Wall clock time and date at job start Wed Apr 1 2020 05:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30784 * 125.72384 * 2 1 4 4 C 1.34428 * 109.31864 * 179.97438 * 3 2 1 5 5 C 1.33861 * 107.79975 * 359.97438 * 4 3 2 6 6 N 1.34407 * 125.72350 * 179.97438 * 2 1 3 7 7 C 1.46475 * 128.44194 * 0.16245 * 6 2 1 8 8 C 1.53283 * 108.82463 * 162.60006 * 7 6 2 9 9 C 1.53489 * 109.50910 * 50.72174 * 8 7 6 10 10 H 1.08996 * 109.50259 * 50.13152 * 9 8 7 11 11 C 1.50700 * 109.46603 * 170.17710 * 9 8 7 12 12 O 1.21278 * 120.00190 * 359.88847 * 11 9 8 13 13 N 1.34783 * 120.00077 * 179.88418 * 11 9 8 14 14 C 1.46500 * 120.00105 * 179.97438 * 13 11 9 15 15 H 1.08999 * 109.46771 * 35.00433 * 14 13 11 16 16 C 1.53005 * 109.47128 * 275.00348 * 14 13 11 17 17 C 1.52999 * 109.46827 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.46994 * 60.00084 * 17 16 14 19 19 C 1.53005 * 109.47265 * 299.99648 * 18 17 16 20 20 C 1.52998 * 109.46848 * 155.00337 * 14 13 11 21 21 H 1.08999 * 109.47356 * 60.00454 * 20 14 13 22 22 N 1.46501 * 109.47185 * 299.99803 * 20 14 13 23 23 C 1.36942 * 119.99810 * 155.00069 * 22 20 14 24 24 H 1.08000 * 120.00193 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99834 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99968 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 119.99739 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47438 * 90.00227 * 27 25 23 29 29 H 1.48503 * 109.47098 * 209.99779 * 27 25 23 30 30 H 1.48498 * 109.47516 * 329.99611 * 27 25 23 31 31 C 1.50711 * 128.67808 * 180.14571 * 5 4 3 32 32 H 1.08999 * 109.46970 * 270.00478 * 1 2 3 33 33 H 1.08999 * 109.46736 * 29.99967 * 1 2 3 34 34 H 1.08991 * 109.47367 * 150.00272 * 1 2 3 35 35 H 1.08004 * 126.10137 * 179.97438 * 4 3 2 36 36 H 1.09002 * 109.59959 * 282.44103 * 7 6 2 37 37 H 1.08997 * 109.60096 * 42.75914 * 7 6 2 38 38 H 1.09004 * 109.43025 * 170.91913 * 8 7 6 39 39 H 1.09008 * 109.43207 * 290.76818 * 8 7 6 40 40 H 0.96997 * 119.99566 * 0.02562 * 13 11 9 41 41 H 1.09003 * 109.46953 * 299.99972 * 16 14 13 42 42 H 1.08999 * 109.46926 * 60.00053 * 16 14 13 43 43 H 1.08999 * 109.46926 * 299.99995 * 17 16 14 44 44 H 1.09000 * 109.46994 * 180.02562 * 17 16 14 45 45 H 1.09003 * 109.47170 * 180.02562 * 18 17 16 46 46 H 1.08999 * 109.47356 * 60.00174 * 18 17 16 47 47 H 1.09003 * 109.46953 * 300.00272 * 19 18 17 48 48 H 1.08999 * 109.46926 * 180.02562 * 19 18 17 49 49 H 0.97004 * 120.00200 * 335.00854 * 22 20 14 50 50 H 0.96997 * 119.99920 * 179.97438 * 26 25 23 51 51 H 1.08999 * 109.74552 * 283.83100 * 31 5 4 52 52 H 1.09000 * 109.74900 * 44.55082 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6821 0.0006 5 6 3.5927 -0.6561 0.0015 6 7 2.2918 -1.0912 0.0005 7 6 1.8921 -2.5003 -0.0021 8 6 3.0900 -3.3534 -0.4343 9 6 4.3185 -2.9742 0.4042 10 1 4.0543 -2.9837 1.4616 11 6 5.4239 -3.9671 0.1531 12 8 5.2489 -4.8876 -0.6169 13 7 6.6073 -3.8321 0.7840 14 6 7.6818 -4.7976 0.5403 15 1 7.6500 -5.1216 -0.4999 16 6 7.4972 -6.0083 1.4575 17 6 8.6190 -7.0169 1.2024 18 6 9.9705 -6.3602 1.4905 19 6 10.1551 -5.1495 0.5733 20 6 9.0330 -4.1405 0.8288 21 1 9.0648 -3.8165 1.8690 22 7 9.2097 -2.9813 -0.0494 23 6 10.0371 -1.9570 0.3269 24 1 10.5597 -2.0040 1.2709 25 6 10.2041 -0.8584 -0.5050 26 7 9.5676 -0.8014 -1.6557 27 14 11.3333 0.5384 0.0080 28 1 12.7084 0.2696 -0.4841 29 1 10.8399 1.8128 -0.5734 30 1 11.3493 0.6436 1.4891 31 6 4.7919 -1.5691 0.0054 32 1 -0.3633 0.0001 1.0277 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3633 -0.8899 -0.5137 35 1 4.4171 1.3395 0.0003 36 1 1.5772 -2.7930 0.9995 37 1 1.0686 -2.6456 -0.7013 38 1 2.8567 -4.4078 -0.2860 39 1 3.3013 -3.1744 -1.4886 40 1 6.7471 -3.0960 1.4001 41 1 7.5290 -5.6842 2.4978 42 1 6.5346 -6.4764 1.2519 43 1 8.5868 -7.3409 0.1622 44 1 8.4873 -7.8797 1.8555 45 1 10.7698 -7.0786 1.3084 46 1 10.0028 -6.0363 2.5307 47 1 10.1229 -5.4735 -0.4669 48 1 11.1181 -4.6819 0.7783 49 1 8.7405 -2.9392 -0.8974 50 1 9.6840 -0.0335 -2.2368 51 1 5.2362 -1.5976 -0.9895 52 1 5.5258 -1.2100 0.7269 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085331221.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:49 Heat of formation + Delta-G solvation = 9.006612 kcal Electronic energy + Delta-G solvation = -31634.279276 eV Core-core repulsion = 27633.541714 eV Total energy + Delta-G solvation = -4000.737562 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.37055 -39.96730 -38.13163 -36.16278 -34.10013 -33.89175 -33.32083 -31.31727 -31.16159 -29.89338 -29.23732 -27.79581 -26.56926 -24.31014 -23.76697 -23.21696 -21.70932 -21.09459 -20.66131 -20.10123 -19.49234 -18.90740 -17.34510 -16.78964 -16.76135 -16.06494 -15.87491 -15.14298 -14.97944 -14.28534 -14.13530 -14.08209 -13.99862 -13.83524 -13.62017 -13.61525 -13.34869 -13.02848 -12.99266 -12.94756 -12.72277 -12.48592 -12.16824 -12.15340 -11.90117 -11.81551 -11.22466 -11.12138 -11.10845 -10.94168 -10.87398 -10.78942 -10.59995 -10.36169 -10.19024 -9.96410 -9.78169 -9.67410 -9.49446 -9.46471 -8.94408 -8.63946 -8.12600 -7.01895 -5.80868 -3.10752 2.05910 2.71248 2.83944 3.19144 3.39419 3.41216 3.46024 3.48169 4.27382 4.42062 4.45059 4.53201 4.54588 4.72807 4.88997 4.96947 5.01861 5.04602 5.10188 5.19728 5.22521 5.32040 5.37761 5.47569 5.49012 5.51043 5.61409 5.63289 5.67826 5.72002 5.77956 5.85413 5.91318 5.93334 5.94261 5.96913 6.06696 6.07815 6.27001 6.41830 6.42833 6.43432 6.46704 6.54562 6.81677 6.84541 6.85637 7.04079 7.23437 7.65143 7.83754 8.14331 8.36079 8.49060 9.48336 10.03650 10.39115 11.40791 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008764 B = 0.003743 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.164284 B = 7479.492189 C =10260.716238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.197 3.803 3 N -0.493 5.493 4 C -0.019 4.019 5 C -0.015 4.015 6 N -0.454 5.454 7 C 0.105 3.895 8 C -0.112 4.112 9 C -0.109 4.109 10 H 0.097 0.903 11 C 0.522 3.478 12 O -0.549 6.549 13 N -0.704 5.704 14 C 0.141 3.859 15 H 0.084 0.916 16 C -0.123 4.123 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.133 4.133 20 C 0.173 3.827 21 H 0.050 0.950 22 N -0.721 5.721 23 C -0.243 4.243 24 H 0.069 0.931 25 C -0.007 4.007 26 N -0.927 5.927 27 Si 0.903 3.097 28 H -0.291 1.291 29 H -0.291 1.291 30 H -0.282 1.282 31 C -0.035 4.035 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.172 0.828 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.403 0.597 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.065 0.935 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.094 0.906 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 -7.914 6.947 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 N -0.213 5.213 4 C -0.166 4.166 5 C -0.128 4.128 6 N -0.139 5.139 7 C -0.018 4.018 8 C -0.150 4.150 9 C -0.131 4.131 10 H 0.115 0.885 11 C 0.307 3.693 12 O -0.427 6.427 13 N -0.352 5.352 14 C 0.035 3.965 15 H 0.102 0.898 16 C -0.162 4.162 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.174 4.174 20 C 0.063 3.937 21 H 0.068 0.932 22 N -0.362 5.362 23 C -0.374 4.374 24 H 0.087 0.913 25 C -0.204 4.204 26 N -0.575 5.575 27 Si 0.734 3.266 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 C -0.074 4.074 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.189 0.811 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.238 0.762 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.113 0.887 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.371 -7.742 6.467 18.386 hybrid contribution 1.047 0.392 0.199 1.136 sum -14.324 -7.350 6.667 17.425 Atomic orbital electron populations 1.20116 0.85229 1.03704 1.03174 1.23056 0.95470 0.81431 1.06498 1.70439 1.02090 1.28072 1.20716 1.21890 0.94688 0.92124 1.07915 1.21062 0.85162 0.95427 1.11176 1.45263 1.06366 1.07064 1.55212 1.21996 0.98855 0.77963 1.02955 1.21741 0.91893 1.00293 1.01105 1.21477 0.94705 0.95098 1.01813 0.88528 1.20233 0.83415 0.85461 0.80162 1.90670 1.81631 1.34069 1.36334 1.45915 1.12697 1.30483 1.46125 1.21312 0.87003 0.88049 1.00113 0.89822 1.21866 0.98734 0.95994 0.99640 1.21469 0.94759 0.97407 1.01549 1.21583 0.96369 0.97781 1.00042 1.22236 1.00942 0.95258 0.99004 1.20464 0.89995 0.88057 0.95212 0.93196 1.42400 1.54683 1.17586 1.21481 1.19178 1.19344 0.96424 1.02425 0.91282 1.24704 1.00369 0.98592 0.96724 1.69658 1.45771 1.30997 1.11082 0.86271 0.80513 0.82192 0.77643 1.21830 1.21773 1.20807 1.20213 0.92994 0.89538 1.04633 0.90455 0.89361 0.91162 0.81090 0.89824 0.89019 0.88518 0.90025 0.76187 0.92076 0.92051 0.91990 0.92427 0.92696 0.92393 0.92486 0.91595 0.78156 0.93471 0.88743 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.24 36.01 0.37 -0.15 16 2 C 0.20 2.53 7.94 -155.75 -1.24 1.29 16 3 N -0.49 -7.78 11.27 -11.02 -0.12 -7.90 16 4 C -0.02 -0.30 11.84 -17.95 -0.21 -0.51 16 5 C -0.01 -0.21 6.57 -81.73 -0.54 -0.74 16 6 N -0.45 -5.52 3.13 -109.43 -0.34 -5.86 16 7 C 0.10 0.92 6.66 -3.91 -0.03 0.89 16 8 C -0.11 -1.19 4.68 -26.33 -0.12 -1.31 16 9 C -0.11 -1.30 2.55 -91.24 -0.23 -1.53 16 10 H 0.10 0.99 8.12 -51.93 -0.42 0.57 16 11 C 0.52 7.76 7.10 -10.98 -0.08 7.68 16 12 O -0.55 -9.81 15.48 5.56 0.09 -9.72 16 13 N -0.70 -10.44 4.81 -53.80 -0.26 -10.70 16 14 C 0.14 2.23 1.98 -67.93 -0.13 2.10 16 15 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 16 C -0.12 -1.64 5.49 -26.73 -0.15 -1.79 16 17 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 18 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 19 C -0.13 -2.23 5.50 -26.70 -0.15 -2.37 16 20 C 0.17 3.10 2.30 -67.90 -0.16 2.94 16 21 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 22 N -0.72 -16.42 4.95 -53.40 -0.26 -16.68 16 23 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 27 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 30 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 31 C -0.04 -0.48 5.45 -27.60 -0.15 -0.63 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.42 7.59 -51.93 -0.39 0.03 16 35 H 0.17 2.49 8.06 -52.48 -0.42 2.07 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.62 7.71 -51.93 -0.40 0.22 16 38 H 0.10 0.97 7.78 -51.93 -0.40 0.56 16 39 H 0.08 1.01 8.12 -51.92 -0.42 0.59 16 40 H 0.40 5.70 8.32 -40.82 -0.34 5.36 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.38 9.70 7.80 -40.82 -0.32 9.38 16 50 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 51 H 0.09 1.49 8.11 -51.93 -0.42 1.06 16 52 H 0.10 1.32 7.94 -51.93 -0.41 0.91 16 LS Contribution 410.07 15.07 6.18 6.18 Total: -1.00 -31.93 410.07 -11.36 -43.29 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -8.97 Total: 14.91 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.37 Total: -4.09 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -0.27 Total: -67.11 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.93 -11.36 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085331221.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.295 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds