Wall clock time and date at job start Wed Apr 1 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31805 * 119.12091 * 2 1 4 4 C 1.32322 * 120.81856 * 179.71334 * 3 2 1 5 5 C 1.38631 * 119.09818 * 0.54520 * 4 3 2 6 6 C 1.38571 * 118.39852 * 359.72936 * 5 4 3 7 7 C 1.50704 * 120.44736 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47064 * 125.02114 * 7 6 5 9 9 C 1.50693 * 109.47216 * 180.02562 * 8 7 6 10 10 O 1.21291 * 119.99945 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00385 * 179.97438 * 9 8 7 12 12 C 1.46923 * 120.62944 * 354.02853 * 11 9 8 13 13 C 1.52765 * 109.00844 * 233.58123 * 12 11 9 14 14 C 1.53043 * 109.37821 * 305.58766 * 13 12 11 15 15 C 1.53042 * 109.54300 * 61.23987 * 14 13 12 16 16 H 1.09003 * 109.49459 * 58.58242 * 15 14 13 17 17 C 1.52994 * 109.52430 * 178.66596 * 15 14 13 18 18 C 1.46930 * 120.63183 * 174.29770 * 11 9 8 19 19 H 1.09001 * 109.59000 * 246.15546 * 18 11 9 20 20 C 1.52999 * 109.58674 * 6.58728 * 18 11 9 21 21 N 1.46496 * 109.46989 * 292.96327 * 20 18 11 22 22 C 1.36939 * 119.99801 * 185.81957 * 21 20 18 23 23 H 1.08002 * 120.00230 * 0.02562 * 22 21 20 24 24 C 1.38808 * 120.00119 * 179.97438 * 22 21 20 25 25 N 1.31624 * 120.00390 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99852 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47350 * 89.99907 * 26 24 22 28 28 H 1.48504 * 109.46843 * 209.99620 * 26 24 22 29 29 H 1.48500 * 109.46847 * 329.99207 * 26 24 22 30 30 N 1.31780 * 119.12041 * 180.26322 * 2 1 3 31 31 H 1.08996 * 109.47359 * 269.73624 * 1 2 3 32 32 H 1.08997 * 109.47107 * 29.73511 * 1 2 3 33 33 H 1.09002 * 109.47083 * 149.73184 * 1 2 3 34 34 H 1.07989 * 120.45388 * 180.27115 * 4 3 2 35 35 H 1.07995 * 120.79823 * 179.75528 * 5 4 3 36 36 H 1.08997 * 109.47158 * 245.02550 * 7 6 5 37 37 H 1.08998 * 109.46985 * 5.02381 * 7 6 5 38 38 H 1.09002 * 109.46799 * 300.00122 * 8 7 6 39 39 H 1.08997 * 109.47378 * 59.99894 * 8 7 6 40 40 H 1.09002 * 109.58587 * 353.41229 * 12 11 9 41 41 H 1.08999 * 109.59110 * 113.84313 * 12 11 9 42 42 H 1.08995 * 109.56931 * 185.54819 * 13 12 11 43 43 H 1.08997 * 109.36005 * 65.49166 * 13 12 11 44 44 H 1.09001 * 109.46079 * 301.21138 * 14 13 12 45 45 H 1.09008 * 109.45676 * 181.26161 * 14 13 12 46 46 H 1.09003 * 109.46838 * 179.85679 * 17 15 14 47 47 H 1.09005 * 109.47070 * 299.85002 * 17 15 14 48 48 H 1.08999 * 109.47456 * 59.85486 * 17 15 14 49 49 H 1.09002 * 109.47002 * 52.96111 * 20 18 11 50 50 H 1.09004 * 109.46982 * 172.95794 * 20 18 11 51 51 H 0.96993 * 120.00238 * 5.81761 * 21 20 18 52 52 H 0.96997 * 120.00109 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1906 0.0057 5 6 4.1809 -0.0002 0.0002 6 6 3.4713 -1.1904 -0.0054 7 6 4.1961 -2.5116 -0.0121 8 6 3.7161 -3.3627 1.1652 9 6 4.4413 -4.6836 1.1589 10 8 5.2611 -4.9212 0.2972 11 7 4.1790 -5.6010 2.1107 12 6 3.2876 -5.2806 3.2339 13 6 4.0108 -5.5834 4.5450 14 6 4.5066 -7.0312 4.5288 15 6 5.4943 -7.2211 3.3754 16 1 6.3299 -6.5314 3.4946 17 6 6.0151 -8.6597 3.3798 18 6 4.7835 -6.9387 2.0481 19 1 4.0053 -7.6842 1.8845 20 6 5.7965 -6.9906 0.9026 21 7 5.0933 -6.8706 -0.3769 22 6 5.7819 -7.0107 -1.5523 23 1 6.8432 -7.2101 -1.5360 24 6 5.1155 -6.8976 -2.7647 25 7 5.7772 -7.0328 -3.8945 26 14 3.2797 -6.5535 -2.7930 27 1 3.0512 -5.0863 -2.8139 28 1 2.6801 -7.1651 -4.0061 29 1 2.6483 -7.1357 -1.5815 30 7 2.1484 -1.1512 -0.0053 31 1 -0.3634 -0.0047 1.0276 32 1 -0.3633 0.8923 -0.5097 33 1 -0.3633 -0.8876 -0.5180 34 1 3.9906 2.1374 0.0101 35 1 5.2609 -0.0002 0.0006 36 1 3.9902 -3.0343 -0.9462 37 1 5.2684 -2.3382 0.0783 38 1 3.9221 -2.8399 2.0992 39 1 2.6438 -3.5361 1.0749 40 1 3.0226 -4.2238 3.2000 41 1 2.3850 -5.8881 3.1690 42 1 3.3254 -5.4428 5.3808 43 1 4.8603 -4.9091 4.6532 44 1 3.6592 -7.7038 4.3959 45 1 5.0032 -7.2555 5.4729 46 1 6.7165 -8.7948 2.5564 47 1 6.5207 -8.8602 4.3244 48 1 5.1791 -9.3492 3.2617 49 1 6.5048 -6.1685 1.0064 50 1 6.3332 -7.9388 0.9349 51 1 4.1401 -6.6920 -0.3916 52 1 5.3116 -6.9533 -4.7417 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667386803.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:40:42 Heat of formation + Delta-G solvation = 55.199086 kcal Electronic energy + Delta-G solvation = -31935.382123 eV Core-core repulsion = 27936.647617 eV Total energy + Delta-G solvation = -3998.734506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.20773 -40.34427 -37.50752 -35.37379 -34.56188 -33.53069 -33.48483 -32.16395 -31.39155 -30.51659 -28.69555 -27.51931 -26.11818 -25.62201 -23.92229 -23.14640 -22.14502 -21.84670 -20.87192 -20.14023 -18.72780 -17.70191 -17.51015 -16.67599 -16.07610 -15.65053 -15.49982 -15.23663 -15.22157 -14.78611 -14.61291 -14.14458 -13.96956 -13.82262 -13.48829 -13.22468 -13.12585 -12.78007 -12.74374 -12.68915 -12.52373 -12.40487 -12.33907 -12.12877 -11.92945 -11.68372 -11.56570 -11.25626 -11.10622 -11.04698 -10.92833 -10.75298 -10.66832 -10.60724 -10.49435 -10.16272 -9.86841 -9.49683 -9.38530 -9.30904 -8.72623 -8.41101 -8.15343 -6.75533 -5.55228 -2.80768 0.78590 0.95795 3.22257 3.27463 3.49049 3.53440 3.56502 3.61112 3.78605 3.96412 4.33310 4.65658 4.73169 4.77992 4.79170 4.86070 4.93328 4.96165 5.06624 5.14616 5.20489 5.25903 5.29893 5.32442 5.35275 5.38501 5.51565 5.59532 5.65670 5.69174 5.72162 5.73858 5.77100 5.77524 5.82998 5.85466 5.87117 6.03404 6.07181 6.10178 6.19226 6.22105 6.30796 6.36690 6.45120 6.60309 6.88254 6.93020 7.19755 7.86420 8.00490 8.20567 8.63204 8.83148 9.44576 10.18093 10.38978 11.64774 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008220 B = 0.004212 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.375618 B = 6645.924817 C = 8947.365947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.316 3.684 3 N -0.530 5.530 4 C 0.150 3.850 5 C -0.232 4.232 6 C 0.191 3.809 7 C -0.061 4.061 8 C -0.124 4.124 9 C 0.464 3.536 10 O -0.443 6.443 11 N -0.619 5.619 12 C 0.111 3.889 13 C -0.134 4.134 14 C -0.113 4.113 15 C -0.098 4.098 16 H 0.074 0.926 17 C -0.147 4.147 18 C 0.143 3.857 19 H 0.066 0.934 20 C 0.168 3.832 21 N -0.720 5.720 22 C -0.208 4.208 23 H 0.086 0.914 24 C -0.003 4.003 25 N -0.944 5.944 26 Si 0.881 3.119 27 H -0.287 1.287 28 H -0.296 1.296 29 H -0.284 1.284 30 N -0.516 5.516 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.044 0.956 50 H 0.027 0.973 51 H 0.356 0.644 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 11.210 19.324 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 N -0.245 5.245 4 C -0.015 4.015 5 C -0.254 4.254 6 C 0.045 3.955 7 C -0.099 4.099 8 C -0.165 4.165 9 C 0.249 3.751 10 O -0.312 6.312 11 N -0.357 5.357 12 C -0.012 4.012 13 C -0.172 4.172 14 C -0.150 4.150 15 C -0.118 4.118 16 H 0.092 0.908 17 C -0.205 4.205 18 C 0.040 3.960 19 H 0.084 0.916 20 C 0.041 3.959 21 N -0.364 5.364 22 C -0.338 4.338 23 H 0.104 0.896 24 C -0.197 4.197 25 N -0.595 5.595 26 Si 0.713 3.287 27 H -0.214 1.214 28 H -0.223 1.223 29 H -0.211 1.211 30 N -0.232 5.232 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.184 0.816 35 H 0.167 0.833 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.062 0.938 50 H 0.044 0.956 51 H 0.189 0.811 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.281 11.059 18.631 22.857 hybrid contribution -0.511 0.421 -0.062 0.665 sum -7.793 11.480 18.570 23.181 Atomic orbital electron populations 1.20558 0.85849 1.04172 1.03736 1.23267 0.98163 0.83424 0.90250 1.68238 1.10207 1.30533 1.15530 1.23200 0.89691 0.98566 0.90058 1.22817 1.03153 0.94100 1.05371 1.21871 0.89447 0.96134 0.88014 1.20435 0.99259 0.89459 1.00724 1.21519 1.01946 0.94288 0.98724 1.20500 0.86450 0.85934 0.82181 1.91198 1.30559 1.75005 1.34396 1.47910 1.49101 1.13522 1.25166 1.21506 0.92703 1.01066 0.85947 1.21843 1.00670 0.97572 0.97164 1.21571 0.99042 0.96195 0.98227 1.21459 0.98081 0.97864 0.94391 0.90795 1.21850 1.01394 0.95308 1.01934 1.21564 0.95800 0.83156 0.95494 0.91599 1.20865 0.93316 0.98126 0.83610 1.42631 1.06672 1.85563 1.01568 1.18999 0.94138 1.37966 0.82719 0.89643 1.24525 0.96749 1.03172 0.95246 1.69697 1.34509 1.58816 0.96464 0.86577 0.87923 0.78029 0.76126 1.21376 1.22301 1.21056 1.68118 1.09764 1.30415 1.14860 0.89725 0.89752 0.89563 0.81551 0.83340 0.87938 0.88750 0.90150 0.88880 0.90229 0.92037 0.91174 0.91649 0.91911 0.91943 0.91473 0.92849 0.92649 0.93809 0.95560 0.81148 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.32 36.01 0.37 -0.42 16 2 C 0.32 4.07 7.64 -157.19 -1.20 2.87 16 3 N -0.53 -6.61 10.33 -10.72 -0.11 -6.72 16 4 C 0.15 1.59 11.31 -17.20 -0.19 1.39 16 5 C -0.23 -2.61 9.80 -39.31 -0.39 -2.99 16 6 C 0.19 2.62 6.20 -82.24 -0.51 2.11 16 7 C -0.06 -0.90 4.94 -27.88 -0.14 -1.04 16 8 C -0.12 -1.72 3.99 -27.89 -0.11 -1.83 16 9 C 0.46 7.94 6.96 -10.99 -0.08 7.87 16 10 O -0.44 -9.68 9.64 5.55 0.05 -9.63 16 11 N -0.62 -9.15 2.98 -165.48 -0.49 -9.64 16 12 C 0.11 1.19 6.30 -3.93 -0.02 1.16 16 13 C -0.13 -1.20 6.07 -26.83 -0.16 -1.37 16 14 C -0.11 -1.09 5.17 -26.69 -0.14 -1.23 16 15 C -0.10 -1.20 2.34 -90.50 -0.21 -1.41 16 16 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 17 C -0.15 -1.68 8.97 37.15 0.33 -1.35 16 18 C 0.14 2.26 2.42 -67.60 -0.16 2.09 16 19 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 20 C 0.17 3.43 4.76 -4.04 -0.02 3.42 16 21 N -0.72 -18.11 2.95 -59.91 -0.18 -18.29 16 22 C -0.21 -6.20 10.17 -15.06 -0.15 -6.35 16 23 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 24 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 25 N -0.94 -31.19 13.97 55.49 0.78 -30.41 16 26 Si 0.88 23.92 27.74 -169.99 -4.71 19.20 16 27 H -0.29 -7.78 7.11 56.52 0.40 -7.37 16 28 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 29 H -0.28 -7.35 6.52 56.52 0.37 -6.98 16 30 N -0.52 -7.43 9.94 -6.99 -0.07 -7.50 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.15 1.31 8.01 -52.49 -0.42 0.88 16 36 H 0.10 1.89 8.10 -51.93 -0.42 1.47 16 37 H 0.09 1.33 7.90 -51.93 -0.41 0.92 16 38 H 0.08 0.91 7.44 -51.93 -0.39 0.53 16 39 H 0.09 1.29 7.97 -51.93 -0.41 0.88 16 40 H 0.08 0.75 5.96 -51.93 -0.31 0.44 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 46 H 0.07 0.86 6.47 -51.93 -0.34 0.53 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.04 0.98 6.50 -51.93 -0.34 0.64 16 50 H 0.03 0.55 6.34 -51.93 -0.33 0.22 16 51 H 0.36 9.02 4.67 -40.82 -0.19 8.83 16 52 H 0.25 8.05 8.31 -40.82 -0.34 7.71 16 LS Contribution 402.63 15.07 6.07 6.07 Total: -1.00 -36.85 402.63 -10.19 -47.04 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -8.64 Total: 7.15 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -2.88 Total: 2.73 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -0.07 Total: -72.56 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.05 Total: -9.63 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -4.71 Total: 19.20 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.85 -10.19 -47.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667386803.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.237 kcal (2) G-P(sol) polarization free energy of solvation -36.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds