Wall clock time and date at job start Wed Apr 1 2020 04:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35359 * 127.25170 * 2 1 4 4 N 1.35037 * 107.22956 * 180.23926 * 3 2 1 5 5 H 0.97001 * 124.88617 * 179.75623 * 4 3 2 6 6 N 1.28464 * 110.23099 * 359.76149 * 4 3 2 7 7 C 1.31808 * 110.07196 * 0.02562 * 6 4 3 8 8 C 1.47715 * 126.51654 * 179.97438 * 7 6 4 9 9 O 1.21576 * 119.99648 * 186.51274 * 8 7 6 10 10 N 1.34775 * 120.00230 * 6.51824 * 8 7 6 11 11 C 1.46922 * 120.62957 * 7.37638 * 10 8 7 12 12 C 1.53196 * 108.77951 * 233.63537 * 11 10 8 13 13 C 1.53037 * 109.31041 * 305.36771 * 12 11 10 14 14 C 1.53042 * 109.54147 * 61.36347 * 13 12 11 15 15 C 1.46924 * 120.62940 * 187.40713 * 10 8 7 16 16 H 1.08997 * 109.69914 * 246.21927 * 15 10 8 17 17 C 1.52999 * 109.59038 * 6.57821 * 15 10 8 18 18 C 1.52999 * 112.84897 * 59.98319 * 17 15 10 19 19 N 1.46500 * 109.47073 * 180.02562 * 18 17 15 20 20 C 1.36937 * 120.00156 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99431 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00037 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00165 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00292 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46938 * 90.00163 * 24 22 20 26 26 H 1.48493 * 109.47588 * 209.99943 * 24 22 20 27 27 H 1.48497 * 109.46990 * 330.00648 * 24 22 20 28 28 C 1.53782 * 113.61379 * 191.18331 * 17 15 10 29 29 C 1.53953 * 87.01663 * 89.22945 * 28 17 15 30 30 C 1.53778 * 87.11562 * 25.35935 * 29 28 17 31 31 H 1.08994 * 109.46978 * 270.14494 * 1 2 3 32 32 H 1.09005 * 109.46535 * 30.14020 * 1 2 3 33 33 H 1.08993 * 109.46951 * 150.13995 * 1 2 3 34 34 H 1.08003 * 126.38553 * 359.96696 * 3 2 1 35 35 H 1.09000 * 109.58582 * 113.84611 * 11 10 8 36 36 H 1.09005 * 109.70749 * 353.49008 * 11 10 8 37 37 H 1.08997 * 109.49686 * 185.41760 * 12 11 10 38 38 H 1.09001 * 109.49425 * 65.31382 * 12 11 10 39 39 H 1.09004 * 109.45985 * 301.34074 * 13 12 11 40 40 H 1.08998 * 109.46114 * 181.38571 * 13 12 11 41 41 H 1.08996 * 109.49859 * 178.68344 * 14 13 12 42 42 H 1.09000 * 109.52290 * 58.59718 * 14 13 12 43 43 H 1.09004 * 109.46950 * 60.00747 * 18 17 15 44 44 H 1.08993 * 109.47037 * 300.00343 * 18 17 15 45 45 H 0.97003 * 119.99794 * 359.97438 * 19 18 17 46 46 H 0.97001 * 120.00106 * 179.97438 * 23 22 20 47 47 H 1.09000 * 113.60872 * 203.74791 * 28 17 15 48 48 H 1.08995 * 113.61217 * 334.65221 * 28 17 15 49 49 H 1.09008 * 113.53483 * 270.80835 * 29 28 17 50 50 H 1.09004 * 113.66778 * 139.93285 * 29 28 17 51 51 H 1.08998 * 113.61386 * 220.08795 * 30 29 28 52 52 H 1.09002 * 113.60844 * 89.18764 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0774 0.0000 4 7 3.5951 0.6151 -0.0054 5 1 4.3888 1.1727 -0.0100 6 7 3.5998 -0.6695 -0.0036 7 6 2.3635 -1.1264 0.0023 8 6 1.9505 -2.5447 0.0055 9 8 0.7756 -2.8359 -0.1084 10 7 2.8760 -3.5158 0.1348 11 6 4.2750 -3.1814 0.4343 12 6 5.1751 -3.8392 -0.6165 13 6 4.8839 -5.3409 -0.6636 14 6 3.4252 -5.5671 -1.0673 15 6 2.5053 -4.9288 -0.0217 16 1 2.6202 -5.4465 0.9306 17 6 1.0515 -5.0291 -0.4879 18 6 0.8082 -4.3330 -1.8285 19 7 -0.6012 -4.4734 -2.2028 20 6 -1.0566 -3.9270 -3.3730 21 1 -0.3765 -3.3929 -4.0201 22 6 -2.3920 -4.0595 -3.7274 23 7 -2.8298 -3.5339 -4.8519 24 14 -3.5681 -4.9839 -2.6086 25 1 -4.1765 -4.0372 -1.6396 26 1 -4.6377 -5.6119 -3.4250 27 1 -2.8250 -6.0372 -1.8714 28 6 0.4804 -6.4554 -0.4217 29 6 0.0493 -6.1295 1.0198 30 6 0.0293 -4.6512 0.5970 31 1 -0.3633 0.0026 1.0276 32 1 -0.3632 0.8888 -0.5161 33 1 -0.3633 -0.8912 -0.5116 34 1 2.0221 2.1137 -0.0005 35 1 4.5361 -3.5550 1.4245 36 1 4.4090 -2.1001 0.4047 37 1 6.2202 -3.6794 -0.3516 38 1 4.9753 -3.3991 -1.5934 39 1 5.0601 -5.7760 0.3202 40 1 5.5403 -5.8154 -1.3931 41 1 3.2249 -6.6370 -1.1234 42 1 3.2415 -5.1110 -2.0402 43 1 1.4351 -4.7900 -2.5942 44 1 1.0564 -3.2755 -1.7390 45 1 -1.2117 -4.9540 -1.6221 46 1 -3.7630 -3.6269 -5.0998 47 1 -0.3560 -6.6227 -1.1004 48 1 1.2409 -7.2336 -0.4856 49 1 0.8110 -6.3604 1.7647 50 1 -0.9332 -6.5220 1.2821 51 1 0.4260 -3.9750 1.3543 52 1 -0.9308 -4.3244 0.1974 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105537726.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:12 Heat of formation + Delta-G solvation = 141.423020 kcal Electronic energy + Delta-G solvation = -33838.091591 eV Core-core repulsion = 29843.096036 eV Total energy + Delta-G solvation = -3994.995556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.72267 -41.08499 -37.78765 -37.23249 -33.86330 -33.00224 -32.93332 -31.56388 -30.95458 -30.56114 -27.26514 -26.93530 -25.61079 -25.25580 -23.58589 -23.26205 -22.14437 -21.61901 -20.81649 -20.21143 -19.22924 -18.12062 -17.64049 -17.16550 -16.60607 -16.01488 -15.70418 -15.11197 -14.79881 -14.60927 -14.29061 -14.20306 -14.05397 -13.59258 -13.52142 -13.39911 -13.02131 -12.87813 -12.72742 -12.67149 -12.38764 -12.14102 -11.87009 -11.78901 -11.67186 -11.32118 -11.14389 -10.91034 -10.86951 -10.76576 -10.62972 -10.48534 -10.07766 -10.01630 -9.84935 -9.52785 -9.37104 -9.28021 -9.21337 -8.79136 -8.73823 -8.59887 -8.11149 -6.82644 -5.56410 -2.85824 1.62967 2.16339 2.74699 3.22845 3.51573 3.55579 3.58289 3.64088 4.42625 4.71237 4.78176 4.81555 4.85085 4.95642 5.06611 5.16924 5.23236 5.28194 5.36269 5.39245 5.40776 5.53466 5.56614 5.61981 5.67382 5.76444 5.81115 5.88476 5.91865 6.00942 6.02227 6.06363 6.10319 6.17188 6.19364 6.22046 6.32746 6.38818 6.39940 6.51055 6.56500 6.65300 6.75054 6.78778 6.91650 7.05032 7.10687 7.18101 7.27254 7.64889 7.88947 8.24096 8.57219 8.64698 9.46855 10.20774 10.43708 11.63329 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009804 B = 0.005180 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.394238 B = 5404.300143 C = 7002.944408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.138 4.138 3 C -0.022 4.022 4 N -0.391 5.391 5 H 0.442 0.558 6 N -0.269 5.269 7 C 0.005 3.995 8 C 0.568 3.432 9 O -0.456 6.456 10 N -0.596 5.596 11 C 0.080 3.920 12 C -0.130 4.130 13 C -0.119 4.119 14 C -0.134 4.134 15 C 0.181 3.819 16 H 0.069 0.931 17 C -0.079 4.079 18 C 0.173 3.827 19 N -0.746 5.746 20 C -0.222 4.222 21 H 0.085 0.915 22 C -0.002 4.002 23 N -0.943 5.943 24 Si 0.880 3.120 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.278 1.278 28 C -0.134 4.134 29 C -0.170 4.170 30 C -0.069 4.069 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.181 0.819 35 H 0.054 0.946 36 H 0.134 0.866 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.005 0.995 44 H 0.054 0.946 45 H 0.359 0.641 46 H 0.255 0.745 47 H 0.089 0.911 48 H 0.056 0.944 49 H 0.067 0.933 50 H 0.057 0.943 51 H 0.062 0.938 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.398 5.207 15.414 24.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.148 4.148 3 C -0.167 4.167 4 N -0.103 5.103 5 H 0.286 0.714 6 N -0.104 5.104 7 C -0.156 4.156 8 C 0.355 3.645 9 O -0.327 6.327 10 N -0.331 5.331 11 C -0.044 4.044 12 C -0.168 4.168 13 C -0.156 4.156 14 C -0.172 4.172 15 C 0.078 3.922 16 H 0.087 0.913 17 C -0.080 4.080 18 C 0.047 3.953 19 N -0.392 5.392 20 C -0.352 4.352 21 H 0.103 0.897 22 C -0.197 4.197 23 N -0.593 5.593 24 Si 0.711 3.289 25 H -0.212 1.212 26 H -0.221 1.221 27 H -0.205 1.205 28 C -0.172 4.172 29 C -0.207 4.207 30 C -0.107 4.107 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.198 0.802 35 H 0.073 0.927 36 H 0.151 0.849 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.023 0.977 44 H 0.071 0.929 45 H 0.194 0.806 46 H 0.065 0.935 47 H 0.107 0.893 48 H 0.075 0.925 49 H 0.085 0.915 50 H 0.075 0.925 51 H 0.080 0.920 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.796 4.811 15.138 24.608 hybrid contribution -1.047 -0.056 0.571 1.194 sum 17.748 4.756 15.709 24.174 Atomic orbital electron populations 1.20261 0.87738 1.04289 1.02069 1.20447 0.97803 0.90337 1.06209 1.22673 0.84166 1.00515 1.09308 1.43336 1.08401 1.04698 1.53888 0.71418 1.73071 1.22864 0.93341 1.21174 1.22126 0.89096 0.95543 1.08834 1.16934 0.85759 0.82227 0.79589 1.91077 1.17063 1.80097 1.44448 1.47686 1.08760 1.05566 1.71108 1.22532 0.79962 1.04983 0.96930 1.21853 0.98980 0.95774 1.00221 1.21532 0.96627 0.96227 1.01256 1.22014 0.94034 1.01108 1.00083 1.20902 0.93493 0.80205 0.97623 0.91290 1.22106 0.92198 0.95596 0.98073 1.20968 0.86073 0.98200 0.90075 1.42704 1.05497 1.66774 1.24187 1.19059 0.93814 1.26395 0.95937 0.89738 1.24586 0.96638 1.01241 0.97204 1.69705 1.14974 1.50888 1.23686 0.86595 0.81543 0.80170 0.80559 1.21218 1.22138 1.20474 1.23065 1.01016 0.96101 0.96977 1.23248 1.00358 1.00587 0.96525 1.22797 0.99523 0.91808 0.96571 0.91827 0.92047 0.88596 0.80193 0.92724 0.84896 0.91441 0.91509 0.92260 0.92001 0.90847 0.90518 0.97745 0.92861 0.80650 0.93464 0.89276 0.92488 0.91461 0.92465 0.92000 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.99 36.01 0.36 -0.86 16 2 C -0.14 -1.88 6.25 -104.40 -0.65 -2.53 16 3 C -0.02 -0.21 11.97 -17.17 -0.21 -0.42 16 4 N -0.39 -3.40 6.83 30.47 0.21 -3.20 16 5 H 0.44 1.97 8.96 -190.44 -1.71 0.26 16 6 N -0.27 -3.21 8.65 33.42 0.29 -2.92 16 7 C 0.00 0.07 6.87 -82.76 -0.57 -0.50 16 8 C 0.57 9.32 5.88 -12.39 -0.07 9.25 16 9 O -0.46 -8.63 6.22 5.30 0.03 -8.60 16 10 N -0.60 -8.43 2.95 -166.37 -0.49 -8.92 16 11 C 0.08 0.90 6.31 -3.71 -0.02 0.88 16 12 C -0.13 -1.33 6.08 -26.61 -0.16 -1.50 16 13 C -0.12 -1.23 5.88 -26.69 -0.16 -1.38 16 14 C -0.13 -1.74 5.04 -26.61 -0.13 -1.88 16 15 C 0.18 2.58 2.28 -67.60 -0.15 2.43 16 16 H 0.07 0.92 7.31 -51.93 -0.38 0.54 16 17 C -0.08 -1.38 0.24 -153.70 -0.04 -1.41 16 18 C 0.17 3.78 4.55 -4.04 -0.02 3.76 16 19 N -0.75 -19.15 4.57 -59.91 -0.27 -19.42 16 20 C -0.22 -6.67 10.47 -15.06 -0.16 -6.83 16 21 H 0.08 2.74 8.06 -52.48 -0.42 2.32 16 22 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 23 N -0.94 -30.97 13.97 55.49 0.78 -30.20 16 24 Si 0.88 23.57 27.74 -169.99 -4.71 18.85 16 25 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 26 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 27 H -0.28 -7.07 6.52 56.52 0.37 -6.70 16 28 C -0.13 -2.26 6.84 -25.83 -0.18 -2.44 16 29 C -0.17 -2.63 7.74 -25.83 -0.20 -2.83 16 30 C -0.07 -1.24 4.50 -25.92 -0.12 -1.36 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.74 6.62 -51.93 -0.34 1.40 16 34 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.13 1.52 3.81 -103.01 -0.39 1.13 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.91 7.33 -51.93 -0.38 0.53 16 42 H 0.08 1.17 6.44 -51.93 -0.33 0.84 16 43 H 0.00 0.11 6.64 -51.93 -0.34 -0.23 16 44 H 0.05 1.25 4.56 -53.68 -0.24 1.00 16 45 H 0.36 9.10 2.86 -40.82 -0.12 8.99 16 46 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 47 H 0.09 1.77 6.63 -51.93 -0.34 1.43 16 48 H 0.06 0.84 7.26 -51.93 -0.38 0.47 16 49 H 0.07 0.91 7.60 -51.92 -0.39 0.51 16 50 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.06 1.09 6.51 -51.93 -0.34 0.75 16 52 H 0.09 1.80 6.53 -51.93 -0.34 1.47 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -35.62 376.66 -10.50 -46.12 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -9.43 Total: 10.39 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.57 Total: -7.79 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: 0.51 Total: -64.65 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.03 Total: -8.60 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.71 Total: 18.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.62 -10.50 -46.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105537726.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.542 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds