2.1159 3.4701 41 1 3.6883 -3.3523 3.8679 42 1 5.9670 -4.2934 4.0457 43 1 5.0737 -5.0694 2.7164 44 1 7.0482 -2.7618 2.4077 45 1 7.3899 -4.4682 2.0326 46 1 6.0639 -4.0967 -1.8759 47 1 5.9961 -2.3168 -2.0917 48 1 8.1690 -2.2145 -2.9263 49 1 7.9033 -3.9365 -3.3112 50 1 10.2974 -2.9554 -4.9434 51 1 8.9923 -3.4372 0.5732 52 1 8.1165 -4.8508 -0.0899 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039240512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:28 Heat of formation + Delta-G solvation = 71.507198 kcal Electronic energy + Delta-G solvation = -32481.630630 eV Core-core repulsion = 28483.603297 eV Total energy + Delta-G solvation = -3998.027333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.48573 -40.44039 -37.40616 -36.87992 -33.75709 -33.24881 -32.84206 -31.99413 -31.02145 -29.33522 -28.98953 -27.35922 -26.72114 -24.81811 -24.46060 -23.01922 -21.93329 -21.26345 -20.48692 -19.75564 -19.64655 -19.34136 -17.64340 -16.71358 -16.22984 -16.15063 -15.79627 -15.08597 -14.94998 -14.52874 -14.30749 -14.18691 -13.99031 -13.71011 -13.57335 -13.37571 -13.25546 -13.11254 -12.91352 -12.71471 -12.55082 -12.19210 -12.10826 -12.06268 -11.92121 -11.65450 -11.34771 -11.14448 -10.92442 -10.82089 -10.75585 -10.63915 -10.32324 -10.07826 -10.01144 -9.92632 -9.71566 -9.55924 -9.46372 -8.88441 -8.49490 -8.37873 -8.35544 -6.64500 -5.56072 -2.88968 1.32776 2.47281 2.74268 2.85711 3.27497 3.47591 3.52226 3.55245 4.05538 4.41574 4.50224 4.61439 4.65754 4.66543 4.80924 4.92528 4.95462 5.09337 5.10682 5.13137 5.22245 5.31573 5.46991 5.49454 5.55748 5.62498 5.65480 5.71258 5.73769 5.79479 5.83049 5.91884 5.95038 6.00454 6.01674 6.09468 6.13047 6.27611 6.36744 6.49537 6.50873 6.62912 6.77633 6.94320 7.02687 7.07229 7.32305 7.38727 7.72706 7.80678 7.89904 8.03895 8.27407 8.43485 9.37669 9.98839 10.67033 11.55133 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.003205 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.964431 B = 8734.456912 C =10025.828156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.227 3.773 3 N -0.491 5.491 4 C 0.082 3.918 5 C -0.072 4.072 6 C -0.077 4.077 7 C 0.577 3.423 8 O -0.473 6.473 9 N -0.606 5.606 10 C 0.103 3.897 11 C -0.132 4.132 12 C -0.120 4.120 13 C -0.131 4.131 14 C 0.162 3.838 15 H 0.070 0.930 16 C -0.097 4.097 17 H 0.109 0.891 18 C -0.134 4.134 19 C 0.182 3.818 20 N -0.605 5.605 21 C -0.224 4.224 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.909 3.091 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.139 3.861 30 N -0.552 5.552 31 H 0.420 0.580 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.081 0.919 48 H 0.044 0.956 49 H 0.034 0.966 50 H 0.249 0.751 51 H 0.034 0.966 52 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.989 1.775 15.261 26.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.037 4.037 3 N -0.213 5.213 4 C -0.051 4.051 5 C -0.129 4.129 6 C -0.192 4.192 7 C 0.364 3.636 8 O -0.346 6.346 9 N -0.341 5.341 10 C -0.020 4.020 11 C -0.170 4.170 12 C -0.157 4.157 13 C -0.170 4.170 14 C 0.060 3.940 15 H 0.088 0.912 16 C -0.116 4.116 17 H 0.127 0.873 18 C -0.172 4.172 19 C 0.058 3.942 20 N -0.331 5.331 21 C -0.352 4.352 22 H 0.094 0.906 23 C -0.207 4.207 24 N -0.568 5.568 25 Si 0.740 3.260 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 C 0.012 3.988 30 N -0.158 5.158 31 H 0.259 0.741 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.054 0.946 47 H 0.099 0.901 48 H 0.062 0.938 49 H 0.052 0.948 50 H 0.060 0.940 51 H 0.052 0.948 52 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -21.550 2.772 14.667 26.215 hybrid contribution 0.901 -1.591 -0.249 1.845 sum -20.649 1.182 14.417 25.212 Atomic orbital electron populations 1.20256 0.84459 1.04426 1.03791 1.23322 0.95679 0.81598 1.03075 1.70032 1.01673 1.28276 1.21286 1.20961 0.93078 0.90197 1.00881 1.20151 0.92376 0.96989 1.03418 1.21092 0.84010 0.95504 1.18628 1.16994 0.85735 0.80311 0.80599 1.90970 1.35209 1.68458 1.39969 1.48005 1.24167 1.24597 1.37319 1.21777 0.90113 1.01137 0.88986 1.21878 0.98896 1.00259 0.95970 1.21537 0.96394 0.97998 0.99792 1.22088 0.98004 1.02706 0.94165 1.21489 0.85600 0.91217 0.95697 0.91202 1.22877 0.93243 1.01442 0.94037 0.87282 1.23223 0.99712 0.99057 0.95200 1.21067 0.83307 0.99494 0.90351 1.44481 1.03602 1.80816 1.04165 1.19094 0.82116 1.39511 0.94501 0.90633 1.24800 0.97729 1.02156 0.96027 1.70020 1.32169 1.53308 1.01289 0.86078 0.84957 0.77197 0.77760 1.20610 1.21927 1.21842 1.21622 0.92271 0.95290 0.89597 1.43343 1.05919 1.10020 1.56564 0.74100 0.89804 0.88810 0.90588 0.90213 0.91072 0.90744 0.90338 0.91683 0.91318 0.91003 0.91636 0.91888 0.91249 0.90059 0.94569 0.90093 0.93793 0.94794 0.94016 0.94821 0.97306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.51 36.00 0.38 0.01 16 2 C 0.23 2.21 8.12 -155.62 -1.26 0.95 16 3 N -0.49 -6.44 11.20 -6.85 -0.08 -6.51 16 4 C 0.08 1.14 7.14 -82.52 -0.59 0.55 16 5 C -0.07 -0.93 9.93 36.01 0.36 -0.57 16 6 C -0.08 -1.00 5.74 -82.14 -0.47 -1.47 16 7 C 0.58 8.49 6.92 -12.82 -0.09 8.40 16 8 O -0.47 -8.80 9.57 5.20 0.05 -8.75 16 9 N -0.61 -7.49 2.97 -166.47 -0.49 -7.98 16 10 C 0.10 0.88 5.71 -3.71 -0.02 0.86 16 11 C -0.13 -1.05 6.08 -26.61 -0.16 -1.21 16 12 C -0.12 -1.06 5.88 -26.69 -0.16 -1.21 16 13 C -0.13 -1.57 4.89 -26.39 -0.13 -1.70 16 14 C 0.16 2.29 2.59 -67.37 -0.17 2.11 16 15 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 16 C -0.10 -1.83 1.91 -88.47 -0.17 -2.00 16 17 H 0.11 2.31 5.92 -52.21 -0.31 2.00 16 18 C -0.13 -2.85 5.56 -24.90 -0.14 -2.99 16 19 C 0.18 4.89 5.38 -3.07 -0.02 4.87 16 20 N -0.60 -16.57 3.39 -170.08 -0.58 -17.15 16 21 C -0.22 -6.59 10.28 -15.06 -0.15 -6.74 16 22 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 23 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 24 N -0.92 -28.66 10.31 55.49 0.57 -28.09 16 25 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 29 C 0.14 3.03 5.36 -2.53 -0.01 3.02 16 30 N -0.55 -5.18 4.82 -7.02 -0.03 -5.22 16 31 H 0.42 2.71 8.29 -40.82 -0.34 2.37 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.99 7.79 -51.93 -0.40 0.59 16 38 H 0.08 0.63 5.37 -51.93 -0.28 0.35 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.00 7.21 -51.93 -0.37 0.63 16 46 H 0.04 0.72 7.85 -51.93 -0.41 0.32 16 47 H 0.08 1.76 5.56 -51.99 -0.29 1.47 16 48 H 0.04 1.32 7.38 -51.93 -0.38 0.94 16 49 H 0.03 1.00 7.50 -51.93 -0.39 0.61 16 50 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 51 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 52 H 0.01 0.20 7.87 -51.93 -0.41 -0.21 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -36.08 393.06 -11.18 -47.26 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -8.61 Total: -0.03 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -2.91 Total: 2.45 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -0.61 Total: -64.94 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.05 Total: -8.75 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.08 -11.18 -47.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039240512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.769 kcal (2) G-P(sol) polarization free energy of solvation -36.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds