Wall clock time and date at job start Wed Apr 1 2020 06:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31808 * 119.11812 * 2 1 4 4 C 1.32327 * 120.81521 * 179.97438 * 3 2 1 5 5 C 1.38625 * 119.10074 * 359.74817 * 4 3 2 6 6 C 1.38575 * 118.39672 * 0.47357 * 5 4 3 7 7 C 1.50707 * 120.44340 * 179.80441 * 6 5 4 8 8 C 1.52995 * 109.47295 * 124.71967 * 7 6 5 9 9 C 1.50695 * 109.47192 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99895 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00242 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00459 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46747 * 34.99923 * 12 11 9 14 14 C 1.52993 * 109.47066 * 275.00196 * 12 11 9 15 15 C 1.53006 * 109.47172 * 299.99691 * 14 12 11 16 16 C 1.53003 * 109.46700 * 300.00228 * 15 14 12 17 17 C 1.53002 * 109.47365 * 59.99977 * 16 15 14 18 18 C 1.53002 * 109.46918 * 299.99575 * 17 16 15 19 19 H 1.08994 * 109.47199 * 300.00098 * 18 17 16 20 20 C 1.52999 * 109.47069 * 179.97438 * 18 17 16 21 21 N 1.46506 * 109.46684 * 65.00525 * 20 18 17 22 22 C 1.36938 * 119.99589 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00325 * 359.97438 * 22 21 20 24 24 C 1.38815 * 119.99408 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00325 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99550 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47397 * 90.00455 * 26 24 22 28 28 H 1.48510 * 109.46813 * 210.00284 * 26 24 22 29 29 H 1.48495 * 109.47179 * 329.99902 * 26 24 22 30 30 N 1.31781 * 119.12234 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47122 * 270.01741 * 1 2 3 32 32 H 1.08998 * 109.47331 * 30.02349 * 1 2 3 33 33 H 1.09004 * 109.46652 * 150.02314 * 1 2 3 34 34 H 1.07999 * 120.44680 * 180.02562 * 4 3 2 35 35 H 1.08002 * 120.79727 * 180.25316 * 5 4 3 36 36 H 1.09003 * 109.46949 * 4.71422 * 7 6 5 37 37 H 1.09008 * 109.46969 * 244.72015 * 7 6 5 38 38 H 1.09004 * 109.47049 * 59.99909 * 8 7 6 39 39 H 1.08995 * 109.47110 * 300.00149 * 8 7 6 40 40 H 0.97003 * 119.99960 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.47744 * 59.99633 * 14 12 11 42 42 H 1.08999 * 109.47626 * 179.97438 * 14 12 11 43 43 H 1.08999 * 109.46595 * 59.99675 * 15 14 12 44 44 H 1.08998 * 109.47266 * 180.02562 * 15 14 12 45 45 H 1.09000 * 109.46883 * 180.02562 * 16 15 14 46 46 H 1.08994 * 109.47229 * 299.99587 * 16 15 14 47 47 H 1.09000 * 109.47089 * 179.97438 * 17 16 15 48 48 H 1.08994 * 109.47265 * 59.99632 * 17 16 15 49 49 H 1.09000 * 109.47486 * 305.00460 * 20 18 17 50 50 H 1.09001 * 109.47362 * 184.99737 * 20 18 17 51 51 H 0.96995 * 120.00050 * 359.72237 * 21 20 18 52 52 H 0.97000 * 119.99693 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1907 0.0005 5 6 4.1809 -0.0001 0.0064 6 6 3.4713 -1.1903 0.0014 7 6 4.1962 -2.5116 0.0030 8 6 3.7157 -3.3555 1.1852 9 6 4.4402 -4.6769 1.1864 10 8 5.2604 -4.9195 0.3266 11 7 4.1774 -5.5887 2.1435 12 6 4.8820 -6.8731 2.1451 13 1 5.9034 -6.7275 1.7935 14 6 4.1586 -7.8527 1.2189 15 6 2.7248 -8.0571 1.7125 16 6 2.7506 -8.6231 3.1337 17 6 3.4740 -7.6434 4.0599 18 6 4.9077 -7.4391 3.5663 19 1 5.4320 -8.3947 3.5674 20 6 5.6310 -6.4589 4.4921 21 7 5.7609 -7.0519 5.8254 22 6 6.3786 -6.3533 6.8282 23 1 6.7703 -5.3654 6.6361 24 6 6.5012 -6.9151 8.0917 25 7 6.0243 -8.1192 8.3257 26 14 7.3444 -5.9623 9.4595 27 1 6.3385 -5.1503 10.1901 28 1 7.9904 -6.9133 10.3996 29 1 8.3749 -5.0663 8.8761 30 7 2.1484 -1.1512 0.0005 31 1 -0.3633 0.0003 1.0276 32 1 -0.3634 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 3.9906 2.1375 0.0009 35 1 5.2609 0.0000 0.0110 36 1 5.2685 -2.3375 0.0927 37 1 3.9906 -3.0399 -0.9280 38 1 2.6434 -3.5295 1.0954 39 1 3.9213 -2.8272 2.1161 40 1 3.5221 -5.3942 2.8319 41 1 4.1403 -7.4496 0.2064 42 1 4.6831 -8.8082 1.2197 43 1 2.2006 -7.1014 1.7114 44 1 2.2096 -8.7554 1.0529 45 1 1.7291 -8.7691 3.4852 46 1 3.2748 -9.5787 3.1348 47 1 3.4919 -8.0464 5.0725 48 1 2.9497 -6.6878 4.0588 49 1 5.0587 -5.5337 4.5601 50 1 6.6219 -6.2447 4.0917 51 1 5.4055 -7.9376 5.9990 52 1 6.1097 -8.5115 9.2087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268762313.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:13 Heat of formation + Delta-G solvation = -28.026185 kcal Electronic energy + Delta-G solvation = -30238.973087 eV Core-core repulsion = 26236.629663 eV Total energy + Delta-G solvation = -4002.343424 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.08393 -41.35724 -39.39735 -36.47480 -36.08026 -34.64505 -34.35212 -33.70857 -32.62019 -31.23462 -30.71591 -29.41902 -27.21369 -26.57347 -24.68196 -24.22882 -23.40337 -22.79920 -22.04572 -21.49238 -19.99747 -19.25730 -18.60260 -18.27586 -17.06305 -16.87922 -16.72830 -16.54871 -16.24241 -16.09381 -16.01366 -15.53991 -15.18993 -15.16600 -14.92691 -14.70845 -14.40778 -14.15297 -14.04043 -13.70834 -13.54621 -13.39685 -13.21295 -13.08743 -13.04324 -12.94577 -12.82837 -12.69717 -12.58903 -12.27945 -12.11614 -11.92690 -11.84683 -11.80801 -11.53490 -11.40966 -11.17362 -11.02751 -10.84836 -10.82944 -10.33293 -10.21935 -9.94138 -8.98868 -7.95594 -5.23686 -0.07718 0.08381 1.46533 1.47696 1.56165 1.70204 2.24262 2.55077 2.74172 2.93893 3.16590 3.37839 3.49189 3.60949 3.77791 3.81742 3.85801 4.08150 4.09647 4.12819 4.15591 4.23640 4.26051 4.44501 4.48671 4.49263 4.50635 4.59458 4.59961 4.64504 4.70110 4.72439 4.76828 4.84890 4.93276 4.97868 5.03025 5.08392 5.09369 5.11000 5.19297 5.28398 5.32183 5.37015 5.47388 5.49113 5.50727 5.54075 5.65128 6.06279 6.26848 6.60223 7.12403 7.29652 7.33758 8.09669 8.33773 9.27707 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.002450 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.376381 B =11426.695755 C =13262.453456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.301 3.699 3 N -0.546 5.546 4 C 0.148 3.852 5 C -0.231 4.231 6 C 0.170 3.830 7 C -0.048 4.048 8 C -0.123 4.123 9 C 0.516 3.484 10 O -0.580 6.580 11 N -0.710 5.710 12 C 0.163 3.837 13 H 0.067 0.933 14 C -0.122 4.122 15 C -0.108 4.108 16 C -0.114 4.114 17 C -0.104 4.104 18 C -0.088 4.088 19 H 0.075 0.925 20 C 0.162 3.838 21 N -0.741 5.741 22 C -0.245 4.245 23 H 0.071 0.929 24 C -0.073 4.073 25 N -0.967 5.967 26 Si 0.971 3.029 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.272 1.272 30 N -0.533 5.533 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.199 0.801 35 H 0.173 0.827 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.408 0.592 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.047 0.953 48 H 0.065 0.935 49 H 0.024 0.976 50 H 0.004 0.996 51 H 0.376 0.624 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 12.894 -20.286 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.034 3.966 3 N -0.261 5.261 4 C -0.018 4.018 5 C -0.252 4.252 6 C 0.024 3.976 7 C -0.086 4.086 8 C -0.163 4.163 9 C 0.304 3.696 10 O -0.460 6.460 11 N -0.362 5.362 12 C 0.057 3.943 13 H 0.085 0.915 14 C -0.160 4.160 15 C -0.145 4.145 16 C -0.152 4.152 17 C -0.142 4.142 18 C -0.107 4.107 19 H 0.093 0.907 20 C 0.035 3.965 21 N -0.384 5.384 22 C -0.376 4.376 23 H 0.089 0.911 24 C -0.265 4.265 25 N -0.618 5.618 26 Si 0.800 3.200 27 H -0.213 1.213 28 H -0.222 1.222 29 H -0.197 1.197 30 N -0.249 5.249 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.216 0.784 35 H 0.190 0.810 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.119 0.881 40 H 0.245 0.755 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.042 0.958 50 H 0.022 0.978 51 H 0.208 0.792 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.326 12.861 -20.825 26.970 hybrid contribution 1.343 0.027 1.498 2.012 sum -9.984 12.888 -19.327 25.285 Atomic orbital electron populations 1.20647 0.84093 1.04770 1.04647 1.23812 0.99450 0.83318 0.90061 1.68329 1.11314 1.30677 1.15827 1.23825 0.89275 1.00078 0.88582 1.23091 1.04366 0.93511 1.04232 1.21891 0.89663 0.96496 0.89565 1.20263 0.99514 0.89558 0.99274 1.21496 1.02290 0.91957 1.00604 1.20942 0.82025 0.86120 0.80550 1.90674 1.36275 1.80314 1.38756 1.46091 1.43547 1.16310 1.30264 1.20747 0.96037 0.83177 0.94307 0.91451 1.21836 0.96993 0.98935 0.98252 1.21445 0.95759 1.01425 0.95903 1.21532 1.00540 0.98300 0.94806 1.21446 0.93974 0.99967 0.98836 1.21451 0.97275 0.98912 0.93110 0.90659 1.20746 0.96049 0.95052 0.84605 1.42542 1.69736 1.19228 1.06864 1.19580 1.28624 0.98921 0.90523 0.91108 1.25516 1.03122 0.97860 1.00043 1.69802 1.53083 1.16819 1.22061 0.85185 0.78189 0.77438 0.79218 1.21252 1.22179 1.19738 1.68087 1.10109 1.30983 1.15736 0.88761 0.88899 0.89059 0.78394 0.80996 0.88526 0.89350 0.86945 0.88061 0.75495 0.92088 0.90676 0.91653 0.90787 0.90992 0.92128 0.93435 0.91658 0.95760 0.97771 0.79161 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.32 71.24 0.74 -0.32 16 2 C 0.30 5.73 7.64 138.75 1.06 6.79 16 3 N -0.55 -10.35 10.34 -187.82 -1.94 -12.29 16 4 C 0.15 2.11 11.31 84.71 0.96 3.07 16 5 C -0.23 -3.28 9.80 22.44 0.22 -3.06 16 6 C 0.17 3.05 6.20 42.56 0.26 3.31 16 7 C -0.05 -0.84 4.94 29.85 0.15 -0.69 16 8 C -0.12 -2.20 5.57 29.84 0.17 -2.04 16 9 C 0.52 12.29 7.79 87.66 0.68 12.98 16 10 O -0.58 -17.74 15.64 -3.03 -0.05 -17.79 16 11 N -0.71 -16.33 3.62 -442.55 -1.60 -17.93 16 12 C 0.16 4.24 2.23 44.99 0.10 4.34 16 13 H 0.07 2.05 7.58 -2.39 -0.02 2.04 16 14 C -0.12 -2.69 5.60 30.59 0.17 -2.52 16 15 C -0.11 -2.05 5.77 30.60 0.18 -1.88 16 16 C -0.11 -2.48 5.92 30.60 0.18 -2.30 16 17 C -0.10 -2.88 4.90 30.60 0.15 -2.73 16 18 C -0.09 -2.67 2.02 -10.79 -0.02 -2.69 16 19 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 20 C 0.16 6.34 5.42 86.38 0.47 6.80 16 21 N -0.74 -37.02 5.33 -343.44 -1.83 -38.85 16 22 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 23 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 24 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 25 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 26 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 27 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 30 N -0.53 -10.74 9.94 -176.02 -1.75 -12.49 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.02 8.14 -2.38 -0.02 1.01 16 34 H 0.20 1.38 8.06 -2.91 -0.02 1.35 16 35 H 0.17 1.51 8.01 -2.91 -0.02 1.48 16 36 H 0.10 1.61 7.90 -2.39 -0.02 1.59 16 37 H 0.09 1.70 8.10 -2.38 -0.02 1.68 16 38 H 0.11 1.84 7.98 -2.39 -0.02 1.82 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.41 8.34 6.67 -92.71 -0.62 7.72 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.19 7.60 -2.39 -0.02 1.17 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.05 1.63 7.18 -2.39 -0.02 1.61 16 48 H 0.06 1.64 6.51 -2.39 -0.02 1.63 16 49 H 0.02 0.93 7.60 -2.39 -0.02 0.91 16 50 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 51 H 0.38 19.84 6.84 -92.71 -0.63 19.21 16 52 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -72.02 415.44 1.58 -70.44 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: -0.33 Total: 36.67 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 6.77 Total: 2.57 kcal Atomic # 7 Polarization: -133.09 SS G_CDS: -6.84 Total: -139.93 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.05 Total: -17.79 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -72.02 1.58 -70.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268762313.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.417 kcal (2) G-P(sol) polarization free energy of solvation -72.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds