Wall clock time and date at job start Wed Apr 1 2020 04:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30858 * 125.41786 * 2 1 4 4 C 1.33320 * 109.68598 * 179.77370 * 3 2 1 5 5 C 1.50702 * 126.10674 * 180.27655 * 4 3 2 6 6 C 1.36658 * 107.78462 * 0.40300 * 4 3 2 7 7 C 1.46768 * 126.84739 * 179.87759 * 6 4 3 8 8 O 1.21684 * 119.99641 * 317.31254 * 7 6 4 9 9 N 1.34771 * 120.00601 * 137.03367 * 7 6 4 10 10 C 1.46927 * 120.62580 * 352.76867 * 9 7 6 11 11 C 1.53193 * 108.77419 * 233.58089 * 10 9 7 12 12 C 1.53041 * 109.31441 * 305.36781 * 11 10 9 13 13 C 1.53035 * 109.53618 * 61.36556 * 12 11 10 14 14 C 1.46921 * 120.63439 * 172.48447 * 9 7 6 15 15 H 1.08990 * 109.58975 * 246.20354 * 14 9 7 16 16 C 1.53002 * 109.58633 * 6.63038 * 14 9 7 17 17 H 1.09003 * 110.88281 * 46.14968 * 16 14 9 18 18 C 1.55154 * 111.00421 * 282.22959 * 16 14 9 19 19 C 1.54320 * 102.93978 * 206.42444 * 18 16 14 20 20 N 1.47022 * 107.27458 * 22.18689 * 19 18 16 21 21 C 1.36938 * 125.64557 * 181.02389 * 20 19 18 22 22 H 1.08006 * 119.99540 * 180.02562 * 21 20 19 23 23 C 1.38805 * 120.00491 * 0.04228 * 21 20 19 24 24 N 1.31623 * 119.99877 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00285 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46779 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46963 * 119.99970 * 25 23 21 28 28 H 1.48499 * 109.47353 * 240.00407 * 25 23 21 29 29 C 1.47422 * 108.69975 * 1.06453 * 20 19 18 30 30 N 1.34491 * 125.42193 * 180.02562 * 2 1 3 31 31 H 0.97001 * 126.47088 * 359.96104 * 30 2 1 32 32 H 1.09004 * 109.47321 * 269.97502 * 1 2 3 33 33 H 1.08999 * 109.47622 * 29.97188 * 1 2 3 34 34 H 1.08995 * 109.47401 * 149.97535 * 1 2 3 35 35 H 1.08996 * 109.47064 * 270.14812 * 5 4 3 36 36 H 1.09000 * 109.47229 * 30.15204 * 5 4 3 37 37 H 1.09004 * 109.46940 * 150.15126 * 5 4 3 38 38 H 1.08996 * 109.59381 * 353.36942 * 10 9 7 39 39 H 1.08994 * 109.58850 * 113.65590 * 10 9 7 40 40 H 1.09004 * 109.49888 * 65.32048 * 11 10 9 41 41 H 1.09006 * 109.49817 * 185.41166 * 11 10 9 42 42 H 1.09003 * 109.46116 * 181.38168 * 12 11 10 43 43 H 1.08996 * 109.46068 * 301.34313 * 12 11 10 44 44 H 1.09000 * 109.50149 * 58.58447 * 13 12 11 45 45 H 1.08999 * 109.49600 * 178.65157 * 13 12 11 46 46 H 1.09001 * 110.71496 * 324.78228 * 18 16 14 47 47 H 1.08995 * 110.72213 * 88.05748 * 18 16 14 48 48 H 1.09001 * 109.87933 * 262.77083 * 19 18 16 49 49 H 1.09002 * 110.01040 * 141.68260 * 19 18 16 50 50 H 0.97003 * 120.00109 * 179.97438 * 24 23 21 51 51 H 1.09002 * 110.36186 * 217.02715 * 29 20 19 52 52 H 1.09000 * 110.36815 * 94.71315 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7049 0.0050 5 6 4.7334 1.6361 0.0125 6 6 3.5975 -0.6607 -0.0009 7 6 4.8028 -1.4982 -0.0010 8 8 5.7466 -1.2061 -0.7114 9 7 4.8666 -2.5876 0.7899 10 6 3.8084 -2.8631 1.7712 11 6 4.4509 -3.0528 3.1489 12 6 5.5252 -4.1392 3.0612 13 6 6.6132 -3.7048 2.0766 14 6 5.9923 -3.5256 0.6828 15 1 5.6337 -4.4862 0.3133 16 6 7.0402 -2.9616 -0.2789 17 1 7.2382 -1.9112 -0.0654 18 6 6.6030 -3.1571 -1.7547 19 6 7.9475 -3.1977 -2.5110 20 7 8.9840 -3.5749 -1.5389 21 6 10.3209 -3.7023 -1.8068 22 1 11.0046 -3.9858 -1.0202 23 6 10.7974 -3.4667 -3.0890 24 7 9.9643 -3.1204 -4.0474 25 14 12.6212 -3.6398 -3.4542 26 1 13.3386 -4.0356 -2.2156 27 1 12.8210 -4.6798 -4.4951 28 1 13.1537 -2.3423 -3.9420 29 6 8.3455 -3.7941 -0.2283 30 7 2.2864 -1.0960 -0.0005 31 1 1.9849 -2.0179 -0.0004 32 1 -0.3634 -0.0004 1.0277 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3634 -0.8897 -0.5142 35 1 5.0221 1.8651 -1.0133 36 1 4.4677 2.5581 0.5297 37 1 5.5676 1.1585 0.5267 38 1 3.1134 -2.0242 1.8046 39 1 3.2737 -3.7694 1.4873 40 1 4.9063 -2.1159 3.4701 41 1 3.6883 -3.3523 3.8679 42 1 5.9670 -4.2934 4.0457 43 1 5.0737 -5.0694 2.7164 44 1 7.0482 -2.7618 2.4077 45 1 7.3899 -4.4682 2.0326 46 1 6.0639 -4.0967 -1.8759 47 1 5.9961 -2.3168 -2.0917 48 1 8.1690 -2.2145 -2.9263 49 1 7.9033 -3.9365 -3.3112 50 1 10.2974 -2.9554 -4.9434 51 1 8.9923 -3.4372 0.5732 52 1 8.1165 -4.8508 -0.0899 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039240512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:27 Heat of formation + Delta-G solvation = 48.193382 kcal Electronic energy + Delta-G solvation = -32482.641593 eV Core-core repulsion = 28483.603297 eV Total energy + Delta-G solvation = -3999.038296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.37423 -41.58767 -38.75591 -38.33336 -34.99378 -34.56390 -33.89755 -33.04481 -32.38369 -30.89016 -30.08648 -28.81890 -27.91653 -26.51312 -25.58196 -24.25870 -22.93046 -22.14348 -21.91049 -21.27891 -21.10348 -20.26872 -18.87631 -18.53864 -17.32822 -17.18025 -16.89118 -16.59341 -16.34124 -15.88750 -15.65073 -15.16065 -15.09298 -15.00675 -14.57803 -14.31078 -14.21254 -14.07681 -13.97071 -13.92189 -13.70691 -13.55811 -13.34724 -13.32160 -13.16281 -13.00202 -12.85271 -12.78969 -12.27725 -12.20682 -11.98847 -11.96317 -11.75150 -11.61816 -11.44617 -11.37419 -11.27002 -11.14066 -10.92984 -10.71762 -10.17548 -9.56266 -9.30992 -8.87334 -7.83695 -5.20390 0.38937 1.42129 1.45172 1.55365 1.57241 1.77101 1.93799 2.32805 2.49279 3.30094 3.33664 3.49350 3.65277 3.77404 3.87112 3.93685 4.02517 4.04911 4.12810 4.18953 4.22100 4.32564 4.40142 4.50205 4.57385 4.60623 4.66353 4.71640 4.71805 4.78036 4.79764 4.88078 4.91003 4.94254 4.96607 5.02473 5.07205 5.10484 5.15779 5.19137 5.20537 5.27522 5.44026 5.46519 5.52749 5.54129 5.70178 5.75228 5.83499 6.19688 6.31420 6.39110 6.93442 7.09510 7.16245 7.78835 8.45709 9.26973 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.003205 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.964431 B = 8734.456912 C =10025.828156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.244 3.756 3 N -0.526 5.526 4 C 0.061 3.939 5 C -0.068 4.068 6 C -0.089 4.089 7 C 0.576 3.424 8 O -0.526 6.526 9 N -0.599 5.599 10 C 0.099 3.901 11 C -0.128 4.128 12 C -0.113 4.113 13 C -0.129 4.129 14 C 0.169 3.831 15 H 0.083 0.917 16 C -0.076 4.076 17 H 0.084 0.916 18 C -0.116 4.116 19 C 0.195 3.805 20 N -0.628 5.628 21 C -0.240 4.240 22 H 0.085 0.915 23 C -0.075 4.075 24 N -0.955 5.955 25 Si 0.983 3.017 26 H -0.261 1.261 27 H -0.290 1.290 28 H -0.294 1.294 29 C 0.136 3.864 30 N -0.537 5.537 31 H 0.436 0.564 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.052 0.948 47 H 0.077 0.923 48 H -0.005 1.005 49 H -0.002 1.002 50 H 0.244 0.756 51 H 0.037 0.963 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.675 0.011 18.048 30.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.020 4.020 3 N -0.248 5.248 4 C -0.072 4.072 5 C -0.126 4.126 6 C -0.205 4.205 7 C 0.364 3.636 8 O -0.403 6.403 9 N -0.332 5.332 10 C -0.023 4.023 11 C -0.166 4.166 12 C -0.151 4.151 13 C -0.167 4.167 14 C 0.066 3.934 15 H 0.101 0.899 16 C -0.095 4.095 17 H 0.102 0.898 18 C -0.154 4.154 19 C 0.069 3.931 20 N -0.354 5.354 21 C -0.369 4.369 22 H 0.102 0.898 23 C -0.267 4.267 24 N -0.604 5.604 25 Si 0.811 3.189 26 H -0.186 1.186 27 H -0.217 1.217 28 H -0.221 1.221 29 C 0.011 3.989 30 N -0.145 5.145 31 H 0.279 0.721 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.014 0.986 49 H 0.016 0.984 50 H 0.054 0.946 51 H 0.056 0.944 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -24.283 0.956 17.533 29.967 hybrid contribution 1.645 -1.005 -1.073 2.206 sum -22.638 -0.049 16.461 27.990 Atomic orbital electron populations 1.20514 0.80841 1.05775 1.05648 1.24211 0.97306 0.80733 0.99787 1.70036 1.01490 1.30057 1.23180 1.21098 0.93666 0.90813 1.01599 1.20069 0.92311 0.97616 1.02584 1.20703 0.84833 0.94948 1.20035 1.17259 0.85654 0.80540 0.80111 1.90947 1.37085 1.69990 1.42312 1.48056 1.24471 1.23354 1.37363 1.22116 0.89151 1.02795 0.88247 1.21882 0.99320 0.99336 0.96073 1.21514 0.95494 0.98757 0.99299 1.22049 0.99088 1.01999 0.93554 1.21295 0.84997 0.91363 0.95720 0.89900 1.22591 0.93451 0.99793 0.93703 0.89793 1.23026 0.96438 0.99752 0.96135 1.20753 0.86375 0.95546 0.90378 1.44834 1.03447 1.80762 1.06394 1.19558 0.83494 1.38975 0.94920 0.89750 1.25774 1.02656 1.02325 0.95928 1.70279 1.34255 1.54519 1.01374 0.84939 0.79224 0.76748 0.78009 1.18558 1.21713 1.22071 1.21831 0.93386 0.96551 0.87130 1.43214 1.04365 1.10967 1.55915 0.72148 0.87528 0.88817 0.87860 0.91511 0.89792 0.91908 0.89596 0.88668 0.92809 0.87837 0.90344 0.90338 0.92768 0.90417 0.92898 0.90472 0.98648 0.98429 0.94648 0.94443 0.95577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.51 71.23 0.75 0.30 16 2 C 0.24 4.16 8.12 138.20 1.12 5.28 16 3 N -0.53 -13.31 11.20 -175.58 -1.97 -15.28 16 4 C 0.06 1.72 7.14 41.96 0.30 2.02 16 5 C -0.07 -1.88 9.93 71.24 0.71 -1.17 16 6 C -0.09 -2.26 5.74 40.01 0.23 -2.03 16 7 C 0.58 16.99 6.92 86.47 0.60 17.59 16 8 O -0.53 -20.66 9.57 -4.30 -0.04 -20.70 16 9 N -0.60 -13.78 2.97 -798.81 -2.37 -16.15 16 10 C 0.10 1.30 5.71 86.36 0.49 1.79 16 11 C -0.13 -1.52 6.08 30.67 0.19 -1.33 16 12 C -0.11 -1.56 5.88 30.62 0.18 -1.38 16 13 C -0.13 -2.82 4.89 30.82 0.15 -2.67 16 14 C 0.17 4.50 2.59 45.12 0.12 4.62 16 15 H 0.08 2.07 7.87 -2.39 -0.02 2.05 16 16 C -0.08 -2.94 1.91 -9.40 -0.02 -2.95 16 17 H 0.08 3.75 5.92 -7.55 -0.04 3.71 16 18 C -0.12 -5.11 5.56 31.78 0.18 -4.93 16 19 C 0.19 11.12 5.38 86.73 0.47 11.59 16 20 N -0.63 -35.81 3.39 -692.01 -2.35 -38.16 16 21 C -0.24 -14.57 10.28 84.03 0.86 -13.71 16 22 H 0.08 4.82 7.83 -2.91 -0.02 4.80 16 23 C -0.07 -4.58 5.49 84.86 0.47 -4.12 16 24 N -0.95 -62.64 10.31 21.65 0.22 -62.42 16 25 Si 0.98 48.78 29.55 68.60 2.03 50.81 16 26 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 28 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 29 C 0.14 6.02 5.36 86.85 0.47 6.48 16 30 N -0.54 -8.74 4.82 -176.12 -0.85 -9.59 16 31 H 0.44 4.00 8.29 -92.71 -0.77 3.24 16 32 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 1.83 7.79 -2.38 -0.02 1.81 16 38 H 0.09 1.06 5.37 -2.39 -0.01 1.04 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 1.76 7.21 -2.39 -0.02 1.75 16 46 H 0.05 2.12 7.85 -2.39 -0.02 2.10 16 47 H 0.08 3.54 5.56 -4.06 -0.02 3.52 16 48 H 0.00 -0.31 7.38 -2.39 -0.02 -0.33 16 49 H 0.00 -0.16 7.50 -2.39 -0.02 -0.17 16 50 H 0.24 15.48 8.31 -92.71 -0.77 14.71 16 51 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.03 1.09 7.87 -2.39 -0.02 1.07 16 Total: -1.00 -85.60 393.06 2.05 -83.56 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.12 Total: 12.54 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 7.25 Total: 15.38 kcal Atomic # 7 Polarization: -134.29 SS G_CDS: -7.31 Total: -141.60 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.04 Total: -20.70 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.03 Total: 50.81 kcal Total: -85.60 2.05 -83.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039240512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.752 kcal (2) G-P(sol) polarization free energy of solvation -85.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds